Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005903.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

19499 .. 20494

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005903.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgatgataggttccatcttacccttaccagctcctcctgcaaaatcagttgccacgcataccaaggctattggtatcatacctcctcctccaggaatcaaagtcgtcattgataaaactgctcagttcgtggcaaagaacggaccccaatttgaacaggtcatagctaagaatctagacatagcaaaatcaaatctaagctttttgatttcctcaaatccctacaatgcatattataagcgccgggtgtttgaattccttgcccagcctgatcagtcttatgaagagccagctccagttgtagatgttgaagttggagcaccaaaacctgattctccctcccagcttagacctgaatgcaaagtgcctgaaccatcagaacccgaagagtttactgttcggcttcctgaaggaatttgtggagaagaactagatgttattaaactcacagcccagtttgtagctcggaataggaaatcgtttttgacaggattgagaagcagagagataaacaaccccctgttctattttctcaagcctaatcatagcatgttcaactttttcacttctctggcagatgcatattcaaaggtgttgatgccaccagaaggattgacagggaagctcaagaagagcgtggcagacatgtctactgtgctagaacggtgtgtgcatcggctggagtgggaggcttatcaaaagaaggcaaaccagaaggccgaagatgagattgagcaggaaaggttacaaatggctgcaattgattggcacgataatgtcttggtcgaagtcatagactttgatgatgttgaggatgactgtttacctcctccactgagcatcaaagaggttataaggggaagcaaagttgttatggaagcagatgataatgtcgaaatggatatggatgaagaagagatgcagcttgttgaagatggaaagagggtaacaaaggtggatccagaacaaccaccaatgagaattgtgaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

331

Amino Acids

37.26

Weight (kDa)

