Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000259.1

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Reverse (-)

26145 .. 31341

Gene Structure 5197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000259.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcttcaattcgggttcaatagcgacttgggtgaagtagattatgaggtgtgtcaaactagtatcatgcatattcatttctattcagtggtgagcctagaggaaagatatgtctatcacggggtcttcgtcaaggtgactccatttcaccttgccttattcctattatgtaagaaggcattgtctagcaatatgatattcatgggtgcggaatcgagccattggaggcgcgccaccgacgcccctaacagagacgaaacggcctgtgcgtcgtcgtttcagggtgaatttggaatcggatcttccataggcatggatcctactctggatttcgaggaagaggaagatgaatatgacaaagtggcttcgggtgctgaagttgttgatgatgatcgtttgtttatggacgatgttaccaaccatggctcttatttgaactcttacgatgtattggttggtaaggattcggatcaacgttccagaaatggctcagtgacatccccagttccggaagatacccggagattcagaaagttgttgttgttctctggaaatgattatctgggcttgagttcacatcccaccattggaaatgctgctgctaaggcggctcaagaacatggaatgggcccaaggggctctgctttgatctgtggatatacagattaccataggactggagtcatccttagcggacttgaagaagaaagagggtttgcagccattatggccttgatggtagtgttgggaaatgttggctctctcttggctgctggaaaaacacctttaactaatgaaaagattgccattttttctgatgaactgaaccatgcgtccataattgatggagattacaaaggagacatggttgctcaccgaggaagggaagccatatgctgttcatggaacgccagaagtgcggcctctcatgaagctctcaacgttattgactcgtatacttccgtaaaatctaacagaagtttcattactgttgtacccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

334

Amino Acids

36.58

Weight (kDa)

