Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005903.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

17288 .. 17596

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005903.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgcttattccagaagataaacttctggcacagcatccgggaccagttgacataaatgtatctgttcctattgttgatgaaggtaacctcaaaggccaacttctacagatcacggtgcagtttttatctgaaactgttggcagtctgaaagagaaaatttctgcagaagtccaacttccggcaaacaaacagaaattgagtggaaaatcaggctttctcaaggataatttttcacttgcatattacaatgttggcgcaggacaaacactcgctctttcaataagagagcgcggtggaaggaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

9.35

Isoelectric Point (pI)

18.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	279
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	257, 291
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	104, 162
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	38, 179
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	115, 136
Bst6I	CTCTTC	1 cut(s)	296
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	257, 291
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	104, 162
BstUI	CGCG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	34
CfoI	GCGC	2 cut(s)	257, 291
Cfr13I	GGNCC	1 cut(s)	41
CviJI	RGCY	2 cut(s)	96, 213
CviKI_1	RGCY	2 cut(s)	96, 213
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
FaiI	YATR	2 cut(s)	53, 241
FalI	AAGNNNNNCTT	5 cut(s)	38, 84, 116, 159, 191
FaqI	GGGAC	1 cut(s)	54
FokI	GGATG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	256, 290
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	38, 179
HhaI	GCGC	2 cut(s)	257, 291
Hin6I	GCGC	2 cut(s)	255, 289
HinP1I	GCGC	2 cut(s)	255, 289
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	38, 179
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	130, 147
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	74, 291
HpyCH4III	ACNGT	2 cut(s)	115, 136
HpyCH4V	TGCA	3 cut(s)	118, 164, 239
HspAI	GCGC	2 cut(s)	255, 289
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	11, 24, 51, 57, 192, 195, 243
LweI	GCATC	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	3 cut(s)	156, 194, 226
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	98
MspI	CCGG	2 cut(s)	38, 179
MspR9I	CCNGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	291
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	2 cut(s)	85, 90
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	2 cut(s)	104, 162
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	156, 194, 226
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	115, 136
TasI	AATT	3 cut(s)	156, 194, 226
TspDTI	ATGAA	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.