Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

43473554 .. 43476561

Gene Structure 3008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGCATCACAACCTACTCGTCCTTGGTTTCGACTAAGCTCCATGGTGCGGCCAGCCACGACACCAACCCCAGCTCCTGCAGCAGCCCCGGCACCCACCCCCGCACCAACCCCTGCCCCTGCACCTGTGGTTCGACCTACATTGAGGCCGCTAGCTCCTCTTCCTCCTGCTGAACCCACTCCACCACCACCAGCGGTCCGAGCTCCAATTCCGCCCGCACCAGCAGCCCCAACTCCAACTCCACGGCCACTTGCTGTGGCACCTCCACCGGTTGCTACTGCTCCAGCAGCACCACCACCTCTGGCTGTGACTAGTTCAACTGCATCTGTTCCATCGTCCCCAGCTCGTGGCGTTAGTTCTGCTCCCTCAGCAGCATCCCCTCCTGCAACTGCAATTGCCATCACATCCGCTTCATCAGTACCATCATCTCCTGGAAAGGTAGCCCCATCCTCTACATCAGGGGTGCCATCTCCTAGAAGCAGGGTCACTACTTCAGTGTCCGACTATCCAGTTACCTCCAGAGCAGTACCTCCACCAAAACCCGTGGCCACTACAATTTCAGTGCCACGACAAACTTATTCTCCACCTAAACCCAGAAGCACAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCCAGTTACATTCCACCTCCCAGAACCCTTAAGCCGGTGAATAATACCCCACCTCAGTCGCCTAGCAGGCCCAAACCTACTGCCCCGCCACCCTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAAGGATTCCATTAGAGGCTGAGCAGAAGATGGTGCTGGTCCAAAAGACCATTGATCAAAAGCCGACTTCCTGGTTCAGTACTGGAGTCTCAAAGCAGGATCATGAGTCTACTCGTGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACCAAGAAGAAGTTATCATCTGATTCTGAGGAGGCTCCAGGCATGAGGGTTATAACTCTTACAGGTGATAACAAAGGGGCTTATATGGAACTCATTCAATCCCCTAATAAACATCATGAGCAACGTGGGGAGCATTCTCATTATCTTTTCAAGAAAGGCCACAATGGTAAGTCGGCACAGACAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGCAGCAGCAGCAGTGGCGAGGAAGGCAAGCCAAAAATGAAGGACAAAAGTCACCACAAAGGAATTAAGGCAGGGAGCTCATCACAGCTGCCTCTGAGTTCATTCACAAACAGCAATGTTCAAGGGATCAACAACTCCATTGTGTACAACAGTTCCTGCACTCACCACGACCCGGGCGTGCACCTTGCTCTCACTAGGAAGCCCAATGGGGATGGATTCGATGTCAAGAGCCATGTCAATGGCCGACACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

476

Amino Acids

49.84

Weight (kDa)

10.23

Isoelectric Point (pI)

