Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Reverse (-)

21399968 .. 21403374

Gene Structure 3407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26500.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAGGCATTGGGACCAGTGGGCCGAAGAGGCTCTTCACAAGCTTGATCGTCTGCAGCTTCTTCGTTCTCTCAGACCCATTTACCTCCATAATGGACCGATCCAAGAAGCCCAGAAATCTGCCGAAGATGAATTCAACGTGTTCGATGAAATGCAGACATGGGACCGCTCGTCTGTGGAGGTTCACATTCCCGAACCCACATTCGAAAAATGGCTCCATGACATTCCCAGTTCCGGAGATGAGGAAGGTACCCAGAAGTTTAAAAAGCTGCTACTTTTCTCTGGAAATGACTATTTAGGCTTGAGTTCACATCCTACTATTGGAAAAGCTGCTGCTAAGGCAGCGCTAGAACATGGAATGGGCCCGAGGGGTTCTGCTTTAATTTGTGGATACACTGATTACCATAGGCGATTGGAGTCATGCTTAGCAGACTTAAAGAAGAAAGAGGATTGCCTTCTTTGTCCCACAGGGTTTGCAGCCAATATGGCCTTGATGGTAGCTTTGGGAAATGTTGGCTCTCTTTTGTCCGCTGGAAAAATGCCTTTAACTAATGAAAAGATTGCAATTTTTTCTGACGCACTGAACCATGCATCAATAATCGATGGTATTCGTCTTGCTGAACGACAAAAATCTGTAGAGATATTCATCTATAGACATTGTGACATGACACACCTTAATGCGTTGTTATCAAGTTGCACAATGAGGAAGAAAGTCGTTGTGACTGATAGCTTGTTTAGTATGGACGGAGACTTTGCACCAATCACTGAGCTTGTGAAGCTACGCAGGGAGCATGACTTTCTGTTAGTTATTGATGATGCTCATGGAACATTTGTTTGTGGAAAAAATGGTGGTGGAGTGGCTGAGGAATACAATTGTGAAGGTGATGTTGACATATGCGTTGGGACTTTAAGTAAGGCTGCAGGTTGCCATGGCGGATTCATCGCATGCAGCAAAAGGTGGAAGAAATTCATACAATCAAGGGGTCGTTCTTTTATATTTTCAACTGCTACGCCAATACCAATTGCTGCTGCTGCTCATGCTGCTGTTTTTGTGGCAAGAAAGGAAACATGGCGTAGAAGGGAAATTTGGAATCGGGTGAAAGACTTTCGTGCTCTCACTGGAATTCCCATAAACAGTCCCATAATATCGCTCATAGTAGGGAGCGAAGAGAAGGCTCTGCAAGCCAGCCAGAGTTTGCTAAAATCTGGCTTCCATGTGACTGCAATCAGACCCCCAACAGTGCCACCCAACTCATGCAGGTTACGTGTGACATTGAGCGCAACGCACACGAGGAACGATGTCGAGAGGTTCACAGCTGCACTCTCCCGTTGCGTCAATTTCCAAGAAATTGGCATCCATGGCTCAAATGGATATGCAAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

462

Amino Acids

51.1

Weight (kDa)

