Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005657.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

10957 .. 12546

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005657.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgccaaacccagatctctcagtctccttcatctctcacccgtttcctcttcttctcttcatccttgctcgatgccatcccatcagtgtaaaggcagccaataatccggtcattagatctgaggaagaaccactagagcgaagaagaagagagccagacctacacaaaccgcttctttccgtcctctctcaggcattacttgagtttgaaaagcatagatggcatggcagtgagcttgctcttcctgaaccttctagagatgagattcgggctgatggtagtcaaacttgtggatcaggcaggacactaagggatgctgcagcagtgcagctcgtgccatgcagggttggcactctcaatgcctttcctgaggaacctgagcccaagcggcagaagcttgatgactccatgcttattgcagaagataaatttctggcacagcatccagggcctgttcgtatcaccgtatctgttcctaatgttgatgaaggcaatctcaaaggacaacttttggagatcacagttcagtctttatctgaaattgttggaagtctgaaagagaaaatttctggggagatccagcttccggcaaacaaacagaaattgagtggaaaacctggctttctcaaggacaatttgtctcttgcatattacaatgttggagcaggagaaacacttgctctttcattgagagaacgtggtggtagaaagcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

238

Amino Acids

26.31

Weight (kDa)

7.76

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	170, 388, 712
AclWI	GGATC	2 cut(s)	301, 571
AcsI	RAATTY	2 cut(s)	428, 564
AfiI	CCNNNNNNNGG	2 cut(s)	190, 586
AgsI	TTSAA	1 cut(s)	209
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	445, 616
AluBI	AGCT	4 cut(s)	235, 331, 397, 583
AluI	AGCT	4 cut(s)	235, 331, 397, 583
Alw26I	GTCTC	2 cut(s)	28, 645
AlwI	GGATC	2 cut(s)	301, 571
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	95, 317, 320, 328
ApoI	RAATTY	2 cut(s)	428, 564
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	29, 454
AxyI	CCTNAGG	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	107, 304, 332, 340
BccI	CCATC	4 cut(s)	84, 89, 213, 269
BciT130I	CCWGG	2 cut(s)	447, 618
BcoDI	GTCTC	2 cut(s)	28, 645
BfaI	CTAG	2 cut(s)	134, 255
BfmI	CTRYAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	388
BglII	AGATCT	2 cut(s)	13, 116
BisI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
BlsI	GCNGC	5 cut(s)	97, 319, 322, 330, 390
Bme1390I	CCNGG	2 cut(s)	447, 618
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	447, 618
BmsI	GCATC	3 cut(s)	62, 304, 451
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	221, 611
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 586
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	447, 618
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	4 cut(s)	60, 76, 319, 442
BseLI	CCNNNNNNNGG	2 cut(s)	190, 586
BseMII	CTCAG	5 cut(s)	33, 111, 203, 360, 369
BseXI	GCAGC	4 cut(s)	107, 304, 332, 340
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	107, 587
BslI	CCNNNNNNNGG	2 cut(s)	190, 586
BsmAI	GTCTC	2 cut(s)	28, 645
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	13, 116, 293, 516, 576
BspACI	CCGC	3 cut(s)	170, 388, 712
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	5 cut(s)	32, 112, 202, 361, 370
BspLI	GGNNCC	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	301, 571
BspQI	GCTCTTC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	5 cut(s)	13, 116, 293, 516, 576
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	447, 618
Bst4CI	ACNGT	2 cut(s)	466, 523
Bst6I	CTCTTC	4 cut(s)	54, 62, 142, 246
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	60, 76, 319, 442
BstKTI	GATC	5 cut(s)	16, 119, 296, 519, 579
BstMAI	GTCTC	2 cut(s)	28, 645
BstMBI	GATC	5 cut(s)	13, 116, 293, 516, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
BstNI	CCWGG	2 cut(s)	447, 618
BstSCI	CCNGG	2 cut(s)	445, 616
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	107, 304, 332, 340
BstX2I	RGATCY	3 cut(s)	13, 116, 576
BstYI	RGATCY	3 cut(s)	13, 116, 576
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	4 cut(s)	60, 76, 319, 442
