Prupe.2G274800_v2.0.a1

2-amino-3-ketobutyrate coenzyme A ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
27707169 .. 27712762
5594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G274800.1

Sequence Viewer

Length: 1392 bp
ATGTTGAGGTCGTGGGATAATGGGGTCGAAGAGGCTCTTCAGAAACTTGAACACCTTCAACTCCTTCGTTCTCTCAGACCCATTTACCTCCAAAATGGACCAATCCAAGAAGCCCAAAACCCCGTCGATGGTGAATTCCATGTGTTCGATGAAATGCAGCCGTGGGACCGATCCTCTGTGGAGGTCCACATTCCTGAACCCACGTTCCAGAAATGGCTCCACGACATTCCCAGTTCCGGAGATGAGGAAGGTACCCATAAGTTCAGAAAGCTGCTACTATTCTCTGGGAATGACTATTTGGGCCTGAGCTCACATCCTACCATTGGAAAAGCTGCTTCCAAGGCAGCCCTAGAACATGGGATGGGCCCCAGGGGCTCTGCTTTAATCTGCGGATATACCGATTACCATAGGCGACTCGAGTCATGCATTGCAGAATTAAAGAAGAAAGAGGATTGCCTTCTTTGTCCCACAGGATTTGCAGCCAATATGGCCTTGATGGTAGCTTTGGGAAATGTTGGCTCTCTCTTGGCTGCTGGAAAAACTCCTTTAACTAATGAAAAAATTGCCATTTTTTCTGATGCACTGAACCATGCGTCAATAATCGATGGTATTCGTCTTGCTGAACGACAAAAATCTGTAGAGATATTCATCTATAGACATTGCGACATGACTCACCTTAATGCATTGTTATCAAGTTGCACAATGAGGAAGAAAGTTGTCGTGACTGATAGCTTGTTTAGTATGGACGGAGACTTTGCACCAATGATTGAGCTTGTGAAGCTACGCAAAGAGCATGGCTTTCTGTTAGTTATTGATGATGCTCATGGAACATTTGTTTGTGGAAAAAATGGTGGCGGAGTGGCAGAGCAATACAATTGTGAAAGAGATGTTGACATATGTGTTGGGACTTTGAGTAAGGCTGCAGGTTGCCATGGCGGATTCATAGCATGCAGCAAAAGGTGGAAGCAACTCATACAATCAAGGGGTCGGTCTTTTATATTTTCAACTGCTACGCCGATACCAATTGTTGCTGCTGCCCGTGCTTCTCTTATTGTGGCAAGAAAGGAAACATGGCGTAGAAGGGAAATTTGGAATCGGGTGCAAGACTTTCGTGTTCTCACTGGAATCCCCATAAATAGTCCCATAATATCTCTTATCGTAGGGAGCGAAGAGAAGGCTCTGCAAGCAAGCCAGAGTTTGTTGAAATCTGGTTTCCATGTGACTGCAATTAGACCCCCAACAGTGCCACCCAACTCATGCAGGCTACGCGTGACATTGAGCGCAACGCACACAAGAGACGATATTGAGAGGTTCACAGCCGCACTCTCCCTTTGTGTCAATTTTCAAGAAATTGGCATCCACGGCTCAAATGGTGGATATGCAAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

51.13

Weight (kDa)

