Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Reverse (-)

44006510 .. 44019368

Gene Structure 12859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGCTCCTGGGACAACTGGGTCGAACACTCCCTTGACAAACTTGAACGCCTGCAACTCCTCCGGTCTCTTCGACCCATCTACTTCCGCAATGAACCTCAAAAACCCACCACCACCATCGAAGATGACGACCTCCAAGTCTTCCACCAAATGCAGCTCTGGGACCGTTCCTCCGTGGAGGTCCACATTCCCGAATCAACGTTCCAGAAATGGCTCAGTGACATCCCCAGTTCCGGAGATGAGGAAGATACCCGGAGATTCAGAAAGCTGTTGTTGTTCTCTGGAAATGATTATCTGGGCTTGAGTTCACATCCCACCATTGGAAATGCTGCTGCTAAGGCGGCTCAAGAACATGGAATGGGCCCAAGGGGCTCTGCTTTGATCTGTGGATATATAGATTACCATAGGCGACTGGAGTCATCCTTAGCGGACTTGAAGAAGAAAGAGGATTGCCTTCTTTGTCCTACAGGGTTTGCAGCCAATATGGCCTTGATGGTAGTGTTGGGAAATGTTGGCTCTCTCTTGGCTGCTGGAAAAACACCTTTAACTAATGAAAAGATTGCCATTTTTTCTGATGAACTGAACCATGCGTCCATAATTGATGGTATGTATATTTCAAGTGTTAGAAGTTGCAATCTCCAGAAAACCTGCAACCATGTCTTCTTGCTACTTTTACATCTGTTGTGTGTTATGAATCTCACAAAACAAAGAATAAGTCATACCCGTTGTATTTCAATAATTGTTCACTCATTCAATTCATTCTCATCATTTATCATCATCCAATGTTTTTTCTCTCTATGTTTGGGCATCAAGAAAAAAAAAATTCGCCCAAGGCATCAAAAAGTTGAGGACAAGCTCTGCGATCAATTGAAACGTTTGATTTTGATGGCCACTGGTACCTACCTCTCTCTCCCTGTGCCTCCTTGCCACCCTGAGCCCACTTGGAATAGCCATGGCTTCTCTAATTATTTTTTGCATACAAAGTACATATTATGTCCTGAAATTTCAGCTAATTGGACTCGTAACTCTTTACAATATACTGTAATCAACTCCTTTATAGAAATGCTAGCTCCGCCGTCGACCTCTTTTACTAACAACCTAAGGAGCATGAGCCGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

373

Amino Acids

42.45

Weight (kDa)

