Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

40820143 .. 40820628

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1329400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTCGACGCAATAAATGATAGGGTTGAGAGAATTAAGAGCTTAGGACGTTTTGGGCTTACTTATTTCTTATACAAAGGGGTCAAGTCCCCTTATAAGCAGTCGGATCCACGAGAAAAAAAATTACATTACAACTATATGGTTGTGAAGTGCTCATGTAATTCACATCAAATATATATGCTTATTCAGGAAGATCAGTTTCTGGCACAGCATCGGGGACCTGTTTCCATCAGAGTTTCTGTCCCCAGTGCCAATGAAGGTAATCTGAAGGGGAAATTTTTGGAGATTACAGTGCAGTCTTTGTCTGAATCTGTGGTTAAACTGAAAGAAAAAATTTCCACGGAGATTCAGCTTCCTGCAAATAAACGGAAACTGAGTGGAAAACCCGGCTTTCTCAAGGACAATTTGTCGCTTGCTTACTACAATGTTGGAGCTGGAGAAACACTTACCCTTTCAGTACGAGAGCGTGGTGGAAGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

162

Amino Acids

18.31

Weight (kDa)

9.84

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	100 - 156	7.8e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	2 cut(s)	275, 333
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	459
AhdI	GACNNNNNGTC	1 cut(s)	406
AluBI	AGCT	3 cut(s)	42, 352, 434
AluI	AGCT	3 cut(s)	42, 352, 434
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	101, 114
AlwNI	CAGNNNCTG	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	275, 333
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	155
BccI	CCATC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	218
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	108, 219
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	3 cut(s)	73, 227, 231
BsmFI	GGGAC	3 cut(s)	73, 227, 231
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	106, 193
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	108, 219
BspPI	GGATC	2 cut(s)	101, 114
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	106, 193
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	43, 374
BstDSI	CCRYGG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	109, 196
BstMBI	GATC	2 cut(s)	106, 193
BstSCI	CCNGG	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	253, 297
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	5 cut(s)	42, 58, 352, 390, 434
CviKI_1	RGCY	5 cut(s)	42, 58, 352, 390, 434
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	43, 374
DpnI	GATC	2 cut(s)	108, 195
DpnII	GATC	2 cut(s)	106, 193
DriI	GACNNNNNGTC	1 cut(s)	406
Eam1105I	GACNNNNNGTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	218
FaeI	CATG	1 cut(s)	159
FaiI	YATR	8 cut(s)	73, 96, 138, 140, 157, 175, 177, 179
FaqI	GGGAC	3 cut(s)	73, 227, 231
FatI	CATG	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	456
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	2 cut(s)	308, 346
HpaII	CCGG	1 cut(s)	387
Hpy188I	TCNGA	4 cut(s)	106, 233, 267, 307
Hpy188III	TCNNGA	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	251, 262
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	295, 359
HpyF3I	CTNAG	2 cut(s)	43, 374
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	106, 193
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	7 cut(s)	173, 188, 234, 259, 369, 400, 420
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	49
MalI	GATC	2 cut(s)	108, 195
MboI	GATC	2 cut(s)	106, 193
MboII	GAAGA	2 cut(s)	203, 486
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	6 cut(s)	33, 122, 160, 275, 333, 403
MmeI	TCCRAC	2 cut(s)	84, 409
MnlI	CCTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	36, 318
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	387
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	106, 193
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	2 cut(s)	108, 219
PfeI	GAWTC	2 cut(s)	308, 346
PpuMI	RGGWCCY	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	108, 219
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	36, 318
Sau3AI	GATC	2 cut(s)	106, 193
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	44, 52, 223, 262, 354, 436, 485
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	6 cut(s)	33, 122, 160, 275, 333, 403
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	6
TasI	AATT	6 cut(s)	33, 122, 160, 275, 333, 403
TfiI	GAWTC	2 cut(s)	308, 346
Tru1I	TTAA	2 cut(s)	36, 318
Tru9I	TTAA	2 cut(s)	36, 318
TscAI	CASTG	2 cut(s)	253, 297
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	356, 382
TspRI	CASTG	2 cut(s)	253, 297
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	275, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.