Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005151.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Reverse (-)

340 .. 1419

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005151.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgaataatggttttgggatatgtgagttgaagccccctctatataaaggaaggttttccccacgtaattctcagaccgtgatgatgatgataggttccatcttacccttaccagctcctcctgcaaaatcagttgccacgcataccaaggctattggtatcatacctcctcctccaggaatcaaagtcgtcattgataaaactgctaagttcgtggcaaagaacggaccccaatttgaacaggtcatagctaagaatctagacatagcaaaatcaaatctaagctttttgatttcctcaaatccctacaatgcatattataagctccgggtgtctgaattccttgcccagcctgatcagtcttatgaaaagccagcgagagttgtagatgttgaagctggagcaccaaaacctgattctccctcccagcttagacctgaatgcaaagtgcctgaaccatcagaacccgaagagtttactgttcggcttcctgaaggaatttgtggagaagaactagatgttattaaactcacagcccagtttgtagctcggaatgggaaatcgtttttgacaggattgagaagcagagagataaacaaccccctgttctattttctcaagcctaatcatagcatgttcaactttttcacttctctggcagatgcatattcaaaggtgttgatgccaccagaaggattgacagggaagctcaagaagagtgtggcagacatgtctactgtgctagaacggtgtgtgcatcggctggagtgggaggcttatcaaaagaaggcaaagcagaaggccgaagatgagattgagcaggaaagattacaaatggctgcaattgattggcacgataatgtcttggtcgaagtcatagactttgatgatgttgaggatgactgtttacctcctccactgagcatcaaagaggttataaggggaagcaaagttgttatggaagcagatgataatgtcgaaatggatatggatgaagaagagatgcagcttgttgaagatggaaagagggtaacaaaggtggatccagaacaaccaccaatgagaattgtgaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

359

Amino Acids

40.27

Weight (kDa)

