Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Forward (+)

61312 .. 61988

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgggctcctgggacaactgggtcgaacactcccttgacaaacttgaacgcctgcaactcctccggtctctccgacccatctacctccgcaatgaaccacaaaaacccaccaccaccgtcgaagatgacgacctccaagtcttccaccaaatgcagctctgggaccgttcctccgtggaggtccacattcccgaatcaatgttccagaaatggctcagtgacatccccagttccggagatgaggaagatacccggagattcagaaagttgttgttgttctctggaaatgattatctgggcttgagttctcatcccaccattggaaatgctgctgctaaggcggctcaagaacatggaatgggcccaaggggctctgctttgatctgtggatatacagattaccatgggtttctggagtcatccttagcggacttgaagaagaaagaggtatcagctgctctgtttggatgctatagctttcttttcttcactgctttgcttgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

5.46

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 137
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	3 cut(s)	88, 341, 428
AfiI	CCNNNNNNNGG	2 cut(s)	233, 320
AgsI	TTSAA	2 cut(s)	47, 436
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	157, 455, 477
AluI	AGCT	3 cut(s)	157, 455, 477
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	1 cut(s)	361
ApaI	GGGCCC	1 cut(s)	365
ApeKI	GCWGC	4 cut(s)	154, 329, 332, 455
AspS9I	GGNCC	4 cut(s)	163, 181, 361, 362
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	163, 181
BaeGI	GKGCMC	1 cut(s)	365
BanII	GRGCYC	3 cut(s)	8, 365, 374
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	166, 316, 319, 442
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	155, 330, 333, 342, 456
BlsI	GCNGC	5 cut(s)	156, 331, 334, 343, 457
Bme1390I	CCNGG	2 cut(s)	10, 253
Bme18I	GGWCC	2 cut(s)	163, 181
BmgT120I	GGNCC	4 cut(s)	163, 181, 361, 362
BmiI	GGNNCC	3 cut(s)	7, 164, 363
BmrFI	CCNGG	2 cut(s)	10, 253
BmrI	ACTGGG	2 cut(s)	28, 222
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	2 cut(s)	28, 222
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	2 cut(s)	336, 424
BpuEI	CTTGAG	2 cut(s)	322, 330
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	9, 174, 365, 403
BsaWI	WCCGGW	2 cut(s)	63, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 320
Bse1I	ACTGG	2 cut(s)	23, 228
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	4 cut(s)	9, 174, 365, 403
BseGI	GGATG	4 cut(s)	222, 310, 419, 473
BseLI	CCNNNNNNNGG	2 cut(s)	233, 320
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	23, 228
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	166, 316, 319, 442
BshFI	GGCC	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	64, 234, 253
BslFI	GGGAC	2 cut(s)	26, 176
BslI	CCNNNNNNNGG	2 cut(s)	233, 320
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	26, 176
BsnI	GGCC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	8, 365, 374
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	3 cut(s)	88, 341, 428
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	7, 164, 363
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	23, 228
BssECI	CCNNGG	4 cut(s)	9, 174, 365, 403
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	365, 403
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	118, 167
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	215, 336, 424
BstDSI	CCRYGG	2 cut(s)	174, 403
BstF5I	GGATG	4 cut(s)	222, 310, 419, 473
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 341, 369
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	8, 251
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	166, 316, 319, 442
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	363
BtgI	CCRYGG	2 cut(s)	174, 403
BtsCI	GGATG	4 cut(s)	222, 310, 419, 473
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	223, 489
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	163, 181, 361, 362
CviAII	CATG	2 cut(s)	353, 404
CviJI	RGCY	9 cut(s)	6, 157, 214, 300, 344, 363, 372, 455, 477
CviKI_1	RGCY	9 cut(s)	6, 157, 214, 300, 344, 363, 372, 455, 477
DdeI	CTNAG	3 cut(s)	215, 336, 424
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DrdI	GACNNNNNNGTC	2 cut(s)	20, 137
DseDI	GACNNNNNNGTC	2 cut(s)	20, 137
Eco130I	CCWWGG	2 cut(s)	365, 403
Eco24I	GRGCYC	3 cut(s)	8, 365, 374
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	365, 403
EcoT38I	GRGCYC	3 cut(s)	8, 365, 374
ErhI	CCWWGG	2 cut(s)	365, 403
FaeI	CATG	2 cut(s)	356, 407
FaiI	YATR	5 cut(s)	354, 393, 405, 474, 505
FaqI	GGGAC	2 cut(s)	26, 176
FatI	CATG	2 cut(s)	352, 403
Fnu4HI	GCNGC	5 cut(s)	155, 330, 333, 342, 456
FokI	GGATG	4 cut(s)	209, 297, 406, 480
FriOI	GRGCYC	3 cut(s)	8, 365, 374
Fsp4HI	GCNGC	5 cut(s)	155, 330, 333, 342, 456
GluI	GCNGC	5 cut(s)	155, 330, 333, 342, 456
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	3 cut(s)	64, 234, 253
Hin1II	CATG	2 cut(s)	356, 407
HinfI	GANTC	3 cut(s)	194, 258, 416
HpaII	CCGG	3 cut(s)	64, 234, 253
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	74, 263
Hpy188III	TCNNGA	6 cut(s)	191, 205, 234, 282, 347, 413
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	118, 167
HpyCH4V	TGCA	2 cut(s)	55, 154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 341, 369
HpyF3I	CTNAG	3 cut(s)	215, 336, 424
Hsp92II	CATG	2 cut(s)	356, 407
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	4 cut(s)	166, 316, 319, 442
LweI	GCATC	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	6 cut(s)	133, 134, 257, 448, 451, 478
MhlI	GDGCHC	3 cut(s)	8, 365, 374
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	71, 95, 143, 172, 181, 235, 439
MroI	TCCGGA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	64, 234, 253
MspR9I	CCNGG	2 cut(s)	10, 253
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	338, 341, 369
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	356, 407
NlaIV	GGNNCC	3 cut(s)	7, 164, 363
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	194, 258
PkrI	GCNGC	5 cut(s)	156, 331, 334, 343, 457
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	7, 164, 363
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	4 cut(s)	163, 181, 361, 362
PvuII	CAGCTG	1 cut(s)	455
SatI	GCNGC	5 cut(s)	155, 330, 333, 342, 456
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	4 cut(s)	163, 181, 361, 362
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	10, 253
SduI	GDGCHC	3 cut(s)	8, 365, 374
SetI	ASST	7 cut(s)	87, 135, 159, 183, 450, 457, 479
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	2 cut(s)	163, 181
SmlI	CTYRAG	2 cut(s)	301, 345
SmoI	CTYRAG	2 cut(s)	301, 345
SsiI	CCGC	3 cut(s)	88, 341, 428
StyD4I	CCNGG	2 cut(s)	8, 251
StyI	CCWWGG	2 cut(s)	365, 403
TaaI	ACNGT	2 cut(s)	118, 167
TaqI	TCGA	2 cut(s)	24, 120
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	194, 258
TscAI	CASTG	2 cut(s)	223, 496
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	154, 329, 332, 455
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	223, 496
VpaK11BI	GGWCC	2 cut(s)	163, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.