4.89

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 854
AccI	GTMKAC	1 cut(s)	650
AclWI	GGATC	2 cut(s)	953, 966
AcsI	RAATTY	2 cut(s)	254, 414
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	92, 608
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	6 cut(s)	155, 254, 311, 556, 588, 932
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
AluBI	AGCT	8 cut(s)	32, 167, 201, 293, 346, 464, 625, 925
AluI	AGCT	8 cut(s)	32, 167, 201, 293, 346, 464, 625, 925
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	953, 966
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	755, 922
ApoI	RAATTY	2 cut(s)	254, 414
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	742, 934
BccI	CCATC	3 cut(s)	23, 382, 929
BciT130I	CCWGG	1 cut(s)	93
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	4 cut(s)	176, 431, 659, 994
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	2 cut(s)	756, 923
BlsI	GCNGC	2 cut(s)	757, 924
Bme1390I	CCNGG	2 cut(s)	93, 245
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	3 cut(s)	13, 145, 960
BmrFI	CCNGG	2 cut(s)	93, 245
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	5 cut(s)	568, 588, 682, 849, 909
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	3 cut(s)	75, 279, 701
BpuEI	CTTGAG	2 cut(s)	518, 611
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 608
Bse1I	ACTGG	2 cut(s)	296, 454
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	820, 913
BseLI	CCNNNNNNNGG	2 cut(s)	92, 608
BseMII	CTCAG	2 cut(s)	137, 827
BseNI	ACTGG	2 cut(s)	296, 454
BseRI	GAGGAG	4 cut(s)	24, 75, 78, 819
BseXI	GCAGC	2 cut(s)	742, 934
BseYI	CCCAGC	2 cut(s)	264, 342
BshFI	GGCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	92, 608
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	271, 958
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	136, 828
BspLI	GGNNCC	3 cut(s)	13, 145, 960
BspPI	GGATC	2 cut(s)	953, 966
BspQI	GCTCTTC	2 cut(s)	279, 626
BsrI	ACTGG	2 cut(s)	296, 454
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	271, 958
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	4 cut(s)	397, 655, 666, 821
Bst6I	CTCTTC	4 cut(s)	279, 381, 626, 909
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	123, 168, 197, 347, 836
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	820, 913
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	274, 961
BstMBI	GATC	2 cut(s)	271, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	2 cut(s)	553, 649
BstSCI	CCNGG	2 cut(s)	91, 243
BstV1I	GCAGC	2 cut(s)	742, 934
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	820, 913
BtsIMutI	CAGTG	1 cut(s)	833
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	2 cut(s)	550, 646
DdeI	CTNAG	5 cut(s)	123, 168, 197, 347, 836
DpnI	GATC	2 cut(s)	273, 960
DpnII	GATC	2 cut(s)	271, 958
Eam1104I	CTCTTC	4 cut(s)	279, 381, 626, 909
EarI	CTCTTC	4 cut(s)	279, 381, 626, 909
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	2 cut(s)	232, 583
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	553, 649
FatI	CATG	2 cut(s)	549, 645
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	2 cut(s)	756, 923
FokI	GGATG	2 cut(s)	827, 920
Fsp4HI	GCNGC	2 cut(s)	756, 923
FspBI	CTAG	4 cut(s)	176, 431, 659, 994
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	756, 923
GsaI	CCCAGC	2 cut(s)	268, 346
GsuI	CTGGAG	3 cut(s)	75, 279, 701
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	553, 649
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	3 cut(s)	96, 172, 332
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	393, 651, 824
Hpy188I	TCNGA	2 cut(s)	379, 468
Hpy188III	TCNNGA	4 cut(s)	176, 407, 628, 962
Hpy8I	GTNNAC	3 cut(s)	393, 651, 824
HpyAV	CCTTC	4 cut(s)	404, 602, 697, 709
HpyCH4III	ACNGT	4 cut(s)	397, 655, 666, 821
HpyCH4V	TGCA	7 cut(s)	41, 230, 360, 581, 673, 758, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	5 cut(s)	123, 168, 197, 347, 836
Hsp92II	CATG	2 cut(s)	553, 649
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	271, 958
LguI	GCTCTTC	2 cut(s)	279, 626
LmnI	GCTCC	3 cut(s)	37, 298, 317
Lsp1109I	GCAGC	2 cut(s)	742, 934
LweI	GCATC	5 cut(s)	568, 588, 682, 849, 909
MaeI	CTAG	4 cut(s)	176, 431, 659, 994
MaeIII	GTNAC	2 cut(s)	744, 946
MalI	GATC	2 cut(s)	273, 960
MboI	GATC	2 cut(s)	271, 958
MboII	GAAGA	8 cut(s)	296, 398, 437, 643, 734, 923, 926, 944
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	5 cut(s)	149, 254, 414, 759, 981
MmeI	TCCRAC	1 cut(s)	295
Mph1103I	ATGCAT	2 cut(s)	232, 583
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	93, 245
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	271, 958
NlaIII	CATG	2 cut(s)	553, 649
NlaIV	GGNNCC	3 cut(s)	13, 145, 960
NsiI	ATGCAT	2 cut(s)	232, 583
NspI	RCATGY	2 cut(s)	553, 649
PciI	ACATGT	1 cut(s)	645
PciSI	GCTCTTC	2 cut(s)	279, 626
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	96, 172, 332
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	757, 924
PscI	ACATGT	1 cut(s)	645
PsiI	TTATAA	2 cut(s)	237, 854
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	264, 342
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	13, 145, 960
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	958
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	2 cut(s)	279, 626
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	756, 923
Sau3AI	GATC	2 cut(s)	271, 958
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	93, 245
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	5 cut(s)	568, 588, 682, 849, 909
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	533, 626
SmoI	CTYRAG	2 cut(s)	533, 626
Sse9I	AATT	5 cut(s)	149, 254, 414, 759, 981
SspMI	CTAG	4 cut(s)	176, 431, 659, 994
StyD4I	CCNGG	2 cut(s)	91, 243
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	4 cut(s)	397, 655, 666, 821
TaqI	TCGA	2 cut(s)	786, 894
TasI	AATT	5 cut(s)	149, 254, 414, 759, 981
TfiI	GAWTC	3 cut(s)	96, 172, 332
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	840
TseI	GCWGC	2 cut(s)	755, 922
TspDTI	ATGAA	2 cut(s)	297, 924
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	840
VpaK11BI	GGWCC	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	2 cut(s)	254, 414
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	2 cut(s)	553, 649
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	4 cut(s)	176, 431, 659, 994
Zsp2I	ATGCAT	2 cut(s)	232, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.