8.35

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	911, 1248
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	3 cut(s)	166, 528, 933
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	4 cut(s)	131, 965, 1083, 1122
AfaI	GTAC	1 cut(s)	250
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	233, 320
AflIII	ACRYGT	2 cut(s)	138, 1264
AgsI	TTSAA	2 cut(s)	136, 1002
AhdI	GACNNNNNGTC	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	1069, 1101
AluBI	AGCT	9 cut(s)	43, 58, 268, 329, 500, 729, 769, 778, 1316
AluI	AGCT	9 cut(s)	43, 58, 268, 329, 500, 729, 769, 778, 1316
Alw21I	GWGCWC	1 cut(s)	1114
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	3 cut(s)	21, 361, 486
ApaI	GGGCCC	1 cut(s)	365
ApoI	RAATTY	4 cut(s)	131, 965, 1083, 1122
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	346, 1280
AspS9I	GGNCC	6 cut(s)	13, 21, 95, 163, 361, 362
AsuHPI	GGTGA	2 cut(s)	893, 1108
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	3 cut(s)	13, 95, 163
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	1288
Bbv12I	GWGCWC	1 cut(s)	1114
BbvCI	CCTCAGC	1 cut(s)	861
BccI	CCATC	2 cut(s)	487, 596
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciVI	GTATCC	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	4 cut(s)	53, 633, 649, 918
BfoI	RGCGCY	1 cut(s)	347
BfuAI	ACCTGC	2 cut(s)	911, 1248
BfuI	GTATCC	1 cut(s)	383
BglI	GCCNNNNNGGC	2 cut(s)	29, 485
BlpI	GCTNAGC	1 cut(s)	424
Bme18I	GGWCC	3 cut(s)	13, 95, 163
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	6 cut(s)	13, 21, 95, 163, 361, 362
BmiI	GGNNCC	5 cut(s)	14, 164, 215, 250, 363
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	599, 805, 1362
BmuI	ACTGGG	1 cut(s)	222
Bpu10I	CCTNAGC	2 cut(s)	336, 861
Bpu1102I	GCTNAGC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	1265
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	3 cut(s)	365, 928, 1357
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 320
Bse1I	ACTGG	3 cut(s)	16, 228, 1123
Bse8I	GATNNNNATC	1 cut(s)	644
BseAI	TCCGGA	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	365, 928, 1357
BseGI	GGATG	2 cut(s)	310, 1353
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	2 cut(s)	233, 320
BseMII	CTCAG	3 cut(s)	85, 756, 852
BseNI	ACTGG	3 cut(s)	16, 228, 1123
BseSI	GKGCMC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	1302
BshFI	GGCC	3 cut(s)	23, 363, 488
BshNI	GGYRCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	1114
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	5 cut(s)	26, 176, 447, 916, 1122
BslI	CCNNNNNNNGG	2 cut(s)	233, 320
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	5 cut(s)	26, 176, 447, 916, 1122
BsnI	GGCC	3 cut(s)	23, 363, 488
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	204
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	365, 1114
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	46, 99
Bsp1720I	GCTNAGC	1 cut(s)	424
Bsp19I	CCATGG	2 cut(s)	928, 1357
BspACI	CCGC	3 cut(s)	166, 528, 933
BspANI	GGCC	3 cut(s)	23, 363, 488
BspCNI	CTCAG	3 cut(s)	84, 757, 853
BspDI	ATCGAT	1 cut(s)	600
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	5 cut(s)	14, 164, 215, 250, 363
BspMAI	CTGCAG	2 cut(s)	57, 922
BspMI	ACCTGC	2 cut(s)	911, 1248
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	16, 228, 1123
BssECI	CCNNGG	3 cut(s)	365, 928, 1357
BssMI	GATC	2 cut(s)	46, 99
BssSI	CACGAG	1 cut(s)	1288
BssT1I	CCWWGG	2 cut(s)	928, 1357
Bst2BI	CACGAG	1 cut(s)	1288
Bst4CI	ACNGT	2 cut(s)	1136, 1240
Bst6I	CTCTTC	3 cut(s)	21, 39, 1161
BstBAI	YACGTR	1 cut(s)	1265
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	946, 1182, 1186
BstDEI	CTNAG	5 cut(s)	71, 336, 424, 765, 861
BstDSI	CCRYGG	2 cut(s)	928, 1357
BstF5I	GGATG	2 cut(s)	310, 1353
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	2 cut(s)	346, 1280
BstKTI	GATC	2 cut(s)	49, 102
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	2 cut(s)	46, 99
BstNSI	RCATGY	1 cut(s)	948
BstSFI	CTRYAG	4 cut(s)	53, 633, 649, 918
BstSLI	GKGCMC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	1349
Bsu15I	ATCGAT	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	23, 363, 488
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	2 cut(s)	928, 1357
BtgZI	GCGATG	1 cut(s)	925
BtsCI	GGATG	2 cut(s)	310, 1353
BtsIMutI	CAGTG	6 cut(s)	23, 393, 578, 762, 1116, 1245
BveI	ACCTGC	2 cut(s)	911, 1248
Cac8I	GCNNGC	3 cut(s)	946, 1182, 1186
CfoI	GCGC	2 cut(s)	346, 1280
