Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Forward (+)

1776742 .. 1781473

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGATGAGGTCGTGGGATCACTGGGTTGAAGAGGCTCTTCAGAAACTCCAACACCTGCAACTGGTTGGGTCTCTCAGACCCATTCACCTCCATAGTGCACCAGCTCTAGAAGCACAAAAACCTATTGAAGATGAATTCAATGTGTTCGATGAACTGCAACCATGGGATCGATCCGCTGTGCAGGTTCAAATTACTGAAGCCACATTCCAAAAATGGGTCCATGACATTCCCAGTTCAGGGGACGATGATGGTATCCAGAGTTTCAAAAAGCTGCTACTGTTTTCTACGAATGATTATTTGGGCTTGGGTTCACATCCTACTATTGGAAAAGCTGCAGCTAAGGTTGCCCTAGAACACGGAATGGGCCCAAGGAGTTCTGCTTTAATCTGTGGATATACTGATTACCATAGGTTACTCGAGTCATGCCTGGCAGACTTGAAGGAGAAAGAGGATTGTCTTCTTTGTCCAACGGGATTTGCAGCCAATACGTCCTTGATGGTAGCTTTGGGATCTGTTGGCACTCTCTTGGCTGCTGGCAAAACACCTTTACCTGATGAAAAGATTGCCATTTTTTCTGATGCACTGAACCATGCGTCAATAATTGATGGTATTCGTATTGCTGACAAGCAAAAGTCTGTACAGATATTCGTCTATAGACATTGTGACATGAATCACCTTGATGCCTTGTTATCAAGTTGCAAAATTATGAAGAAAGTGGTCGTGACTGATAGCGTGTTTAGTATGGACGGAGACGTTGCACCAATGGTTGAGCTTGTGAAGCTACGCAAAGAGCATGACTTTTTGTTAGTTATTGATGATGCTCATGGTACACTGGTTTTTGGAAAAAATGGCGGAGGAGTAGCTGAGGAATTCAACTGTGAAAGAGATGTTGATATTTGTGTTGGCACTTTGAGTAAAGCTGTTGGTTGCCAAGGCGGATTCATTGCATGCAGCAAAAAGTGGAAGCAGCTCATACAATCAAGGGGTCGCTCTTTTATATTTTCCACATCTACGCCAGTACCAATTGCTGCTGCTGCCCATGCTGCTCTTATTGTGGCAAGAAAGGAAACATGGCGTAGACGGGCAATTTGGAATCGGGTGGAAGACTTTCGTGCTCTTACTGGGATCCCCATAAAAAGTCCAATAATCTCTCTTGTCGTAGGGAGTGAAGAGAAGGCTCTACAAGCTAGCCAGAGTTTATTAAAATACGGTTTCCATGTCACTGCAATCAGGCCTCCATCAGTGCCACCCAACTCATGCAGACTACGAGTGACATTGAGCGCAATGCACACAAGGCACGATATTGAGAAGCTCGTGGATGCACTCTCCCGTTGCATCAATTTCCAAGAATTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

453

Amino Acids

49.83

Weight (kDa)