5.01

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	956
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	4 cut(s)	209, 608, 693, 920
AclI	AACGTT	2 cut(s)	475, 942
AclWI	GGATC	4 cut(s)	307, 311, 324, 477
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	996
AfiI	CCNNNNNNNGG	3 cut(s)	508, 587, 883
AgsI	TTSAA	4 cut(s)	8, 19, 436, 701
AhlI	ACTAGT	1 cut(s)	59
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
AluBI	AGCT	1 cut(s)	935
AluI	AGCT	1 cut(s)	935
Alw26I	GTCTC	2 cut(s)	246, 855
AlwI	GGATC	4 cut(s)	307, 311, 324, 477
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	4 cut(s)	261, 628, 729, 921
ApaI	GGGCCC	1 cut(s)	632
ApeKI	GCWGC	4 cut(s)	596, 599, 719, 770
ApoI	RAATTY	1 cut(s)	287
AscI	GGCGCGCC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	231, 233
AspS9I	GGNCC	2 cut(s)	628, 629
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	6 cut(s)	44, 103, 140, 148, 296, 866
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	1 cut(s)	978
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	632, 641
BarI	GAAGNNNNNNTAC	2 cut(s)	970, 1002
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	583, 586, 731, 757
BccI	CCATC	2 cut(s)	730, 839
BceAI	ACGGC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	246, 855
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	3 cut(s)	60, 98, 186
BglI	GCCNNNNNGGC	2 cut(s)	636, 728
BisI	GCNGC	6 cut(s)	597, 600, 609, 720, 771, 921
BlsI	GCNGC	6 cut(s)	598, 601, 610, 721, 772, 922
Bme1390I	CCNGG	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	628, 629
BmiI	GGNNCC	2 cut(s)	318, 630
BmrFI	CCNGG	1 cut(s)	520
BmrI	ACTGGG	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	497
BoxI	GACNNNNGTC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	2 cut(s)	603, 689
BpuEI	CTTGAG	2 cut(s)	589, 597
BpuMI	CCSGG	1 cut(s)	520
BsaBI	GATNNNNATC	2 cut(s)	390, 468
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	421, 632, 877
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 587, 883
Bse1I	ACTGG	2 cut(s)	503, 682
Bse8I	GATNNNNATC	2 cut(s)	390, 468
BseAI	TCCGGA	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	421, 632, 877
BseGI	GGATG	3 cut(s)	497, 577, 684
BseJI	GATNNNNATC	2 cut(s)	390, 468
BseLI	CCNNNNNNNGG	3 cut(s)	508, 587, 883
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	503, 682
BsePI	GCGCGC	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	583, 586, 731, 757
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	263, 630, 731, 923
BsiSI	CCGG	2 cut(s)	509, 520
BslI	CCNNNNNNNGG	3 cut(s)	508, 587, 883
BsmAI	GTCTC	2 cut(s)	246, 855
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	263, 630, 731, 923
Bsp120I	GGGCCC	1 cut(s)	628
Bsp1286I	GDGCHC	2 cut(s)	632, 641
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	299, 316, 391, 469, 648
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	4 cut(s)	209, 608, 693, 920
BspANI	GGCC	4 cut(s)	263, 630, 731, 923
BspCNI	CTCAG	1 cut(s)	503
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	2 cut(s)	318, 630
BspPI	GGATC	4 cut(s)	307, 311, 324, 477
BsrI	ACTGG	2 cut(s)	503, 682
BssECI	CCNNGG	3 cut(s)	421, 632, 877
BssHII	GCGCGC	1 cut(s)	229
BssMI	GATC	5 cut(s)	299, 316, 391, 469, 648
BssNAI	GTATAC	1 cut(s)	957
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	421, 632
Bst1107I	GTATAC	1 cut(s)	957
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	490, 603, 689
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	3 cut(s)	497, 577, 684
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	231, 233
BstKTI	GATC	5 cut(s)	302, 319, 394, 472, 651
BstMAI	GTCTC	2 cut(s)	246, 855
BstMBI	GATC	5 cut(s)	299, 316, 391, 469, 648
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 371, 605, 608, 636, 728, 917
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	583, 586, 731, 757
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	299, 316
BstXI	CCANNNNNNTGG	2 cut(s)	313, 677
BstYI	RGATCY	2 cut(s)	299, 316
BstZ17I	GTATAC	1 cut(s)	957
BsuRI	GGCC	4 cut(s)	263, 630, 731, 923
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	497, 577, 684
BtsIMutI	CAGTG	2 cut(s)	93, 498
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	2 cut(s)	231, 233
Cfr13I	GGNCC	2 cut(s)	628, 629
CseI	GACGC	3 cut(s)	248, 258, 822
Csp6I	GTAC	1 cut(s)	995
CviAII	CATG	9 cut(s)	67, 202, 313, 422, 620, 830, 865, 903, 929
CviQI	GTAC	1 cut(s)	995
DdeI	CTNAG	3 cut(s)	490, 603, 689
DpnI	GATC	5 cut(s)	301, 318, 393, 471, 650
DpnII	GATC	5 cut(s)	299, 316, 391, 469, 648
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	421, 632
Eco24I	GRGCYC	2 cut(s)	632, 641
Eco57I	CTGAAG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	421, 632