73.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
AccB1I	GGYRCC	3 cut(s)	91, 259, 463
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	8 cut(s)	49, 102, 149, 194, 212, 216, 408, 725
AclWI	GGATC	2 cut(s)	897, 1310
AcoI	YGGCCR	4 cut(s)	50, 245, 546, 1417
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	5 cut(s)	420, 528, 622, 871, 1322
AfiI	CCNNNNNNNGG	4 cut(s)	48, 347, 673, 1348
AflII	CTTAAG	1 cut(s)	668
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	318, 1058, 1111, 1298
AhlI	ACTAGT	1 cut(s)	311
AjnI	CCWGG	4 cut(s)	430, 860, 919, 997
AluBI	AGCT	8 cut(s)	39, 74, 155, 203, 344, 1170, 1254, 1264
AluI	AGCT	8 cut(s)	39, 74, 155, 203, 344, 1170, 1254, 1264
Alw21I	GWGCWC	3 cut(s)	205, 1256, 1359
Alw26I	GTCTC	1 cut(s)	883
Alw44I	GTGCAC	1 cut(s)	1355
AlwI	GGATC	2 cut(s)	897, 1310
AlwNI	CAGNNNCTG	2 cut(s)	77, 1332
Ama87I	CYCGRG	2 cut(s)	627, 1348
AoxI	GGCC	8 cut(s)	50, 146, 245, 546, 707, 917, 1117, 1417
ApaLI	GTGCAC	1 cut(s)	1355
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspS9I	GGNCC	4 cut(s)	196, 708, 765, 829
AsuC2I	CCSGG	3 cut(s)	89, 1349, 1350
AsuHPI	GGTGA	5 cut(s)	688, 952, 1037, 1220, 1331
AsuNHI	GCTAGC	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	627, 1348
AvaII	GGWCC	3 cut(s)	196, 765, 829
BaeGI	GKGCMC	1 cut(s)	1359
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	3 cut(s)	91, 259, 463
BanII	GRGCYC	2 cut(s)	205, 1256
BauI	CACGAG	2 cut(s)	345, 903
Bbv12I	GWGCWC	3 cut(s)	205, 1256, 1359
BbvCI	CCTCAGC	1 cut(s)	367
BccI	CCATC	8 cut(s)	340, 407, 430, 454, 475, 760, 814, 1382
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	4 cut(s)	432, 862, 921, 999
BclI	TGATCA	2 cut(s)	787, 844
BcnI	CCSGG	3 cut(s)	89, 1349, 1350
BcoDI	GTCTC	1 cut(s)	883
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	6 cut(s)	152, 312, 474, 636, 702, 1371
BfmI	CTRYAG	3 cut(s)	78, 774, 1171
BfrI	CTTAAG	1 cut(s)	668
BglI	GCCNNNNNGGC	1 cut(s)	706
BlpI	GCTNAGC	1 cut(s)	810
BmcAI	AGTACT	2 cut(s)	622, 871
Bme1390I	CCNGG	7 cut(s)	89, 432, 862, 921, 999, 1349, 1350
Bme18I	GGWCC	3 cut(s)	196, 765, 829
BmeT110I	CYCGRG	2 cut(s)	627, 1348
BmgT120I	GGNCC	4 cut(s)	196, 708, 765, 829
BmiI	GGNNCC	5 cut(s)	93, 261, 465, 633, 996
BmrFI	CCNGG	7 cut(s)	89, 432, 862, 921, 999, 1349, 1350
BmrI	ACTGGG	2 cut(s)	612, 636
BmsI	GCATC	3 cut(s)	14, 332, 383
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	2 cut(s)	612, 636
BoxI	GACNNNNGTC	1 cut(s)	1224
BpmI	CTGGAG	4 cut(s)	267, 502, 894, 981
Bpu10I	CCTNAGC	1 cut(s)	367
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuMI	CCSGG	3 cut(s)	89, 1349, 1350
BsaJI	CCNNGG	6 cut(s)	23, 42, 87, 242, 543, 1348
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 223, 253, 565, 595
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 347, 673, 1348
Bse118I	RCCGGY	2 cut(s)	268, 673
Bse1I	ACTGG	4 cut(s)	509, 618, 642, 877
Bse3DI	GCAATG	1 cut(s)	1297
BseBI	CCWGG	4 cut(s)	432, 862, 921, 999
BseDI	CCNNGG	6 cut(s)	23, 42, 87, 242, 543, 1348
BseGI	GGATG	4 cut(s)	374, 404, 446, 1393
BseLI	CCNNNNNNNGG	4 cut(s)	48, 347, 673, 1348
BseMI	GCAATG	1 cut(s)	1297