6.78

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	2 cut(s)	63, 172
AccI	GTMKAC	1 cut(s)	1078
AciI	CCGC	3 cut(s)	174, 852, 936
AclWI	GGATC	6 cut(s)	24, 165, 174, 517, 1120, 1133
AcsI	RAATTY	2 cut(s)	134, 869
AcuI	CTGAAG	2 cut(s)	23, 216
AfaI	GTAC	3 cut(s)	639, 829, 1020
AfiI	CCNNNNNNNGG	5 cut(s)	61, 214, 236, 237, 323
AgsI	TTSAA	7 cut(s)	29, 128, 139, 188, 265, 439, 874
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
Alw21I	GWGCWC	2 cut(s)	100, 1117
Alw26I	GTCTC	2 cut(s)	75, 744
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	6 cut(s)	24, 165, 174, 517, 1120, 1133
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	364, 1232
ApaI	GGGCCC	1 cut(s)	368
ApaLI	GTGCAC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	134, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	1071, 1103
Asp700I	GAANNNNTTC	1 cut(s)	1107
AspLEI	GCGC	1 cut(s)	1283
AspS9I	GGNCC	3 cut(s)	217, 364, 365
AsuHPI	GGTGA	2 cut(s)	77, 665
AsuNHI	GCTAGC	1 cut(s)	1187
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	2 cut(s)	100, 368
BaeI	ACNNNNGTAYC	4 cut(s)	819, 852, 1002, 1035
BamHI	GGATCC	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	1313
BbsI	GAAGAC	2 cut(s)	449, 1110
Bbv12I	GWGCWC	2 cut(s)	100, 1117
BbvCI	CCTCAGC	1 cut(s)	864
BccI	CCATC	4 cut(s)	242, 490, 599, 1246
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	75, 744
BfaI	CTAG	3 cut(s)	107, 350, 1188
BfmI	CTRYAG	2 cut(s)	333, 652
BfuAI	ACCTGC	2 cut(s)	63, 172
BfuI	GTATCC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	217, 364, 365
BmiI	GGNNCC	3 cut(s)	218, 366, 1127
BmrFI	CCNGG	1 cut(s)	428
BmrI	ACTGGG	3 cut(s)	31, 225, 1131
BmsI	GCATC	5 cut(s)	568, 670, 808, 1309, 1344
BmtI	GCTAGC	1 cut(s)	1191
BmuI	ACTGGG	3 cut(s)	31, 225, 1131
BpiI	GAAGAC	2 cut(s)	449, 1110
Bpu10I	CCTNAGC	2 cut(s)	339, 864
Bsa29I	ATCGAT	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	161, 368, 931
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 214, 236, 237, 323
Bse1I	ACTGG	6 cut(s)	26, 66, 231, 837, 1016, 1126
Bse3DI	GCAATG	2 cut(s)	942, 1290
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	161, 368, 931
BseGI	GGATG	2 cut(s)	313, 1324
BseLI	CCNNNNNNNGG	5 cut(s)	61, 214, 236, 237, 323
BseMI	GCAATG	2 cut(s)	942, 1290
BseMII	CTCAG	2 cut(s)	88, 855
BseNI	ACTGG	6 cut(s)	26, 66, 231, 837, 1016, 1126
BseRI	GAGGAG	1 cut(s)	870
BseSI	GKGCMC	2 cut(s)	100, 368
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	366, 1234
BshVI	ATCGAT	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	100, 1117
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	5 cut(s)	61, 214, 236, 237, 323
BsmAI	GTCTC	2 cut(s)	75, 744
BsmBI	CGTCTC	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	366, 1234
Bso31I	GGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	416
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	100, 368, 1117
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	16, 166, 170, 509, 1125
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	3 cut(s)	174, 852, 936
BspANI	GGCC	2 cut(s)	366, 1234
BspCNI	CTCAG	2 cut(s)	87, 856
BspDI	ATCGAT	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	218, 366, 1127