8.36

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 914
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 1 cut(s) 1269
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 4 cut(s) 390, 855, 936, 1320
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 134, 1086
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 3 cut(s) 128, 236, 323
AflIII ACRYGT 1 cut(s) 1267
AgsI TTSAA 5 cut(s) 50, 59, 1005, 1204, 1346
AjnI CCWGG 1 cut(s) 368
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 1072, 1104
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 7 cut(s) 271, 309, 332, 503, 732, 772, 781
AluI AGCT 7 cut(s) 271, 309, 332, 503, 732, 772, 781
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 744, 1290
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 3 cut(s) 301, 364, 489
ApaI GGGCCC 1 cut(s) 368
ApoI RAATTY 2 cut(s) 134, 1086
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
Asp700I GAANNNNTTC 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 1283
AspS9I GGNCC 6 cut(s) 98, 166, 184, 301, 364, 365
AsuHPI GGTGA 2 cut(s) 143, 665
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 3 cut(s) 98, 166, 184
BaeGI GKGCMC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 3 cut(s) 311, 368, 377
Bbv12I GWGCWC 1 cut(s) 311
BccI CCATC 4 cut(s) 122, 355, 490, 599
BceAI ACGGC 2 cut(s) 145, 1378
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 744, 1290
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 3 cut(s) 636, 652, 921
BfuAI ACCTGC 1 cut(s) 914
BglI GCCNNNNNGGC 2 cut(s) 372, 488
Bme1390I CCNGG 1 cut(s) 370
Bme18I GGWCC 3 cut(s) 98, 166, 184
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 6 cut(s) 98, 166, 184, 301, 364, 365
BmiI GGNNCC 5 cut(s) 167, 218, 253, 366, 367
BmrFI CCNGG 1 cut(s) 370
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 3 cut(s) 568, 808, 1365
BmuI ACTGGG 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 603
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 6 cut(s) 161, 339, 368, 369, 931, 1360
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 236, 323
Bse1I ACTGG 2 cut(s) 231, 1126
Bse3DI GCAATG 2 cut(s) 426, 658
Bse8I GATNNNNATC 1 cut(s) 647
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 6 cut(s) 161, 339, 368, 369, 931, 1360
BseGI GGATG 3 cut(s) 313, 366, 1356
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 3 cut(s) 128, 236, 323
BseMI GCAATG 2 cut(s) 426, 658
BseMII CTCAG 2 cut(s) 88, 296
BseNI ACTGG 2 cut(s) 231, 1126
BseSI GKGCMC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 1269
BshFI GGCC 3 cut(s) 303, 366, 491
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 4 cut(s) 179, 450, 919, 1125
BslI CCNNNNNNNGG 3 cut(s) 128, 236, 323
BsmAI GTCTC 2 cut(s) 744, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 4 cut(s) 179, 450, 919, 1125
BsnI GGCC 3 cut(s) 303, 366, 491
BsoBI CYCGRG 1 cut(s) 416
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 311, 368, 377
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 931
BspACI CCGC 4 cut(s) 390, 855, 936, 1320
BspANI GGCC 3 cut(s) 303, 366, 491
BspCNI CTCAG 2 cut(s) 87, 297
BspDI ATCGAT 1 cut(s) 603
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 1 cut(s) 1269
BspLI GGNNCC 5 cut(s) 167, 218, 253, 366, 367
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 426, 658
BsrI ACTGG 2 cut(s) 231, 1126
BssECI CCNNGG 6 cut(s) 161, 339, 368, 369, 931, 1360
BssMI GATC 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 339, 931
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 1243
Bst6I CTCTTC 3 cut(s) 24, 42, 1164
BstC8I GCNNGC 4 cut(s) 949, 1185, 1189, 1262
BstDEI CTNAG 2 cut(s) 74, 305
BstDSI CCRYGG 3 cut(s) 161, 931, 1360
BstF5I GGATG 3 cut(s) 313, 366, 1356
BstFNI CGCG 1 cut(s) 1269
BstHHI GCGC 1 cut(s) 1283
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 2 cut(s) 744, 1290
BstMBI GATC 1 cut(s) 170
BstMWI GCNNNNNNNGC 8 cut(s) 341, 372, 488, 778, 1040, 1184, 1266, 1362
BstNI CCWGG 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 951
BstPAI GACNNNNGTC 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 368
BstSFI CTRYAG 3 cut(s) 636, 652, 921
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 1 cut(s) 1269
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 3 cut(s) 303, 366, 491
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 3 cut(s) 161, 931, 1360
BtsCI GGATG 3 cut(s) 313, 366, 1356
BtsIMutI CAGTG 3 cut(s) 581, 1119, 1248
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 4 cut(s) 949, 1185, 1189, 1262
CfoI GCGC 1 cut(s) 1283
Cfr13I GGNCC 6 cut(s) 98, 166, 184, 301, 364, 365
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 1 cut(s) 582
Csp6I GTAC 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 74, 305
