Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034959.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 699

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 580 bp

agatgttgaagctggagcaccaaaacctgattctccctcccagcttagacctgaatgcaaagtgcctgaaccatcagaacctgaagagtttactgttcggcttcctgaaggaatttgtggagaagaactagatgttattaaactcacagcccaatgcatattcaaggtgttgatgccaccagaaggattgacagggaagctcaagaagagtgtggcagacatgtctactgtgctagaacggtgtgtgcatcggctggagtgggaggcttatcaaaagaaggcaaagcagaaggccgaagatgagattgagcaggaaaggttacaaatggctgcaattgattggcacgataatgtcttggtcaaagtcatagactttgatgatgttgaggatgactgtttacctcctccactgagcatcgaagaggttataaggggaagcaaagttgttatggtagcaaatgataatgtcgaaatggatatggatgaagaagagatgcaacttgttgaagatggaaaaggtaacagaggtggatccagaacaaccaccaatgagaattgtgaagaactggaagagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

192

Amino Acids

21.58

Weight (kDa)

4.36

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	526, 539
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	103, 127
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	9, 164, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	12, 44, 200
AluI	AGCT	3 cut(s)	12, 44, 200
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	526, 539
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	80, 504
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	2 cut(s)	129, 234
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	533
BmsI	GCATC	4 cut(s)	163, 257, 424, 484
BpmI	CTGGAG	2 cut(s)	34, 276
BpuEI	CTTGAG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	395, 488
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	533
BspPI	GGATC	2 cut(s)	526, 539
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	571
BssMI	GATC	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	95, 230, 241, 396
Bst6I	CTCTTC	5 cut(s)	79, 201, 415, 484, 565
BstDEI	CTNAG	2 cut(s)	45, 411
BstF5I	GGATG	2 cut(s)	395, 488
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	395, 488
BtsIMutI	CAGTG	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	81
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	9 cut(s)	12, 44, 101, 150, 200, 254, 267, 294, 330
CviKI_1	RGCY	9 cut(s)	12, 44, 101, 150, 200, 254, 267, 294, 330
DdeI	CTNAG	2 cut(s)	45, 411
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Eam1104I	CTCTTC	5 cut(s)	79, 201, 415, 484, 565
EarI	CTCTTC	5 cut(s)	79, 201, 415, 484, 565
Eco31I	GGTCTC	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	103, 127
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	1 cut(s)	224
FaiI	YATR	6 cut(s)	159, 222, 369, 429, 450, 480
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	2 cut(s)	402, 495
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	2 cut(s)	129, 234
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	2 cut(s)	34, 276
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	91, 226, 399
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	105, 203, 535
Hpy8I	GTNNAC	3 cut(s)	91, 226, 399
HpyAV	CCTTC	4 cut(s)	102, 177, 272, 284
HpyCH4III	ACNGT	4 cut(s)	95, 230, 241, 396
HpyCH4V	TGCA	5 cut(s)	58, 157, 248, 333, 497
HpyF3I	CTNAG	2 cut(s)	45, 411
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	4 cut(s)	163, 257, 424, 484
MaeI	CTAG	2 cut(s)	129, 234
MaeIII	GTNAC	2 cut(s)	319, 519
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	9 cut(s)	96, 135, 218, 309, 432, 498, 501, 519, 573
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	112, 334, 554
MnlI	CCTC	7 cut(s)	47, 257, 380, 412, 415, 416, 519
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	332
PscI	ACATGT	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	139
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	4 cut(s)	163, 257, 424, 484
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	112, 334, 554
SspMI	CTAG	2 cut(s)	129, 234
TaaI	ACNGT	4 cut(s)	95, 230, 241, 396
TaqI	TCGA	2 cut(s)	418, 469
TasI	AATT	3 cut(s)	112, 334, 554
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	139
Tru9I	TTAA	1 cut(s)	139
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	129, 234
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.