Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

31719585 .. 31720375

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACGAAATCTCAAGGAACATTTGCAAGATCCCGTCCTGATATTTTTGGTACCACAGAAGAAGAGGTTTCTAATGTTATCAAGGCTAAGATCGAAAAAACGAAAGATGAGCAAGAAAAGCAGGTTATATGGGATGGTCACACTGGAAGCATTGGCTTTAATCAAAACTATGTTCCTAAAAACGGTGCAAGGAACCTTCCTGGTCAGCAGCTCCTCCTCCAAAGTTGGTTGTTCCCGTATTTTACACCTATGCAAGTTCCTCGTGCCTATATTCCTCTTCATGCTCCGTTACCTACGATGCAATCGATGCCACCACTGCCTTTGCCTCAGGTTATCCCACCCCCTGAGAAAGCCCGTCCACGACGTCCGGAAGAAGAGCCTGAGCCAAAGCGGCAGAAGCTTGACGATTATATAGTAGCTGTCCCCAATGCCAATGAAGGTAATCTGAAGGGGCGATTTTTGGAGATTATAGTGCAGTCATTGTCTGAATCTGTTGTTAAGCTGAAAGAACAAATTTCTGCGGAGATTCAGCTTCCTGCAAATAAACAGAAACTCAGTGGAAAACCCGGCTTTCTCAAAGACAATCTGTCGCTTGCTTACTACAATGTTGGAGCTGGAGAAACAATTACCCTTTCAGTACGAGAGCATGGCAGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

9.52

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	391, 521
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	2 cut(s)	52, 639
AfiI	CCNNNNNNNGG	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	6 cut(s)	211, 400, 419, 502, 532, 614
AluI	AGCT	6 cut(s)	211, 400, 419, 502, 532, 614
AlwI	GGATC	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	567
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	209, 392
BlsI	GCNGC	2 cut(s)	210, 393
Bme1390I	CCNGG	2 cut(s)	201, 567
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmiI	GGNNCC	2 cut(s)	52, 194
BmrFI	CCNGG	2 cut(s)	201, 567
BmsI	GCATC	2 cut(s)	288, 297
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	305
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	336, 341, 372, 568
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	203, 206
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	368, 567
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	407
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	29, 90
BspACI	CCGC	2 cut(s)	391, 521
BspCNI	CTCAG	4 cut(s)	337, 340, 373, 567
BspDI	ATCGAT	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	52, 194
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	29, 90
BssNI	GRCGYC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	3 cut(s)	57, 282, 369
BstACI	GRCGYC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	5 cut(s)	87, 327, 345, 381, 554
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	32, 93
BstMBI	GATC	2 cut(s)	29, 90
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	199, 565
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	3 cut(s)	141, 314, 562
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	594
ClaI	ATCGAT	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	51, 638
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	2 cut(s)	281, 647
CviQI	GTAC	2 cut(s)	51, 638
DdeI	CTNAG	5 cut(s)	87, 327, 345, 381, 554
DpnI	GATC	2 cut(s)	31, 92
DpnII	GATC	2 cut(s)	29, 90
DriI	GACNNNNNGTC	1 cut(s)	586
Eam1104I	CTCTTC	3 cut(s)	57, 282, 369
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	3 cut(s)	57, 282, 369
Eco57I	CTGAAG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	284, 650
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	280, 646
Fnu4HI	GCNGC	2 cut(s)	209, 392
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	209, 392
GluI	GCNGC	2 cut(s)	209, 392
GsuI	CTGGAG	1 cut(s)	636
HapII	CCGG	2 cut(s)	368, 567
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	284, 650
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	488, 526
HpaII	CCGG	2 cut(s)	368, 567
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	447, 487
Hpy188III	TCNNGA	2 cut(s)	38, 368
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	206, 431, 442
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	6 cut(s)	26, 188, 253, 301, 475, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
HpyF3I	CTNAG	5 cut(s)	87, 327, 345, 381, 554
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	284, 650
Kpn2I	TCCGGA	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	29, 90
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	216, 289, 611
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	288, 297
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	137, 288
MalI	GATC	2 cut(s)	31, 92
MboI	GATC	2 cut(s)	29, 90
MboII	GAAGA	6 cut(s)	71, 74, 269, 383, 386, 666
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	2 cut(s)	513, 624
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	6 cut(s)	58, 224, 227, 270, 285, 336
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	2 cut(s)	159, 498
MspI	CCGG	2 cut(s)	368, 567
MspR9I	CCNGG	2 cut(s)	201, 567
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	29, 90
NlaIII	CATG	2 cut(s)	284, 650
NlaIV	GGNNCC	2 cut(s)	52, 194
NmuCI	GTSAC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	488, 526
PkrI	GCNGC	2 cut(s)	210, 393
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	52, 194
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	52, 639
RsaNI	GTAC	2 cut(s)	51, 638
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	159, 498
SatI	GCNGC	2 cut(s)	209, 392
Sau3AI	GATC	2 cut(s)	29, 90
ScrFI	CCNGG	2 cut(s)	201, 567
SfaNI	GCATC	2 cut(s)	288, 297
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	513, 624
SsiI	CCGC	2 cut(s)	391, 521
StyD4I	CCNGG	2 cut(s)	199, 565
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	93, 305
TasI	AATT	2 cut(s)	513, 624
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	488, 526
Tru1I	TTAA	2 cut(s)	159, 498
Tru9I	TTAA	2 cut(s)	159, 498
TscAI	CASTG	3 cut(s)	148, 321, 562
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	269, 450
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	3 cut(s)	148, 321, 562
XapI	RAATTY	1 cut(s)	513
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.