Cfr13I	GGNCC	6 cut(s)	13, 21, 95, 163, 361, 362
ClaI	ATCGAT	1 cut(s)	600
CseI	GACGC	2 cut(s)	584, 1321
Csp6I	GTAC	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	5 cut(s)	71, 336, 424, 765, 861
DpnI	GATC	2 cut(s)	48, 101
DpnII	GATC	2 cut(s)	46, 99
DraI	TTTAAA	1 cut(s)	262
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	21, 39, 1161
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	3 cut(s)	21, 39, 1161
EciI	GGCGGA	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	928, 1357
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	13, 95, 163
Eco47III	AGCGCT	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	2 cut(s)	131, 1122
EcoT14I	CCWWGG	2 cut(s)	928, 1357
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	2 cut(s)	928, 1357
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	5 cut(s)	26, 176, 447, 916, 1122
FauNDI	CATATG	1 cut(s)	893
FokI	GGATG	2 cut(s)	297, 1340
FriOI	GRGCYC	1 cut(s)	365
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	345, 1279
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	23, 363, 488
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	2 cut(s)	584, 1321
HhaI	GCGC	2 cut(s)	346, 1280
Hin6I	GCGC	2 cut(s)	344, 1278
HinP1I	GCGC	2 cut(s)	344, 1278
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	416, 936, 1090
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	893, 1108
Hpy166II	GTNNAC	4 cut(s)	184, 308, 889, 1311
Hpy188I	TCNGA	3 cut(s)	74, 574, 1229
Hpy188III	TCNNGA	4 cut(s)	191, 234, 282, 1303
Hpy8I	GTNNAC	4 cut(s)	184, 308, 889, 1311
HpyAV	CCTTC	5 cut(s)	239, 464, 872, 1071, 1165
HpyCH4III	ACNGT	2 cut(s)	1136, 1240
HpyCH4IV	ACGT	2 cut(s)	138, 1264
HpyF3I	CTNAG	5 cut(s)	71, 336, 424, 765, 861
HpySE526I	ACGT	2 cut(s)	138, 1264
HspAI	GCGC	2 cut(s)	344, 1278
Kpn2I	TCCGGA	1 cut(s)	233
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	46, 99
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	219, 787, 1161
LweI	GCATC	3 cut(s)	599, 805, 1362
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	138, 1264
MaeIII	GTNAC	5 cut(s)	659, 718, 1216, 1260, 1267
MalI	GATC	2 cut(s)	48, 101
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	2 cut(s)	46, 99
MboII	GAAGA	8 cut(s)	26, 38, 53, 137, 451, 718, 973, 1178
MfeI	CAATTG	2 cut(s)	871, 1020
MhlI	GDGCHC	2 cut(s)	365, 1114
MlyI	GAGTC	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	6 cut(s)	261, 380, 434, 545, 675, 908
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	530, 1316
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	2 cut(s)	871, 1020
NcoI	CCATGG	2 cut(s)	928, 1357
NdeI	CATATG	1 cut(s)	893
NdeII	GATC	2 cut(s)	46, 99
NlaIV	GGNNCC	5 cut(s)	14, 164, 215, 250, 363
NmuCI	GTSAC	4 cut(s)	659, 718, 1216, 1267
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	948
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	2 cut(s)	936, 1090
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	1265
PspN4I	GGNNCC	5 cut(s)	14, 164, 215, 250, 363
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	6 cut(s)	13, 21, 95, 163, 361, 362
PstI	CTGCAG	2 cut(s)	57, 922
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	6 cut(s)	261, 380, 434, 545, 675, 908
Sau3AI	GATC	2 cut(s)	46, 99
Sau96I	GGNCC	6 cut(s)	13, 21, 95, 163, 361, 362
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	365, 1114
SfaNI	GCATC	3 cut(s)	599, 805, 1362
SfcI	CTRYAG	4 cut(s)	53, 633, 649, 918
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	3 cut(s)	13, 95, 163
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SphI	GCATGC	1 cut(s)	948
SsiI	CCGC	3 cut(s)	166, 528, 933
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	928, 1357
TaaI	ACNGT	2 cut(s)	1136, 1240
TaiI	ACGT	2 cut(s)	141, 1267
TaqI	TCGA	4 cut(s)	144, 204, 600, 1302
TaqII	GACCGA	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	936, 1090
Tru1I	TTAA	6 cut(s)	261, 380, 434, 545, 675, 908
Tru9I	TTAA	6 cut(s)	261, 380, 434, 545, 675, 908
TscAI	CASTG	6 cut(s)	23, 400, 585, 769, 1123, 1245
TseFI	GTSAC	4 cut(s)	659, 718, 1216, 1267
Tsp45I	GTSAC	4 cut(s)	659, 718, 1216, 1267
TspDTI	ATGAA	6 cut(s)	144, 162, 567, 634, 928, 958
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	6 cut(s)	23, 400, 585, 769, 1123, 1245
VpaK11BI	GGWCC	3 cut(s)	13, 95, 163
XapI	RAATTY	4 cut(s)	131, 965, 1083, 1122
XceI	RCATGY	1 cut(s)	948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1364
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.