Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

46013767 .. 46018087

Gene Structure 4321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTGCACAGGACTTGTACTACTATCTCTTGGACTTTTCGGATTTTCTACGAGAAGGCATTACTTGAGTTTGAAAAGCATAGATGGCATGGCAGTGAGCTTGCTCTTCCTGAACCTTCTAGAGTTGAGATTCGGGCTGATGGTAGTCAAACTTGTGGATCAGGCAGGACACTAAGGGATGCTGCAGCAGTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCAATGCCTTTCCTGGTAATCCTTTTTTCTTTTGCTTAGTTTATGTTGGCCATTTTTTTTTCTATGGGAAGATTGGGCTATGGTCTGTGCGACAAGTTAGATGTGTGCTCTTCATGCATCTAAACCAGCCTGGACTGGGACCACTGGTATTGGTCTTCTCTTTTTTGAAAATTGGTTTCTCTACACAGGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HSP20

Protein Analysis

138

Amino Acids

15.69

Weight (kDa)

9.27

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	268
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	74, 388
AjnI	CCWGG	2 cut(s)	232, 349
AluBI	AGCT	2 cut(s)	100, 196
AluI	AGCT	2 cut(s)	100, 196
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	4, 182, 185, 193
AspS9I	GGNCC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	270
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	169, 197, 205
BccI	CCATC	2 cut(s)	78, 134
BciT130I	CCWGG	2 cut(s)	234, 351
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	5, 183, 186, 194
BlsI	GCNGC	4 cut(s)	6, 184, 187, 195
Bme1390I	CCNGG	2 cut(s)	234, 351
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	234, 351
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	169, 346
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	360, 369
BseBI	CCWGG	2 cut(s)	234, 351
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	360, 369
BseXI	GCAGC	3 cut(s)	169, 197, 205
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	166
BspQI	GCTCTTC	2 cut(s)	111, 335
BsrI	ACTGG	2 cut(s)	360, 369
BssMI	GATC	1 cut(s)	158
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	234, 351
Bst6I	CTCTTC	2 cut(s)	111, 335
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	173, 256
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 199, 213, 334
BstNI	CCWGG	2 cut(s)	234, 351
BstSCI	CCNGG	2 cut(s)	232, 349
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	169, 197, 205
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	2 cut(s)	100, 195
BtsIMutI	CAGTG	3 cut(s)	100, 195, 362
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	89, 204, 334
CviJI	RGCY	6 cut(s)	100, 137, 196, 270, 298, 349
CviKI_1	RGCY	6 cut(s)	100, 137, 196, 270, 298, 349
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	2 cut(s)	173, 256
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	111, 335
EarI	CTCTTC	2 cut(s)	111, 335
Eco47I	GGWCC	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	232, 349
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	3 cut(s)	92, 207, 337
FaiI	YATR	7 cut(s)	81, 90, 205, 264, 285, 301, 335
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	88, 203, 333
Fnu4HI	GCNGC	4 cut(s)	5, 183, 186, 194
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	5, 183, 186, 194
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	4 cut(s)	5, 183, 186, 194
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	92, 207, 337
HinfI	GANTC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	110, 120
HpyAV	CCTTC	2 cut(s)	49, 126
HpyCH4V	TGCA	5 cut(s)	7, 185, 193, 207, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 199, 213, 334
HpyF3I	CTNAG	2 cut(s)	173, 256
Hsp92II	CATG	3 cut(s)	92, 207, 337
Kzo9I	GATC	1 cut(s)	158
LguI	GCTCTTC	2 cut(s)	111, 335
Lsp1109I	GCAGC	3 cut(s)	169, 197, 205
LweI	GCATC	2 cut(s)	169, 346
MaeI	CTAG	1 cut(s)	120
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	4 cut(s)	98, 301, 322, 367
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	234, 351
MvaI	CCWGG	2 cut(s)	234, 351
MwoI	GCNNNNNNNGC	4 cut(s)	85, 199, 213, 334
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	92, 207, 337
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	339
PciSI	GCTCTTC	2 cut(s)	111, 335
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	6, 184, 187, 195
Psp6I	CCWGG	2 cut(s)	232, 349
PspGI	CCWGG	2 cut(s)	232, 349
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	2 cut(s)	111, 335
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	4 cut(s)	5, 183, 186, 194
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	234, 351
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	102, 118, 198, 411
SfaNI	GCATC	2 cut(s)	169, 346
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	390
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	232, 349
TasI	AATT	1 cut(s)	390
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	3 cut(s)	100, 195, 369
TseI	GCWGC	4 cut(s)	4, 182, 185, 193
TspDTI	ATGAA	1 cut(s)	322
TspRI	CASTG	3 cut(s)	100, 195, 369
VpaK11BI	GGWCC	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	119
XspI	CTAG	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.