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	63, 172
BspOI	GCTAGC	1 cut(s)	1191
BspPI	GGATC	6 cut(s)	24, 165, 174, 517, 1120, 1133
BspQI	GCTCTTC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	942, 1290
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	6 cut(s)	26, 66, 231, 837, 1016, 1126
BssECI	CCNNGG	3 cut(s)	161, 368, 931
BssMI	GATC	5 cut(s)	16, 166, 170, 509, 1125
BssSI	CACGAG	1 cut(s)	1313
BssT1I	CCWWGG	3 cut(s)	161, 368, 931
Bst2BI	CACGAG	1 cut(s)	1313
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	279, 878, 1211
Bst6I	CTCTTC	3 cut(s)	24, 42, 1164
BstAUI	TGTACA	1 cut(s)	637
BstC8I	GCNNGC	3 cut(s)	535, 949, 1189
BstDEI	CTNAG	3 cut(s)	74, 339, 864
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	313, 1324
BstHHI	GCGC	1 cut(s)	1283
BstKTI	GATC	5 cut(s)	19, 169, 173, 512, 1128
BstMAI	GTCTC	2 cut(s)	75, 744
BstMBI	GATC	5 cut(s)	16, 166, 170, 509, 1125
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 344, 778, 1034, 1040, 1043, 1184, 1294
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	951
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	333, 652
BstSLI	GKGCMC	2 cut(s)	100, 368
BstV2I	GAAGAC	2 cut(s)	449, 1110
BstX2I	RGATCY	2 cut(s)	509, 1125
BstYI	RGATCY	2 cut(s)	509, 1125
Bsu15I	ATCGAT	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	366, 1234
BsuTUI	ATCGAT	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	313, 1324
BtsI	GCAGTG	1 cut(s)	1221
BtsIMutI	CAGTG	5 cut(s)	19, 581, 830, 1221, 1248
BveI	ACCTGC	2 cut(s)	63, 172
Cac8I	GCNNGC	3 cut(s)	535, 949, 1189
CfoI	GCGC	1 cut(s)	1283
Cfr13I	GGNCC	3 cut(s)	217, 364, 365
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	3 cut(s)	638, 828, 1019
CviQI	GTAC	3 cut(s)	638, 828, 1019
DdeI	CTNAG	3 cut(s)	74, 339, 864
DpnI	GATC	5 cut(s)	18, 168, 172, 511, 1127
DpnII	GATC	5 cut(s)	16, 166, 170, 509, 1125
Eam1104I	CTCTTC	3 cut(s)	24, 42, 1164
EarI	CTCTTC	3 cut(s)	24, 42, 1164
EciI	GGCGGA	2 cut(s)	867, 951
Eco130I	CCWWGG	3 cut(s)	161, 368, 931
Eco147I	AGGCCT	1 cut(s)	1234
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	23, 216
Eco88I	CYCGRG	1 cut(s)	416
EcoRI	GAATTC	2 cut(s)	134, 869
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	3 cut(s)	161, 368, 931
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	3 cut(s)	161, 368, 931
Esp3I	CGTCTC	1 cut(s)	744
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	1078
FokI	GGATG	2 cut(s)	300, 1331
FriOI	GRGCYC	1 cut(s)	368
FspBI	CTAG	3 cut(s)	107, 350, 1188
GlaI	GCGC	1 cut(s)	1282
HaeIII	GGCC	2 cut(s)	366, 1234
HgaI	GACGC	1 cut(s)	582
HhaI	GCGC	1 cut(s)	1283
Hin6I	GCGC	1 cut(s)	1281
HinP1I	GCGC	1 cut(s)	1281
HinfI	GANTC	4 cut(s)	419, 670, 939, 1093
HphI	GGTGA	2 cut(s)	77, 665
Hpy166II	GTNNAC	4 cut(s)	98, 311, 830, 1079
Hpy188I	TCNGA	3 cut(s)	42, 77, 577
Hpy188III	TCNNGA	3 cut(s)	107, 256, 721
Hpy8I	GTNNAC	4 cut(s)	98, 311, 830, 1079
HpyAV	CCTTC	2 cut(s)	433, 1168
HpyCH4III	ACNGT	3 cut(s)	279, 878, 1211
HpyCH4IV	ACGT	2 cut(s)	488, 753
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 344, 778, 1034, 1040, 1043, 1184, 1294
HpyF3I	CTNAG	3 cut(s)	74, 339, 864
HpySE526I	ACGT	2 cut(s)	488, 753
