mRNA 3'-splice site recognition
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06890 |
| malus_domestica | MD10G1329400.v1.1 |
| pyrus_communis | pycom05g32220 pycom10g27920 |
| rosa_chinensis | RchiOBHm_Chr7g0191091 |
| rosa_laevigata | RLG00000004475 |
| rosa_multiflora | Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00264050 Rroxscaffold_5G00351920 |
| rosa_rugosa | Rorug01G0317000 Rorug01G0317100 |
| rosa_samantha | Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100 |
| rosa_wichuraiana | Rw1G028860 Rw7G010070 Rw7G010160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 164 |
| AatII | GACGTC | 1 cut(s) | 21 |
| Acc36I | ACCTGC | 1 cut(s) | 164 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AgsI | TTSAA | 1 cut(s) | 82 |
| AsuC2I | CCSGG | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 1 cut(s) | 188 |
| BccI | CCATC | 1 cut(s) | 20 |
| BcnI | CCSGG | 1 cut(s) | 124 |
| BfuAI | ACCTGC | 1 cut(s) | 164 |
| Bme1390I | CCNGG | 1 cut(s) | 124 |
| BmrFI | CCNGG | 1 cut(s) | 124 |
| BpuMI | CCSGG | 1 cut(s) | 124 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BseGI | GGATG | 1 cut(s) | 180 |
| BsgI | GTGCAG | 1 cut(s) | 71 |
| BsiSI | CCGG | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 42 |
| BspMI | ACCTGC | 1 cut(s) | 164 |
| BssMI | GATC | 1 cut(s) | 42 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 192 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstF5I | GGATG | 1 cut(s) | 180 |
| BstKTI | GATC | 1 cut(s) | 45 |
| BstMBI | GATC | 1 cut(s) | 42 |
| BstSCI | CCNGG | 1 cut(s) | 122 |
| BtsCI | GGATG | 1 cut(s) | 180 |
| BtsIMutI | CAGTG | 2 cut(s) | 54, 188 |
| BveI | ACCTGC | 1 cut(s) | 164 |
| CviJI | RGCY | 1 cut(s) | 122 |
| CviKI_1 | RGCY | 1 cut(s) | 122 |
| DpnI | GATC | 1 cut(s) | 44 |
| DpnII | GATC | 1 cut(s) | 42 |
| DraI | TTTAAA | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| FokI | GGATG | 1 cut(s) | 167 |
| HapII | CCGG | 1 cut(s) | 123 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| HpaII | CCGG | 1 cut(s) | 123 |
| HphI | GGTGA | 1 cut(s) | 188 |
| Hpy188I | TCNGA | 1 cut(s) | 64 |
| Hpy188III | TCNNGA | 1 cut(s) | 14 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 192 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 69 |
| HpyCH4V | TGCA | 2 cut(s) | 52, 155 |
| HpySE526I | ACGT | 2 cut(s) | 18, 69 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Kzo9I | GATC | 1 cut(s) | 42 |
| LpnPI | CCDG | 3 cut(s) | 27, 136, 159 |
| MaeII | ACGT | 2 cut(s) | 18, 69 |
| MaeIII | GTNAC | 2 cut(s) | 147, 176 |
| MalI | GATC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 42 |
| MseI | TTAA | 2 cut(s) | 110, 131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| MspI | CCGG | 1 cut(s) | 123 |
| MspR9I | CCNGG | 1 cut(s) | 124 |
| NciI | CCSGG | 1 cut(s) | 124 |
| NdeII | GATC | 1 cut(s) | 42 |
| NmuCI | GTSAC | 2 cut(s) | 147, 176 |
| PaqCI | CACCTGC | 1 cut(s) | 164 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 2 cut(s) | 110, 131 |
| Sau3AI | GATC | 1 cut(s) | 42 |
| ScrFI | CCNGG | 1 cut(s) | 124 |
| SetI | ASST | 3 cut(s) | 21, 72, 178 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| StyD4I | CCNGG | 1 cut(s) | 122 |
| TaaI | ACNGT | 2 cut(s) | 49, 192 |
| TaiI | ACGT | 2 cut(s) | 21, 72 |
| TaqI | TCGA | 1 cut(s) | 169 |
| Tru1I | TTAA | 2 cut(s) | 110, 131 |
| Tru9I | TTAA | 2 cut(s) | 110, 131 |
| TscAI | CASTG | 2 cut(s) | 54, 195 |
| TseFI | GTSAC | 2 cut(s) | 147, 176 |
| Tsp45I | GTSAC | 2 cut(s) | 147, 176 |
| TspRI | CASTG | 2 cut(s) | 54, 195 |
| ZraI | GACGTC | 1 cut(s) | 19 |