BseMII	CTCAG	6 cut(s)	381, 707, 770, 801, 978, 1262
BseNI	ACTGG	4 cut(s)	509, 618, 642, 877
BseRI	GAGGAG	3 cut(s)	147, 726, 1004
BseSI	GKGCMC	1 cut(s)	1359
BseYI	CCCAGC	2 cut(s)	70, 340
BsgI	GTGCAG	2 cut(s)	105, 1318
BshFI	GGCC	8 cut(s)	52, 148, 247, 548, 709, 919, 1119, 1419
BshNI	GGYRCC	3 cut(s)	91, 259, 463
BshTI	ACCGGT	1 cut(s)	268
BsiHKAI	GWGCWC	3 cut(s)	205, 1256, 1359
BsiHKCI	CYCGRG	2 cut(s)	627, 1348
BsiSI	CCGG	4 cut(s)	89, 269, 674, 1349
BslFI	GGGAC	3 cut(s)	322, 624, 895
BslI	CCNNNNNNNGG	4 cut(s)	48, 347, 673, 1348
BsmAI	GTCTC	1 cut(s)	883
BsmFI	GGGAC	3 cut(s)	322, 624, 895
BsmI	GAATGC	1 cut(s)	1093
BsnI	GGCC	8 cut(s)	52, 148, 247, 548, 709, 919, 1119, 1419
BsoBI	CYCGRG	2 cut(s)	627, 1348
Bsp1286I	GDGCHC	3 cut(s)	205, 1256, 1359
Bsp1407I	TGTACA	1 cut(s)	1320
Bsp143I	GATC	5 cut(s)	778, 787, 844, 889, 1302
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	8 cut(s)	49, 102, 149, 194, 212, 216, 408, 725
BspANI	GGCC	8 cut(s)	52, 148, 247, 548, 709, 919, 1119, 1419
BspCNI	CTCAG	6 cut(s)	380, 706, 769, 802, 979, 1263
BspHI	TCATGA	3 cut(s)	892, 1075, 1153
BspLI	GGNNCC	5 cut(s)	93, 261, 465, 633, 996
BspMAI	CTGCAG	2 cut(s)	82, 778
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	897, 1310
BspT107I	GGYRCC	3 cut(s)	91, 259, 463
BspTI	CTTAAG	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	1297
BsrFI	RCCGGY	2 cut(s)	268, 673
BsrGI	TGTACA	1 cut(s)	1320
BsrI	ACTGG	4 cut(s)	509, 618, 642, 877
BssAI	RCCGGY	2 cut(s)	268, 673
BssECI	CCNNGG	6 cut(s)	23, 42, 87, 242, 543, 1348
BssMI	GATC	5 cut(s)	778, 787, 844, 889, 1302
BssSI	CACGAG	2 cut(s)	345, 903
BssT1I	CCWWGG	2 cut(s)	23, 42
Bst2BI	CACGAG	2 cut(s)	345, 903
Bst2UI	CCWGG	4 cut(s)	432, 862, 921, 999
Bst4CI	ACNGT	3 cut(s)	1144, 1328, 1427
Bst6I	CTCTTC	2 cut(s)	165, 945
BstAFI	CTTAAG	1 cut(s)	668
BstAUI	TGTACA	1 cut(s)	1320
BstC8I	GCNNGC	6 cut(s)	54, 153, 216, 707, 1205, 1355
BstDEI	CTNAG	7 cut(s)	35, 367, 693, 756, 810, 987, 1271
BstDSI	CCRYGG	3 cut(s)	42, 242, 543
BstF5I	GGATG	4 cut(s)	374, 404, 446, 1393
BstKTI	GATC	5 cut(s)	781, 790, 847, 892, 1305
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	5 cut(s)	778, 787, 844, 889, 1302
BstNI	CCWGG	4 cut(s)	432, 862, 921, 999
BstPAI	GACNNNNGTC	1 cut(s)	1224
BstSCI	CCNGG	7 cut(s)	87, 430, 860, 919, 997, 1347, 1348
BstSFI	CTRYAG	3 cut(s)	78, 774, 1171
BstSLI	GKGCMC	1 cut(s)	1359
BstXI	CCANNNNNNTGG	2 cut(s)	920, 1415
BsuRI	GGCC	8 cut(s)	52, 148, 247, 548, 709, 919, 1119, 1419
BtgI	CCRYGG	3 cut(s)	42, 242, 543
BtsCI	GGATG	4 cut(s)	374, 404, 446, 1393
BtsI	GCAGTG	2 cut(s)	771, 1195
BtsIMutI	CAGTG	4 cut(s)	501, 567, 771, 1195
Cac8I	GCNNGC	6 cut(s)	54, 153, 216, 707, 1205, 1355
CaiI	CAGNNNCTG	2 cut(s)	77, 1332
CciI	TCATGA	3 cut(s)	892, 1075, 1153
Cfr10I	RCCGGY	2 cut(s)	268, 673
Cfr13I	GGNCC	4 cut(s)	196, 708, 765, 829
Cfr9I	CCCGGG	1 cut(s)	1348
CpoI	CGGWCCG	1 cut(s)	196
Csp6I	GTAC	5 cut(s)	419, 527, 621, 870, 1321
CspAI	ACCGGT	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	8 cut(s)	43, 893, 929, 938, 1003, 1076, 1154, 1409
CviQI	GTAC	5 cut(s)	419, 527, 621, 870, 1321