EcoT22I	ATGCAT	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	632, 641
ErhI	CCWWGG	2 cut(s)	421, 632
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	9 cut(s)	70, 205, 316, 425, 623, 833, 868, 906, 932
FatI	CATG	9 cut(s)	66, 201, 312, 421, 619, 829, 864, 902, 928
FauNDI	CATATG	1 cut(s)	893
FblI	GTMKAC	1 cut(s)	956
Fnu4HI	GCNGC	6 cut(s)	597, 600, 609, 720, 771, 921
FokI	GGATG	3 cut(s)	484, 564, 671
FriOI	GRGCYC	2 cut(s)	632, 641
Fsp4HI	GCNGC	6 cut(s)	597, 600, 609, 720, 771, 921
FspBI	CTAG	3 cut(s)	60, 98, 186
GlaI	GCGC	2 cut(s)	230, 232
GluI	GCNGC	6 cut(s)	597, 600, 609, 720, 771, 921
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	4 cut(s)	263, 630, 731, 923
HapII	CCGG	2 cut(s)	509, 520
HgaI	GACGC	3 cut(s)	248, 258, 822
HhaI	GCGC	2 cut(s)	231, 233
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	9 cut(s)	70, 205, 316, 425, 623, 833, 868, 906, 932
Hin6I	GCGC	2 cut(s)	229, 231
HinP1I	GCGC	2 cut(s)	229, 231
HinfI	GANTC	7 cut(s)	139, 212, 294, 464, 525, 681, 950
HpaII	CCGG	2 cut(s)	509, 520
HphI	GGTGA	6 cut(s)	44, 103, 140, 148, 296, 866
Hpy166II	GTNNAC	2 cut(s)	575, 957
Hpy188I	TCNGA	4 cut(s)	299, 469, 530, 817
Hpy188III	TCNNGA	6 cut(s)	326, 480, 509, 549, 614, 929
Hpy8I	GTNNAC	2 cut(s)	575, 957
Hpy99I	CGWCG	3 cut(s)	242, 274, 277
HpyAV	CCTTC	2 cut(s)	169, 876
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4IV	ACGT	2 cut(s)	475, 942
HpyCH4V	TGCA	2 cut(s)	70, 719
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 371, 605, 608, 636, 728, 917
HpyF3I	CTNAG	3 cut(s)	490, 603, 689
HpySE526I	ACGT	2 cut(s)	475, 942
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	70, 205, 316, 425, 623, 833, 868, 906, 932
HspAI	GCGC	2 cut(s)	229, 231
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	299, 316, 391, 469, 648
Lsp1109I	GCAGC	4 cut(s)	583, 586, 731, 757
MaeI	CTAG	3 cut(s)	60, 98, 186
MaeII	ACGT	2 cut(s)	475, 942
MaeIII	GTNAC	3 cut(s)	136, 412, 493
MalI	GATC	5 cut(s)	301, 318, 393, 471, 650
MboI	GATC	5 cut(s)	299, 316, 391, 469, 648
MboII	GAAGA	7 cut(s)	118, 294, 350, 356, 524, 713, 716
MflI	RGATCY	2 cut(s)	299, 316
MhlI	GDGCHC	2 cut(s)	632, 641
MluCI	AATT	3 cut(s)	8, 287, 840
MlyI	GAGTC	3 cut(s)	133, 690, 944
MnlI	CCTC	8 cut(s)	40, 94, 219, 328, 334, 704, 872, 934
Mph1103I	ATGCAT	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	508
MseI	TTAA	2 cut(s)	788, 1003
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	2 cut(s)	509, 520
MspR9I	CCNGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	7 cut(s)	239, 371, 605, 608, 636, 728, 917
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	421
NdeI	CATATG	1 cut(s)	893
NdeII	GATC	5 cut(s)	299, 316, 391, 469, 648
NlaIII	CATG	9 cut(s)	70, 205, 316, 425, 623, 833, 868, 906, 932
NlaIV	GGNNCC	2 cut(s)	318, 630
NmuCI	GTSAC	2 cut(s)	136, 493
NsiI	ATGCAT	1 cut(s)	72
PagI	TCATGA	1 cut(s)	928
PalAI	GGCGCGCC	1 cut(s)	229
PauI	GCGCGC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 266
PfeI	GAWTC	4 cut(s)	212, 294, 464, 525
PkrI	GCNGC	6 cut(s)	598, 601, 610, 721, 772, 922
PleI	GAGTC	3 cut(s)	133, 689, 944
PpsI	GAGTC	3 cut(s)	133, 689, 944
PshAI	GACNNNNGTC	1 cut(s)	680
Psp1406I	AACGTT	2 cut(s)	475, 942
PspN4I	GGNNCC	2 cut(s)	318, 630
PspOMI	GGGCCC	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	628, 629
PsuI	RGATCY	2 cut(s)	299, 316
PteI	GCGCGC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	996
RsaNI	GTAC	1 cut(s)	995
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	788, 1003
SatI	GCNGC	6 cut(s)	597, 600, 609, 720, 771, 921
Sau3AI	GATC	5 cut(s)	299, 316, 391, 469, 648
Sau96I	GGNCC	2 cut(s)	628, 629
SchI	GAGTC	3 cut(s)	133, 690, 944
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	632, 641
SetI	ASST	7 cut(s)	51, 138, 153, 478, 787, 937, 945
SgsI	GGCGCGCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	568, 612
SmoI	CTYRAG	2 cut(s)	568, 612
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	3 cut(s)	8, 287, 840
SsiI	CCGC	4 cut(s)	209, 608, 693, 920
SspMI	CTAG	3 cut(s)	60, 98, 186
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	2 cut(s)	421, 632
TaaI	ACNGT	1 cut(s)	991
TaiI	ACGT	2 cut(s)	478, 945
TaqI	TCGA	2 cut(s)	215, 333
TasI	AATT	3 cut(s)	8, 287, 840
TauI	GCSGC	2 cut(s)	611, 923
TfiI	GAWTC	4 cut(s)	212, 294, 464, 525
Tru1I	TTAA	2 cut(s)	788, 1003
Tru9I	TTAA	2 cut(s)	788, 1003
TscAI	CASTG	2 cut(s)	93, 498
TseFI	GTSAC	2 cut(s)	136, 493
TseI	GCWGC	4 cut(s)	596, 599, 719, 770
Tsp45I	GTSAC	2 cut(s)	136, 493
TspDTI	ATGAA	8 cut(s)	65, 190, 363, 810, 834, 891, 945, 973
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	2 cut(s)	93, 498
XapI	RAATTY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	956
XspI	CTAG	3 cut(s)	60, 98, 186
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.