BtsI	GCAGTG	2 cut(s)	235, 330
BtsIMutI	CAGTG	3 cut(s)	91, 235, 330
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	449
CviAII	CATG	3 cut(s)	224, 339, 409
DdeI	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
DpnI	GATC	5 cut(s)	15, 118, 295, 518, 578
DpnII	GATC	5 cut(s)	13, 116, 293, 516, 576
DriI	GACNNNNNGTC	1 cut(s)	637
Eam1104I	CTCTTC	4 cut(s)	54, 62, 142, 246
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	4 cut(s)	54, 62, 142, 246
Eco24I	GRGCYC	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	445, 616
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	3 cut(s)	227, 342, 412
FaiI	YATR	5 cut(s)	216, 225, 340, 410, 649
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	3 cut(s)	223, 338, 408
Fnu4HI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
FokI	GGATG	4 cut(s)	47, 63, 326, 429
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
FspBI	CTAG	2 cut(s)	134, 255
GluI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	107, 587
Hin1II	CATG	3 cut(s)	227, 342, 412
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	265, 404
HpaII	CCGG	2 cut(s)	107, 587
HphI	GGTGA	2 cut(s)	29, 454
Hpy188I	TCNGA	3 cut(s)	121, 538, 555
Hpy188III	TCNNGA	3 cut(s)	245, 255, 368
HpyAV	CCTTC	3 cut(s)	37, 261, 482
HpyCH4III	ACNGT	2 cut(s)	466, 523
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	5 cut(s)	320, 328, 342, 419, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
HpyF3I	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	3 cut(s)	227, 342, 412
Kzo9I	GATC	5 cut(s)	13, 116, 293, 516, 576
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	4 cut(s)	107, 304, 332, 340
LweI	GCATC	3 cut(s)	62, 304, 451
MaeI	CTAG	2 cut(s)	134, 255
MaeII	ACGT	1 cut(s)	697
MalI	GATC	5 cut(s)	15, 118, 295, 518, 578
MboI	GATC	5 cut(s)	13, 116, 293, 516, 576
MboII	GAAGA	9 cut(s)	41, 44, 49, 137, 153, 156, 159, 233, 434
MflI	RGATCY	3 cut(s)	13, 116, 576
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	5 cut(s)	428, 540, 564, 602, 634
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	526, 640
MnlI	CCTC	4 cut(s)	57, 115, 194, 364
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	107, 587
MspR9I	CCNGG	2 cut(s)	447, 618
MvaI	CCWGG	2 cut(s)	447, 618
MwoI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
NdeII	GATC	5 cut(s)	13, 116, 293, 516, 576
NlaIII	CATG	3 cut(s)	227, 342, 412
NlaIV	GGNNCC	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	97, 319, 322, 330, 390
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	445, 616
PspGI	CCWGG	2 cut(s)	445, 616
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	13, 116, 576
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
Sau3AI	GATC	5 cut(s)	13, 116, 293, 516, 576
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	447, 618
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	9 cut(s)	162, 237, 253, 333, 379, 399, 585, 619, 700
SfaNI	GCATC	3 cut(s)	62, 304, 451
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	200, 626
SmoI	CTYRAG	2 cut(s)	200, 626
Sse9I	AATT	5 cut(s)	428, 540, 564, 602, 634
SsiI	CCGC	3 cut(s)	170, 388, 712
SspMI	CTAG	2 cut(s)	134, 255
StyD4I	CCNGG	2 cut(s)	445, 616
TaaI	ACNGT	2 cut(s)	466, 523
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	428, 540, 564, 602, 634
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	265
TscAI	CASTG	3 cut(s)	91, 235, 330
TseI	GCWGC	4 cut(s)	95, 317, 320, 328
TspDTI	ATGAA	4 cut(s)	19, 49, 501, 675
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	91, 235, 330
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	428, 564
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	2 cut(s)	134, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.