HspAI	GCGC	1 cut(s)	1281
Kzo9I	GATC	5 cut(s)	16, 166, 170, 509, 1125
LguI	GCTCTTC	1 cut(s)	42
LweI	GCATC	5 cut(s)	568, 670, 808, 1309, 1344
MaeI	CTAG	3 cut(s)	107, 350, 1188
MaeII	ACGT	2 cut(s)	488, 753
MaeIII	GTNAC	5 cut(s)	411, 662, 721, 1219, 1270
MalI	GATC	5 cut(s)	18, 168, 172, 511, 1127
MboI	GATC	5 cut(s)	16, 166, 170, 509, 1125
MboII	GAAGA	7 cut(s)	29, 41, 140, 449, 721, 1115, 1181
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	2 cut(s)	509, 1125
MhlI	GDGCHC	3 cut(s)	100, 368, 1117
MluCI	AATT	9 cut(s)	134, 189, 600, 702, 869, 1023, 1086, 1339, 1349
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	73, 491
MnlI	CCTC	6 cut(s)	25, 98, 442, 848, 859, 1245
MroXI	GAANNNNTTC	1 cut(s)	1107
MseI	TTAA	2 cut(s)	383, 1202
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	1023
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	8 cut(s)	110, 344, 778, 1034, 1040, 1043, 1184, 1294
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	16, 166, 170, 509, 1125
NheI	GCTAGC	1 cut(s)	1187
NlaIV	GGNNCC	3 cut(s)	218, 366, 1127
NmuCI	GTSAC	4 cut(s)	662, 721, 1219, 1270
NspI	RCATGY	1 cut(s)	951
PaeI	GCATGC	1 cut(s)	951
PaeR7I	CTCGAG	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	1234
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	1107
PfeI	GAWTC	3 cut(s)	670, 939, 1093
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	218, 366, 1127
PspOMI	GGGCCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	217, 364, 365
PspXI	VCTCGAGB	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	2 cut(s)	509, 1125
RsaI	GTAC	3 cut(s)	639, 829, 1020
RsaNI	GTAC	3 cut(s)	638, 828, 1019
RseI	CAYNNNNRTG	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	383, 1202
Sau3AI	GATC	5 cut(s)	16, 166, 170, 509, 1125
Sau96I	GGNCC	3 cut(s)	217, 364, 365
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	3 cut(s)	100, 368, 1117
SfaNI	GCATC	5 cut(s)	568, 670, 808, 1309, 1344
SfcI	CTRYAG	2 cut(s)	333, 652
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	951
Sse9I	AATT	9 cut(s)	134, 189, 600, 702, 869, 1023, 1086, 1339, 1349
SseBI	AGGCCT	1 cut(s)	1234
SsiI	CCGC	3 cut(s)	174, 852, 936
SspMI	CTAG	3 cut(s)	107, 350, 1188
StuI	AGGCCT	1 cut(s)	1234
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	3 cut(s)	161, 368, 931
TaaI	ACNGT	3 cut(s)	279, 878, 1211
TaiI	ACGT	2 cut(s)	491, 756
TaqI	TCGA	3 cut(s)	147, 169, 417
TasI	AATT	9 cut(s)	134, 189, 600, 702, 869, 1023, 1086, 1339, 1349
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	670, 939, 1093
Tru1I	TTAA	2 cut(s)	383, 1202
Tru9I	TTAA	2 cut(s)	383, 1202
TscAI	CASTG	5 cut(s)	26, 588, 837, 1228, 1248
TseFI	GTSAC	4 cut(s)	662, 721, 1219, 1270
Tsp45I	GTSAC	4 cut(s)	662, 721, 1219, 1270
TspDTI	ATGAA	6 cut(s)	147, 165, 570, 683, 722, 931
TspGWI	ACGGA	2 cut(s)	372, 762
TspRI	CASTG	5 cut(s)	26, 588, 837, 1228, 1248
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	134, 869
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	1 cut(s)	951
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	1078
XmnI	GAANNNNTTC	1 cut(s)	1107
XspI	CTAG	3 cut(s)	107, 350, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.