DdeI	CTNAG	7 cut(s)	35, 367, 693, 756, 810, 987, 1271
DpnI	GATC	5 cut(s)	780, 789, 846, 891, 1304
DpnII	GATC	5 cut(s)	778, 787, 844, 889, 1302
EaeI	YGGCCR	4 cut(s)	50, 245, 546, 1417
Eam1104I	CTCTTC	2 cut(s)	165, 945
EarI	CTCTTC	2 cut(s)	165, 945
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	2 cut(s)	203, 1254
Eco130I	CCWWGG	2 cut(s)	23, 42
Eco147I	AGGCCT	1 cut(s)	919
Eco24I	GRGCYC	2 cut(s)	205, 1256
Eco47I	GGWCC	3 cut(s)	196, 765, 829
Eco53kI	GAGCTC	2 cut(s)	203, 1254
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	2 cut(s)	627, 1348
EcoICRI	GAGCTC	2 cut(s)	203, 1254
EcoRII	CCWGG	4 cut(s)	430, 860, 919, 997
EcoT14I	CCWWGG	2 cut(s)	23, 42
EcoT38I	GRGCYC	2 cut(s)	205, 1256
ErhI	CCWWGG	2 cut(s)	23, 42
FaeI	CATG	8 cut(s)	46, 896, 932, 941, 1006, 1079, 1157, 1412
FaqI	GGGAC	3 cut(s)	322, 624, 895
FatI	CATG	8 cut(s)	42, 892, 928, 937, 1002, 1075, 1153, 1408
FauI	CCCGC	3 cut(s)	109, 223, 732
FbaI	TGATCA	2 cut(s)	787, 844
FblI	GTMKAC	1 cut(s)	899
FokI	GGATG	4 cut(s)	361, 391, 433, 1400
FriOI	GRGCYC	2 cut(s)	205, 1256
FspBI	CTAG	6 cut(s)	152, 312, 474, 636, 702, 1371
GsaI	CCCAGC	2 cut(s)	74, 344
GsuI	CTGGAG	4 cut(s)	267, 502, 894, 981
HaeIII	GGCC	8 cut(s)	52, 148, 247, 548, 709, 919, 1119, 1419
HapII	CCGG	4 cut(s)	89, 269, 674, 1349
Hin1II	CATG	8 cut(s)	46, 896, 932, 941, 1006, 1079, 1157, 1412
HinfI	GANTC	8 cut(s)	796, 876, 896, 908, 983, 1150, 1157, 1392
HpaII	CCGG	4 cut(s)	89, 269, 674, 1349
HphI	GGTGA	5 cut(s)	688, 952, 1037, 1220, 1331
Hpy166II	GTNNAC	3 cut(s)	900, 1321, 1357
Hpy188I	TCNGA	6 cut(s)	200, 502, 982, 988, 1162, 1272
Hpy188III	TCNNGA	8 cut(s)	519, 629, 893, 905, 1076, 1111, 1154, 1402
Hpy8I	GTNNAC	3 cut(s)	900, 1321, 1357
HpyAV	CCTTC	2 cut(s)	1193, 1210
HpyCH4III	ACNGT	3 cut(s)	1144, 1328, 1427
HpyCH4IV	ACGT	1 cut(s)	1084
HpyCH4V	TGCA	9 cut(s)	80, 122, 323, 386, 392, 776, 941, 1335, 1357
HpyF3I	CTNAG	7 cut(s)	35, 367, 693, 756, 810, 987, 1271
HpySE526I	ACGT	1 cut(s)	1084
Hsp92II	CATG	8 cut(s)	46, 896, 932, 941, 1006, 1079, 1157, 1412
Ksp22I	TGATCA	2 cut(s)	787, 844
Kzo9I	GATC	5 cut(s)	778, 787, 844, 889, 1302
LweI	GCATC	3 cut(s)	14, 332, 383
MaeI	CTAG	6 cut(s)	152, 312, 474, 636, 702, 1371
MaeII	ACGT	1 cut(s)	1084
MaeIII	GTNAC	5 cut(s)	307, 484, 511, 644, 1226
MalI	GATC	5 cut(s)	780, 789, 846, 891, 1304
MboI	GATC	5 cut(s)	778, 787, 844, 889, 1302
MboII	GAAGA	4 cut(s)	152, 829, 962, 979
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	3 cut(s)	205, 1256, 1359
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	4 cut(s)	207, 393, 555, 1239
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	4 cut(s)	885, 905, 917, 1159
MmeI	TCCRAC	2 cut(s)	260, 525
Mox20I	TGGCCA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	1053
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	669, 761, 1242, 1429
MslI	CAYNNNNRTG	1 cut(s)	1413
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	2 cut(s)	194, 1264
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	4 cut(s)	89, 269, 674, 1349
MspR9I	CCNGG	7 cut(s)	89, 432, 862, 921, 999, 1349, 1350
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	1093