8.77

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 137
Acc36I	ACCTGC	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	896
AccB1I	GGYRCC	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	1079
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	4 cut(s)	88, 341, 428, 1073
AclI	AACGTT	2 cut(s)	200, 874
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	822, 1002
AfaI	GTAC	2 cut(s)	898, 986
AfiI	CCNNNNNNNGG	2 cut(s)	233, 320
AgsI	TTSAA	6 cut(s)	47, 436, 618, 735, 754, 871
AjnI	CCWGG	1 cut(s)	8
AloI	GAACNNNNNNTCC	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	157, 268, 856, 1010, 1070
AluI	AGCT	5 cut(s)	157, 268, 856, 1010, 1070
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	361, 486, 888
ApaI	GGGCCC	1 cut(s)	365
ApeKI	GCWGC	5 cut(s)	154, 329, 332, 476, 527
ApoI	RAATTY	2 cut(s)	822, 1002
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
Asp718I	GGTACC	1 cut(s)	896
AspS9I	GGNCC	4 cut(s)	163, 181, 361, 362
AsuC2I	CCSGG	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	1066
AvaII	GGWCC	2 cut(s)	163, 181
AxyI	CCTNAGG	1 cut(s)	1100
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	4 cut(s)	8, 365, 374, 939
BbsI	GAAGAC	2 cut(s)	133, 652
BbvI	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BccI	CCATC	5 cut(s)	86, 125, 487, 596, 880
BceAI	ACGGC	1 cut(s)	1060
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	656
BglI	GCCNNNNNGGC	2 cut(s)	369, 485
BisI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
BlsI	GCNGC	6 cut(s)	156, 331, 334, 343, 478, 529
Bme1390I	CCNGG	2 cut(s)	10, 253
Bme18I	GGWCC	2 cut(s)	163, 181
BmgT120I	GGNCC	4 cut(s)	163, 181, 361, 362
BmiI	GGNNCC	4 cut(s)	7, 164, 363, 898
BmrFI	CCNGG	2 cut(s)	10, 253
BmrI	ACTGGG	2 cut(s)	28, 222
BmsI	GCATC	2 cut(s)	816, 844
BmtI	GCTAGC	1 cut(s)	1070
BmuI	ACTGGG	2 cut(s)	28, 222
BoxI	GACNNNNGTC	1 cut(s)	415
BpiI	GAAGAC	2 cut(s)	133, 652
BpmI	CTGGAG	2 cut(s)	434, 623
Bpu10I	CCTNAGC	3 cut(s)	336, 424, 933
BpuEI	CTTGAG	2 cut(s)	322, 330
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	5 cut(s)	9, 174, 365, 830, 952
BsaWI	WCCGGW	2 cut(s)	63, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 320
Bse118I	RCCGGY	1 cut(s)	1113
Bse1I	ACTGG	4 cut(s)	23, 228, 417, 898
Bse21I	CCTNAGG	1 cut(s)	1100
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	5 cut(s)	9, 174, 365, 830, 952
BseGI	GGATG	4 cut(s)	222, 310, 419, 777
BseLI	CCNNNNNNNGG	2 cut(s)	233, 320
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	229, 924
BseNI	ACTGG	4 cut(s)	23, 228, 417, 898
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BshFI	GGCC	3 cut(s)	363, 488, 890
BshNI	GGYRCC	1 cut(s)	896
BsiSI	CCGG	4 cut(s)	64, 234, 253, 1114
BslFI	GGGAC	2 cut(s)	26, 176
BslI	CCNNNNNNNGG	2 cut(s)	233, 320
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	26, 176
BsnI	GGCC	3 cut(s)	363, 488, 890
Bso31I	GGTCTC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	4 cut(s)	8, 365, 374, 939
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	381, 862
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	4 cut(s)	88, 341, 428, 1073
BspANI	GGCC	3 cut(s)	363, 488, 890
BspCNI	CTCAG	2 cut(s)	228, 925
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	4 cut(s)	7, 164, 363, 898
BspMI	ACCTGC	1 cut(s)	656
BspOI	GCTAGC	1 cut(s)	1070
BspT107I	GGYRCC	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	1113
BsrI	ACTGG	4 cut(s)	23, 228, 417, 898
BssAI	RCCGGY	1 cut(s)	1113
BssECI	CCNNGG	5 cut(s)	9, 174, 365, 830, 952
BssMI	GATC	2 cut(s)	381, 862
BssT1I	CCWWGG	3 cut(s)	365, 830, 952
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	167, 1042
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	53, 1068, 1115
BstDEI	CTNAG	5 cut(s)	215, 336, 424, 933, 1100
BstDSI	CCRYGG	2 cut(s)	174, 952
BstF5I	GGATG	4 cut(s)	222, 310, 419, 777
BstKTI	GATC	2 cut(s)	384, 865
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	381, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 341, 369, 485, 1072
BstNI	CCWGG	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	8, 251
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BstV2I	GAAGAC	2 cut(s)	133, 652
Bsu36I	CCTNAGG	1 cut(s)	1100
BsuRI	GGCC	3 cut(s)	363, 488, 890
BtgI	CCRYGG	2 cut(s)	174, 952
BtsCI	GGATG	4 cut(s)	222, 310, 419, 777
BtsIMutI	CAGTG	2 cut(s)	223, 891
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	3 cut(s)	53, 1068, 1115
Cfr10I	RCCGGY	1 cut(s)	1113
Cfr13I	GGNCC	4 cut(s)	163, 181, 361, 362
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	897, 985
CviAII	CATG	5 cut(s)	353, 587, 656, 953, 1108
CviQI	GTAC	2 cut(s)	897, 985
DdeI	CTNAG	5 cut(s)	215, 336, 424, 933, 1100
DpnI	GATC	2 cut(s)	383, 864
DpnII	GATC	2 cut(s)	381, 862
DrdI	GACNNNNNNGTC	2 cut(s)	20, 137
