Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005903.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

20513 .. 21571

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005903.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgatccaatccagtgctgaaagggacatgacgatttcccctattactggggagcttgtccctaacaatgagatgtctgagcacatgaagatttccctcattgatccaagatacagagaacagaaagaaaggatgtttgctaagattcgggagactagtcttgttcttgcacaggacgatgagatctcaagaaacatagtgaaccttgcgcggacccgtcctgatatttttggttccaccgaggaggaagtttcaaatgctgtcaaggctgagattcaaaatcaagcgatatcacagagtatcaatggagaggataagaatgatgctgtgaacaatgagctaaggaactttcctggtctagcaagacctgacatgccttcagttcgacctcaacctccaccaactggccttcttcctcgtgttcctctaagcacggttcagtgttcagctcctaatagcattggcctcccaatacctcctccagttgtccaatttccatacgttggagctcctctgccacctcaatcaatatttacgaatgcaactaatattcctgcaccatctccacctgtagctcagtttacacctatgcaagttccccaaaggaattatattcctccaccttcagtacatatgatgcccctgcctccaccaccacctttacctcaagaaatgcatctaccaccaccaccaccatctccagttgcagaggaggaacccaagccaaagcgacagaagctcgatgattcaatgcttattccagaagataaatttctggcacagcatccgggaccagttgacatgaatgtatctgttcctattgttgatgaaggtaacctcaaaggccaacttctacagatcacggtgcagtctttatctgaaactgttggcagtctgaaagagaaaatttctgcagaagtccaacttccggcaaacaaacataaattgagtggaaaatcaggctttctcaaggataaattttcacttgcatattacaatgttggcgcaggacaaacactcgctctttcaataagagagcgcggtggaaggaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

352

Amino Acids

38.61

Weight (kDa)