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 24, 42, 1164
EarI CTCTTC 3 cut(s) 24, 42, 1164
EciI GGCGGA 2 cut(s) 870, 951
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 339, 931
Eco24I GRGCYC 3 cut(s) 311, 368, 377
Eco47I GGWCC 3 cut(s) 98, 166, 184
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 339, 931
EcoT22I ATGCAT 2 cut(s) 428, 685
EcoT38I GRGCYC 3 cut(s) 311, 368, 377
ErhI CCWWGG 2 cut(s) 339, 931
Esp3I CGTCTC 1 cut(s) 1290
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 4 cut(s) 179, 450, 919, 1125
FauNDI CATATG 1 cut(s) 896
FokI GGATG 3 cut(s) 300, 373, 1343
FriOI GRGCYC 3 cut(s) 311, 368, 377
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 1282
HaeIII GGCC 3 cut(s) 303, 366, 491
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 582
HhaI GCGC 1 cut(s) 1283
Hin6I GCGC 1 cut(s) 1281
HinP1I GCGC 1 cut(s) 1281
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 6 cut(s) 414, 419, 670, 939, 1093, 1125
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 143, 665
Hpy166II GTNNAC 3 cut(s) 187, 892, 1314
Hpy188I TCNGA 4 cut(s) 42, 77, 266, 577
Hpy188III TCNNGA 5 cut(s) 194, 208, 237, 721, 1346
Hpy8I GTNNAC 3 cut(s) 187, 892, 1314
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 6 cut(s) 65, 74, 242, 467, 1074, 1168
HpyCH4III ACNGT 1 cut(s) 1243
HpyCH4IV ACGT 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 8 cut(s) 341, 372, 488, 778, 1040, 1184, 1266, 1362
HpyF3I CTNAG 2 cut(s) 74, 305
HpySE526I ACGT 1 cut(s) 203
HspAI GCGC 1 cut(s) 1281
Kpn2I TCCGGA 1 cut(s) 236
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 170
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 222, 1164
LweI GCATC 3 cut(s) 568, 808, 1365
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 721, 1219, 1270
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 5 cut(s) 29, 41, 454, 721, 1181
MfeI CAATTG 2 cut(s) 874, 1023
MhlI GDGCHC 3 cut(s) 311, 368, 377
MluCI AATT 9 cut(s) 134, 434, 561, 874, 1023, 1086, 1227, 1339, 1350
MluI ACGCGT 1 cut(s) 1267
MlyI GAGTC 3 cut(s) 408, 428, 664
MnlI CCTC 8 cut(s) 25, 98, 175, 184, 238, 442, 699, 1302
Mph1103I ATGCAT 2 cut(s) 428, 685
MroI TCCGGA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 4 cut(s) 383, 437, 548, 678
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 370
MunI CAATTG 2 cut(s) 874, 1023
MvaI CCWGG 1 cut(s) 370
MvnI CGCG 1 cut(s) 1269
MwoI GCNNNNNNNGC 8 cut(s) 341, 372, 488, 778, 1040, 1184, 1266, 1362
NcoI CCATGG 1 cut(s) 931
NdeI CATATG 1 cut(s) 896
NdeII GATC 1 cut(s) 170
NlaIV GGNNCC 5 cut(s) 167, 218, 253, 366, 367
NmuCI GTSAC 3 cut(s) 721, 1219, 1270
NsiI ATGCAT 2 cut(s) 428, 685
NspI RCATGY 1 cut(s) 951
PaeI GCATGC 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 416
PasI CCCWGGG 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 1164
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 939, 1093, 1125
PleI GAGTC 3 cut(s) 408, 427, 664
PpsI GAGTC 3 cut(s) 408, 427, 664
PshAI GACNNNNGTC 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 5 cut(s) 167, 218, 253, 366, 367
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 6 cut(s) 98, 166, 184, 301, 364, 365
PspXI VCTCGAGB 1 cut(s) 416
PstI CTGCAG 1 cut(s) 925
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 383, 437, 548, 678
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 6 cut(s) 98, 166, 184, 301, 364, 365
SchI GAGTC 3 cut(s) 408, 428, 664
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 3 cut(s) 311, 368, 377
SfaNI GCATC 3 cut(s) 568, 808, 1365
SfcI CTRYAG 3 cut(s) 636, 652, 921
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 3 cut(s) 98, 166, 184
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 951
Sse9I AATT 9 cut(s) 134, 434, 561, 874, 1023, 1086, 1227, 1339, 1350
SsiI CCGC 4 cut(s) 390, 855, 936, 1320
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 368
StyI CCWWGG 2 cut(s) 339, 931
TaaI ACNGT 1 cut(s) 1243
TaiI ACGT 1 cut(s) 206
TaqI TCGA 5 cut(s) 27, 126, 147, 417, 603
TaqII GACCGA 2 cut(s) 183, 978
TasI AATT 9 cut(s) 134, 434, 561, 874, 1023, 1086, 1227, 1339, 1350
TauI GCSGC 1 cut(s) 1322
TfiI GAWTC 3 cut(s) 939, 1093, 1125
Tru1I TTAA 4 cut(s) 383, 437, 548, 678
Tru9I TTAA 4 cut(s) 383, 437, 548, 678
TscAI CASTG 3 cut(s) 588, 1126, 1248
TseFI GTSAC 3 cut(s) 721, 1219, 1270
Tsp45I GTSAC 3 cut(s) 721, 1219, 1270
TspDTI ATGAA 4 cut(s) 165, 570, 637, 931
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 3 cut(s) 588, 1126, 1248
VpaK11BI GGWCC 3 cut(s) 98, 166, 184
XapI RAATTY 2 cut(s) 134, 1086
XceI RCATGY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1367
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 2 cut(s) 428, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.