5.25

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	321, 938
AccI	GTMKAC	1 cut(s)	734
AclWI	GGATC	2 cut(s)	1037, 1050
AcsI	RAATTY	2 cut(s)	338, 498
AcuI	CTGAAG	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	176, 692
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	6 cut(s)	31, 239, 395, 640, 672, 1016
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AluBI	AGCT	9 cut(s)	116, 251, 285, 325, 398, 430, 548, 709, 1009
AluI	AGCT	9 cut(s)	116, 251, 285, 325, 398, 430, 548, 709, 1009
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	1037, 1050
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	2 cut(s)	839, 1006
ApoI	RAATTY	2 cut(s)	338, 498
Asp700I	GAANNNNTTC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	1042
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	826, 1018
BccI	CCATC	3 cut(s)	107, 466, 1013
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	4 cut(s)	260, 515, 743, 1078
BisI	GCNGC	2 cut(s)	840, 1007
BlsI	GCNGC	2 cut(s)	841, 1008
Bme1390I	CCNGG	2 cut(s)	177, 329
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	97, 229, 1044
BmrFI	CCNGG	2 cut(s)	177, 329
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	5 cut(s)	652, 672, 766, 933, 993
BmuI	ACTGGG	1 cut(s)	532
BpmI	CTGGAG	3 cut(s)	159, 420, 785
BpuEI	CTTGAG	2 cut(s)	602, 695
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 692
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	904, 997
BseLI	CCNNNNNNNGG	2 cut(s)	176, 692
BseMII	CTCAG	2 cut(s)	86, 911
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	4 cut(s)	108, 159, 162, 903
BseXI	GCAGC	2 cut(s)	826, 1018
BseYI	CCCAGC	2 cut(s)	348, 426
BshFI	GGCC	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	176, 692
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	355, 1042
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	2 cut(s)	85, 912
BspLI	GGNNCC	3 cut(s)	97, 229, 1044
BspPI	GGATC	2 cut(s)	1037, 1050
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	355, 1042
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	5 cut(s)	79, 481, 739, 750, 905
Bst6I	CTCTTC	3 cut(s)	465, 710, 993
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	72, 207, 252, 281, 431, 920
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	904, 997
BstKTI	GATC	2 cut(s)	358, 1045
BstMBI	GATC	2 cut(s)	355, 1042
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	637, 733
BstSCI	CCNGG	2 cut(s)	175, 327
BstV1I	GCAGC	2 cut(s)	826, 1018
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	904, 997
BtsIMutI	CAGTG	1 cut(s)	917
Cac8I	GCNNGC	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	2 cut(s)	634, 730
DdeI	CTNAG	6 cut(s)	72, 207, 252, 281, 431, 920
DpnI	GATC	2 cut(s)	357, 1044
DpnII	GATC	2 cut(s)	355, 1042
Eam1104I	CTCTTC	3 cut(s)	465, 710, 993
EarI	CTCTTC	3 cut(s)	465, 710, 993
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	2 cut(s)	316, 667
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	637, 733
FatI	CATG	2 cut(s)	633, 729
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	2 cut(s)	840, 1007
FokI	GGATG	2 cut(s)	911, 1004
Fsp4HI	GCNGC	2 cut(s)	840, 1007
FspBI	CTAG	4 cut(s)	260, 515, 743, 1078
GluI	GCNGC	2 cut(s)	840, 1007
GsaI	CCCAGC	2 cut(s)	352, 430
GsuI	CTGGAG	3 cut(s)	159, 420, 785
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	2 cut(s)	637, 733
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	3 cut(s)	180, 256, 416
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	477, 735, 908
Hpy188I	TCNGA	4 cut(s)	75, 337, 463, 552
Hpy188III	TCNNGA	4 cut(s)	260, 491, 712, 1046
Hpy8I	GTNNAC	3 cut(s)	477, 735, 908
HpyAV	CCTTC	5 cut(s)	45, 488, 686, 781, 793
HpyCH4III	ACNGT	5 cut(s)	79, 481, 739, 750, 905
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	7 cut(s)	125, 314, 444, 665, 757, 842, 1006
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	6 cut(s)	72, 207, 252, 281, 431, 920
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	637, 733
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	355, 1042
LmnI	GCTCC	3 cut(s)	121, 330, 401
Lsp1109I	GCAGC	2 cut(s)	826, 1018
LweI	GCATC	5 cut(s)	652, 672, 766, 933, 993
MaeI	CTAG	4 cut(s)	260, 515, 743, 1078
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	2 cut(s)	357, 1044
MboI	GATC	2 cut(s)	355, 1042
MboII	GAAGA	7 cut(s)	482, 521, 727, 818, 1007, 1010, 1028
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	6 cut(s)	67, 233, 338, 498, 843, 1065
Mph1103I	ATGCAT	2 cut(s)	316, 667
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	858
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	177, 329
MunI	CAATTG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	355, 1042
NlaIII	CATG	2 cut(s)	637, 733
NlaIV	GGNNCC	3 cut(s)	97, 229, 1044
NsiI	ATGCAT	2 cut(s)	316, 667
NspI	RCATGY	2 cut(s)	637, 733
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	180, 256, 416
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	841, 1008
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	1 cut(s)	729
PsiI	TTATAA	2 cut(s)	321, 938
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	2 cut(s)	348, 426
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	97, 229, 1044
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	1042
RseI	CAYNNNNRTG	1 cut(s)	858
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	840, 1007
Sau3AI	GATC	2 cut(s)	355, 1042
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	177, 329
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	5 cut(s)	652, 672, 766, 933, 993
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	2 cut(s)	617, 710
SmoI	CTYRAG	2 cut(s)	617, 710
Sse9I	AATT	6 cut(s)	67, 233, 338, 498, 843, 1065
SspMI	CTAG	4 cut(s)	260, 515, 743, 1078
StyD4I	CCNGG	2 cut(s)	175, 327
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	5 cut(s)	79, 481, 739, 750, 905
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	870, 978
TasI	AATT	6 cut(s)	67, 233, 338, 498, 843, 1065
TfiI	GAWTC	3 cut(s)	180, 256, 416
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	924
TseI	GCWGC	2 cut(s)	839, 1006
TspDTI	ATGAA	3 cut(s)	17, 381, 1008
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	924
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	2 cut(s)	338, 498
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	637, 733
XmiI	GTMKAC	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	4 cut(s)	260, 515, 743, 1078
Zsp2I	ATGCAT	2 cut(s)	316, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.