6.26

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	404, 503
AccII	CGCG	2 cut(s)	211, 1041
AciI	CCGC	2 cut(s)	211, 1041
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	3 cut(s)	770, 906, 977
AcuI	CTGAAG	2 cut(s)	363, 609
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	4 cut(s)	47, 404, 503, 928
AgsI	TTSAA	4 cut(s)	255, 278, 750, 1029
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	6 cut(s)	55, 340, 449, 509, 575, 739
AluI	AGCT	6 cut(s)	55, 340, 449, 509, 575, 739
Alw21I	GWGCWC	2 cut(s)	84, 511
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	406, 463, 844
ApoI	RAATTY	3 cut(s)	770, 906, 977
AspLEI	GCGC	3 cut(s)	211, 1007, 1041
AspS9I	GGNCC	2 cut(s)	213, 791
AsuC2I	CCSGG	1 cut(s)	789
AvaII	GGWCC	2 cut(s)	213, 791
BanII	GRGCYC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	84, 511
BccI	CCATC	2 cut(s)	568, 703
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	789
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	2 cut(s)	156, 359
BfmI	CTRYAG	3 cut(s)	570, 854, 912
BglII	AGATCT	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	354, 789
Bme18I	GGWCC	2 cut(s)	213, 791
BmgT120I	GGNCC	2 cut(s)	213, 791
BmiI	GGNNCC	4 cut(s)	215, 235, 717, 792
BmrFI	CCNGG	2 cut(s)	354, 789
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	4 cut(s)	313, 627, 685, 793
BmuI	ACTGGG	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	465, 684
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	3 cut(s)	172, 651, 953
BpuMI	CCSGG	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 404, 503, 928
Bse1I	ACTGG	6 cut(s)	12, 52, 409, 482, 701, 794
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	138, 784
BseLI	CCNNNNNNNGG	4 cut(s)	47, 404, 503, 928
BseMII	CTCAG	3 cut(s)	69, 261, 590
BseNI	ACTGG	6 cut(s)	12, 52, 409, 482, 701, 794
BseRI	GAGGAG	4 cut(s)	257, 468, 501, 725
BsgI	GTGCAG	2 cut(s)	540, 887
Bsh1236I	CGCG	2 cut(s)	211, 1041
BshFI	GGCC	3 cut(s)	408, 465, 846
BsiHKAI	GWGCWC	2 cut(s)	84, 511
BsiSI	CCGG	2 cut(s)	788, 929
BslFI	GGGAC	3 cut(s)	38, 44, 804
BslI	CCNNNNNNNGG	4 cut(s)	47, 404, 503, 928
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	38, 44, 804
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	408, 465, 846
Bsp1286I	GDGCHC	2 cut(s)	84, 511
Bsp143I	GATC	4 cut(s)	3, 103, 183, 858
BspACI	CCGC	2 cut(s)	211, 1041
BspANI	GGCC	3 cut(s)	408, 465, 846
BspCNI	CTCAG	3 cut(s)	70, 262, 589
BspFNI	CGCG	2 cut(s)	211, 1041
BspLI	GGNNCC	4 cut(s)	215, 235, 717, 792
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	98
BsrI	ACTGG	6 cut(s)	12, 52, 409, 482, 701, 794
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	3, 103, 183, 858
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	436, 865, 886
Bst6I	CTCTTC	1 cut(s)	1046
BstDEI	CTNAG	6 cut(s)	78, 141, 270, 341, 428, 576
BstEII	GGTNACC	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	138, 784
BstFNI	CGCG	2 cut(s)	211, 1041
BstHHI	GCGC	3 cut(s)	211, 1007, 1041
BstKTI	GATC	4 cut(s)	6, 106, 186, 861
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	3, 103, 183, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 736
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	2 cut(s)	352, 787
BstSFI	CTRYAG	3 cut(s)	570, 854, 912
BstUI	CGCG	2 cut(s)	211, 1041
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	408, 465, 846
BtsCI	GGATG	2 cut(s)	138, 784
BtsIMutI	CAGTG	2 cut(s)	19, 446
CfoI	GCGC	3 cut(s)	211, 1007, 1041
Cfr13I	GGNCC	2 cut(s)	213, 791
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	4 cut(s)	28, 85, 373, 802
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	6 cut(s)	78, 141, 270, 341, 428, 576
DpnI	GATC	4 cut(s)	5, 105, 185, 860
DpnII	GATC	4 cut(s)	3, 103, 183, 858
Eam1104I	CTCTTC	1 cut(s)	1046
EarI	CTCTTC	1 cut(s)	1046
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	213, 791
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	363, 609
Eco91I	GGTNACC	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	833
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	4 cut(s)	31, 88, 376, 805
FalI	AAGNNNNNCTT	4 cut(s)	834, 866, 909, 941
FaqI	GGGAC	3 cut(s)	38, 44, 804
FatI	CATG	4 cut(s)	27, 84, 372, 801
FauNDI	CATATG	1 cut(s)	633
FokI	GGATG	2 cut(s)	145, 771
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	2 cut(s)	156, 359
GlaI	GCGC	3 cut(s)	210, 1006, 1040
GsuI	CTGGAG	2 cut(s)	465, 684
HaeIII	GGCC	3 cut(s)	408, 465, 846
HapII	CCGG	2 cut(s)	788, 929
HhaI	GCGC	3 cut(s)	211, 1007, 1041
Hin1II	CATG	4 cut(s)	31, 88, 376, 805
Hin6I	GCGC	3 cut(s)	209, 1005, 1039
HinP1I	GCGC	3 cut(s)	209, 1005, 1039
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	3 cut(s)	145, 274, 746
HpaII	CCGG	2 cut(s)	788, 929
Hpy166II	GTNNAC	4 cut(s)	202, 331, 582, 799
Hpy188I	TCNGA	3 cut(s)	79, 880, 897
Hpy188III	TCNNGA	5 cut(s)	149, 189, 221, 668, 761
Hpy8I	GTNNAC	4 cut(s)	202, 331, 582, 799
HpyAV	CCTTC	5 cut(s)	387, 419, 633, 824, 1041
HpyCH4III	ACNGT	3 cut(s)	436, 865, 886
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	9 cut(s)	170, 542, 557, 592, 676, 707, 868, 914, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 736
HpyF3I	CTNAG	6 cut(s)	78, 141, 270, 341, 428, 576
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	31, 88, 376, 805
HspAI	GCGC	3 cut(s)	209, 1005, 1039
Kzo9I	GATC	4 cut(s)	3, 103, 183, 858
LmnI	GCTCC	4 cut(s)	52, 454, 506, 514
LweI	GCATC	4 cut(s)	313, 627, 685, 793
MaeI	CTAG	2 cut(s)	156, 359
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	4 cut(s)	5, 105, 185, 860
MboI	GATC	4 cut(s)	3, 103, 183, 858
MboII	GAAGA	3 cut(s)	100, 404, 776
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	2 cut(s)	84, 511
MluCI	AATT	6 cut(s)	491, 607, 770, 906, 944, 977
MmeI	TCCRAC	2 cut(s)	484, 946
Mph1103I	ATGCAT	1 cut(s)	678
MspI	CCGG	2 cut(s)	788, 929
MspR9I	CCNGG	2 cut(s)	354, 789
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	2 cut(s)	211, 1041
MwoI	GCNNNNNNNGC	2 cut(s)	266, 736
NciI	CCSGG	1 cut(s)	789
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	4 cut(s)	3, 103, 183, 858
NlaIII	CATG	4 cut(s)	31, 88, 376, 805
NlaIV	GGNNCC	4 cut(s)	215, 235, 717, 792
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	1 cut(s)	376
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	145, 274, 746
PflMI	CCANNNNNTGG	2 cut(s)	404, 503
PfoI	TCCNGGA	1 cut(s)	787
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	215, 235, 717, 792
PspPI	GGNCC	2 cut(s)	213, 791
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	511
Sau3AI	GATC	4 cut(s)	3, 103, 183, 858
Sau96I	GGNCC	2 cut(s)	213, 791
ScrFI	CCNGG	2 cut(s)	354, 789
SduI	GDGCHC	2 cut(s)	84, 511
SfaNI	GCATC	4 cut(s)	313, 627, 685, 793
SfcI	CTRYAG	3 cut(s)	570, 854, 912
SinI	GGWCC	2 cut(s)	213, 791
SmlI	CTYRAG	3 cut(s)	187, 666, 968
SmoI	CTYRAG	3 cut(s)	187, 666, 968
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	6 cut(s)	491, 607, 770, 906, 944, 977
SsiI	CCGC	2 cut(s)	211, 1041
SspI	AATATT	2 cut(s)	531, 550
SspMI	CTAG	2 cut(s)	156, 359
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	352, 787
TaaI	ACNGT	3 cut(s)	436, 865, 886
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	385, 741
TasI	AATT	6 cut(s)	491, 607, 770, 906, 944, 977
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	3 cut(s)	145, 274, 746
TscAI	CASTG	2 cut(s)	19, 446
TspDTI	ATGAA	3 cut(s)	101, 818, 843
TspRI	CASTG	2 cut(s)	19, 446
Van91I	CCANNNNNTGG	2 cut(s)	404, 503
VpaK11BI	GGWCC	2 cut(s)	213, 791
XapI	RAATTY	3 cut(s)	770, 906, 977
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	2 cut(s)	156, 359
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.