Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Forward (+)

21138523 .. 21138887

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGCTCCTGGGACAACTGGGTCGAACACTCCCTTGACAAACTTGAACGCCTGCAACTCCTCCGGTCTCTCCGACCCATCTACTTCCGCAATGAACCTCAAAAACCCACCACCACCATCGAAGATGACGACCTCCAAGTCTTCCACCAAATGCAGCTCTGGGACCGTTCCTCCGTGGAGGTCCACATTCCCGAATCAATGTTCCAGAAATGGCTCAGTGACATCCCCAGTTCCGGAGATGAGGAAGATACCCGGAGATTCAGAAAGCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

91

Amino Acids

11.03

Weight (kDa)

5.07

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 137
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	2 cut(s)	157, 268
AluI	AGCT	2 cut(s)	157, 268
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	163, 181
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	163, 181
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	86, 125
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	10, 253
Bme18I	GGWCC	2 cut(s)	163, 181
BmgT120I	GGNCC	2 cut(s)	163, 181
BmiI	GGNNCC	2 cut(s)	7, 164
BmrFI	CCNGG	2 cut(s)	10, 253
BmrI	ACTGGG	2 cut(s)	28, 222
BmuI	ACTGGG	2 cut(s)	28, 222
BpiI	GAAGAC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	9, 174
BsaWI	WCCGGW	2 cut(s)	63, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	23, 228
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	9, 174
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	23, 228
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	64, 234, 253
BslFI	GGGAC	2 cut(s)	26, 176
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	26, 176
Bso31I	GGTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	233
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	7, 164
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	23, 228
BssECI	CCNNGG	2 cut(s)	9, 174
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	8, 251
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	163, 181
CviJI	RGCY	4 cut(s)	6, 157, 214, 268
CviKI_1	RGCY	4 cut(s)	6, 157, 214, 268
DdeI	CTNAG	1 cut(s)	215
DrdI	GACNNNNNNGTC	2 cut(s)	20, 137
DseDI	GACNNNNNNGTC	2 cut(s)	20, 137
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
EcoRII	CCWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	8
FaqI	GGGAC	2 cut(s)	26, 176
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HapII	CCGG	3 cut(s)	64, 234, 253
HinfI	GANTC	2 cut(s)	194, 258
HpaII	CCGG	3 cut(s)	64, 234, 253
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	74, 263
Hpy188III	TCNNGA	3 cut(s)	191, 205, 234
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	55, 154
HpyF3I	CTNAG	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	9 cut(s)	4, 22, 65, 77, 145, 218, 241, 247, 266
Lsp1109I	GCAGC	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	133, 134, 257
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	6 cut(s)	71, 108, 143, 172, 181, 235
MroI	TCCGGA	1 cut(s)	233
MspI	CCGG	3 cut(s)	64, 234, 253
MspR9I	CCNGG	2 cut(s)	10, 253
MvaI	CCWGG	1 cut(s)	10
NciI	CCSGG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	7, 164
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	194, 258
PkrI	GCNGC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	7, 164
PspPI	GGNCC	2 cut(s)	163, 181
SatI	GCNGC	1 cut(s)	155
Sau96I	GGNCC	2 cut(s)	163, 181
ScrFI	CCNGG	2 cut(s)	10, 253
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	100, 135, 159, 183, 270
SinI	GGWCC	2 cut(s)	163, 181
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	8, 251
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	24, 120
TfiI	GAWTC	2 cut(s)	194, 258
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	163, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.