DseDI	GACNNNNNNGTC	2 cut(s)	20, 137
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	1062
Eco130I	CCWWGG	3 cut(s)	365, 830, 952
Eco24I	GRGCYC	4 cut(s)	8, 365, 374, 939
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
Eco81I	CCTNAGG	1 cut(s)	1100
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	3 cut(s)	365, 830, 952
EcoT38I	GRGCYC	4 cut(s)	8, 365, 374, 939
ErhI	CCWWGG	3 cut(s)	365, 830, 952
FaeI	CATG	5 cut(s)	356, 590, 659, 956, 1111
FaqI	GGGAC	2 cut(s)	26, 176
FatI	CATG	5 cut(s)	352, 586, 655, 952, 1107
FblI	GTMKAC	1 cut(s)	1079
Fnu4HI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
FokI	GGATG	4 cut(s)	209, 297, 406, 764
FriOI	GRGCYC	4 cut(s)	8, 365, 374, 939
Fsp4HI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
GsuI	CTGGAG	2 cut(s)	434, 623
HaeIII	GGCC	3 cut(s)	363, 488, 890
HapII	CCGG	4 cut(s)	64, 234, 253, 1114
HgaI	GACGC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	356, 590, 659, 956, 1111
HincII	GTYRAC	1 cut(s)	1080
HindII	GTYRAC	1 cut(s)	1080
HinfI	GANTC	5 cut(s)	194, 258, 416, 694, 1018
HpaII	CCGG	4 cut(s)	64, 234, 253, 1114
Hpy166II	GTNNAC	4 cut(s)	184, 308, 745, 1080
Hpy188I	TCNGA	2 cut(s)	263, 574
Hpy188III	TCNNGA	8 cut(s)	191, 205, 234, 282, 347, 640, 811, 998
Hpy8I	GTNNAC	4 cut(s)	184, 308, 745, 1080
Hpy99I	CGWCG	1 cut(s)	1081
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	2 cut(s)	167, 1042
HpyCH4IV	ACGT	2 cut(s)	200, 874
HpyCH4V	TGCA	6 cut(s)	55, 154, 476, 633, 651, 976
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 341, 369, 485, 1072
HpyF3I	CTNAG	5 cut(s)	215, 336, 424, 933, 1100
HpySE526I	ACGT	2 cut(s)	200, 874
Hsp92II	CATG	5 cut(s)	356, 590, 659, 956, 1111
Kpn2I	TCCGGA	1 cut(s)	233
KpnI	GGTACC	1 cut(s)	900
KroI	GCCGGC	1 cut(s)	1113
KroNI	GCCGGC	1 cut(s)	1115
Kzo9I	GATC	2 cut(s)	381, 862
LmnI	GCTCC	3 cut(s)	11, 1075, 1104
Lsp1109I	GCAGC	5 cut(s)	166, 316, 319, 488, 514
LweI	GCATC	2 cut(s)	816, 844
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	2 cut(s)	200, 874
MaeIII	GTNAC	2 cut(s)	218, 1022
MalI	GATC	2 cut(s)	383, 864
MboI	GATC	2 cut(s)	381, 862
MboII	GAAGA	7 cut(s)	62, 133, 134, 257, 448, 451, 652
MfeI	CAATTG	1 cut(s)	866
MhlI	GDGCHC	4 cut(s)	8, 365, 374, 939
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	8 cut(s)	597, 738, 754, 822, 866, 964, 1002, 1012
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	425, 1012
Mox20I	TGGCCA	1 cut(s)	890
MroI	TCCGGA	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	1113
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	890
MspI	CCGG	4 cut(s)	64, 234, 253, 1114
MspR9I	CCNGG	2 cut(s)	10, 253
MunI	CAATTG	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	5 cut(s)	338, 341, 369, 485, 1072
NaeI	GCCGGC	1 cut(s)	1115
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	2 cut(s)	381, 862
NgoMIV	GCCGGC	1 cut(s)	1113
NheI	GCTAGC	1 cut(s)	1066
NlaIII	CATG	5 cut(s)	356, 590, 659, 956, 1111
NlaIV	GGNNCC	4 cut(s)	7, 164, 363, 898
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	1115
PfeI	GAWTC	3 cut(s)	194, 258, 694
PkrI	GCNGC	6 cut(s)	156, 331, 334, 343, 478, 529
PleI	GAGTC	2 cut(s)	424, 1012
PpsI	GAGTC	2 cut(s)	424, 1012
PshAI	GACNNNNGTC	1 cut(s)	415
Psp1406I	AACGTT	2 cut(s)	200, 874
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	7, 164, 363, 898
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	4 cut(s)	163, 181, 361, 362
RsaI	GTAC	2 cut(s)	898, 986
RsaNI	GTAC	2 cut(s)	897, 985
SalI	GTCGAC	1 cut(s)	1078
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
Sau3AI	GATC	2 cut(s)	381, 862
Sau96I	GGNCC	4 cut(s)	163, 181, 361, 362
SchI	GAGTC	2 cut(s)	425, 1012
ScrFI	CCNGG	2 cut(s)	10, 253
SduI	GDGCHC	4 cut(s)	8, 365, 374, 939
SfaNI	GCATC	2 cut(s)	816, 844
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	163, 181
SmlI	CTYRAG	2 cut(s)	301, 345
SmoI	CTYRAG	2 cut(s)	301, 345
Sse9I	AATT	8 cut(s)	597, 738, 754, 822, 866, 964, 1002, 1012
SsiI	CCGC	4 cut(s)	88, 341, 428, 1073
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	2 cut(s)	8, 251
StyI	CCWWGG	3 cut(s)	365, 830, 952
TaaI	ACNGT	2 cut(s)	167, 1042
TaiI	ACGT	2 cut(s)	203, 877
TaqI	TCGA	4 cut(s)	24, 73, 120, 1079
TasI	AATT	8 cut(s)	597, 738, 754, 822, 866, 964, 1002, 1012
TatI	WGTACW	1 cut(s)	984
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	194, 258, 694
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	223, 898
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	5 cut(s)	154, 329, 332, 476, 527
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	5 cut(s)	108, 567, 591, 707, 747
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	223, 898
VpaK11BI	GGWCC	2 cut(s)	163, 181
XapI	RAATTY	2 cut(s)	822, 1002
XmiI	GTMKAC	1 cut(s)	1079
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.