MvaI	CCWGG	4 cut(s)	432, 862, 921, 999
NciI	CCSGG	3 cut(s)	89, 1349, 1350
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	5 cut(s)	778, 787, 844, 889, 1302
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	8 cut(s)	46, 896, 932, 941, 1006, 1079, 1157, 1412
NlaIV	GGNNCC	5 cut(s)	93, 261, 465, 633, 996
NmuCI	GTSAC	3 cut(s)	307, 484, 1226
PagI	TCATGA	3 cut(s)	892, 1075, 1153
PceI	AGGCCT	1 cut(s)	919
PcsI	WCGNNNNNNNCGW	1 cut(s)	1350
PctI	GAATGC	1 cut(s)	1093
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	4 cut(s)	796, 983, 1157, 1392
PflMI	CCANNNNNTGG	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	430
PinAI	ACCGGT	1 cut(s)	268
PleI	GAGTC	4 cut(s)	884, 904, 916, 1158
PpsI	GAGTC	4 cut(s)	884, 904, 916, 1158
PshAI	GACNNNNGTC	1 cut(s)	1224
PsiI	TTATAA	1 cut(s)	1013
Psp124BI	GAGCTC	2 cut(s)	205, 1256
Psp6I	CCWGG	4 cut(s)	430, 860, 919, 997
PspFI	CCCAGC	2 cut(s)	70, 340
PspGI	CCWGG	4 cut(s)	430, 860, 919, 997
PspN4I	GGNNCC	5 cut(s)	93, 261, 465, 633, 996
PspPI	GGNCC	4 cut(s)	196, 708, 765, 829
PstI	CTGCAG	2 cut(s)	82, 778
PstNI	CAGNNNCTG	2 cut(s)	77, 1332
PvuII	CAGCTG	1 cut(s)	1264
RsaI	GTAC	5 cut(s)	420, 528, 622, 871, 1322
RsaNI	GTAC	5 cut(s)	419, 527, 621, 870, 1321
RseI	CAYNNNNRTG	1 cut(s)	1413
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SacI	GAGCTC	2 cut(s)	205, 1256
SaqAI	TTAA	4 cut(s)	669, 761, 1242, 1429
Sau3AI	GATC	5 cut(s)	778, 787, 844, 889, 1302
Sau96I	GGNCC	4 cut(s)	196, 708, 765, 829
ScaI	AGTACT	2 cut(s)	622, 871
SchI	GAGTC	4 cut(s)	885, 905, 917, 1159
ScrFI	CCNGG	7 cut(s)	89, 432, 862, 921, 999, 1349, 1350
SduI	GDGCHC	3 cut(s)	205, 1256, 1359
SfaNI	GCATC	3 cut(s)	14, 332, 383
SfcI	CTRYAG	3 cut(s)	78, 774, 1171
SinI	GGWCC	3 cut(s)	196, 765, 829
SmaI	CCCGGG	1 cut(s)	1350
SmiMI	CAYNNNNRTG	1 cut(s)	1413
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	207, 393, 555, 1239
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	8 cut(s)	49, 102, 149, 194, 212, 216, 408, 725
SspMI	CTAG	6 cut(s)	152, 312, 474, 636, 702, 1371
SstI	GAGCTC	2 cut(s)	205, 1256
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	7 cut(s)	87, 430, 860, 919, 997, 1347, 1348
StyI	CCWWGG	2 cut(s)	23, 42
TaaI	ACNGT	3 cut(s)	1144, 1328, 1427
TaiI	ACGT	1 cut(s)	1087
TaqI	TCGA	3 cut(s)	31, 133, 1395
TasI	AATT	4 cut(s)	207, 393, 555, 1239
TatI	WGTACW	3 cut(s)	620, 869, 1320
TauI	GCSGC	2 cut(s)	52, 151
TfiI	GAWTC	4 cut(s)	796, 983, 1157, 1392
Tru1I	TTAA	4 cut(s)	669, 761, 1242, 1429
Tru9I	TTAA	4 cut(s)	669, 761, 1242, 1429
TscAI	CASTG	4 cut(s)	501, 567, 778, 1195
TseFI	GTSAC	3 cut(s)	307, 484, 1226
Tsp45I	GTSAC	3 cut(s)	307, 484, 1226
TspDTI	ATGAA	5 cut(s)	402, 600, 1170, 1229, 1266
TspMI	CCCGGG	1 cut(s)	1348
TspRI	CASTG	4 cut(s)	501, 567, 778, 1195
Van91I	CCANNNNNTGG	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	1355
VpaK11BI	GGWCC	3 cut(s)	196, 765, 829
XmaI	CCCGGG	1 cut(s)	1348
XmiI	GTMKAC	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	6 cut(s)	152, 312, 474, 636, 702, 1371
ZrmI	AGTACT	2 cut(s)	622, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.