Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013941.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Reverse (-)

2745 .. 3955

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013941.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1211 bp

tcatagctaagaatctagacatagcaaaatcaaatctaagctttttgatttcctcaaatccctacaatgcatattataagctccgggtgtctgaattccttgcccagcctgatcagtcttatgaaaagccagcgagagttgtagatgttgaagctggagcaccaaaacctgattctccctcccagcttagacctgaatgcaaagtgcctgaaccatcagaacccgaagagtttactgttcggcttcctgaaggaatttgtggagaagaactagatgttattaaactcacagcccagtttgtagctcggaatgggaaatcgtttttgacaggattgagaagcagagagatgaacaaccccctgttctattttctcaggccaaatcatagcatgttcaactttttcacttctctggcagatgcatattcaaaggtgttgatgccaccagaaggattgacagggaagctcaagaagagcgtggcagacatgtctactgtgctagaacggtgtgtgcatcggctggagtgggaggcttatcaaaagaaggcaaagcagaaggccgaagatgagattgagcaggaaaggttacaaatggctgcaattgattggcacgataatgtcttggtcaaagtcatagactttgatgatgttgaggatgactgtttacctcctccactgagcatcgaagaggttataaggggaagcaaagttgttatggaagcagatgataatgtcgaaatggatatggatgaagaagagatgcaacttgttgaagatggaaagagggtaacagaggtggccccaccaccacctttacctcaagaaatgcatctaccaccaccaccaccacctccagttgcagaggaggaacccaagccaaagcgacagaagctcgatgattcaatgcttattccagaagataaatttatggcacagcatccgggaccagttgacatgaatgtatctgttcctattgttgatgaaggtaacctcaaaggccaacttctacagatcacggtgcagtctttatctgaaactgttggcagtctgaaagagaaaatttctgcagaaatccaacttccggcaaacaaacagaaattgagtggaaaatcaggctttctcaaggacaatttttcacttgcatattacaatgttggcgcaggacaaacactcgctctttcaataagagagcgcggtggaaggaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

402

Amino Acids

45.07

Weight (kDa)

4.96

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	77, 694
AccI	GTMKAC	1 cut(s)	490
AccII	CGCG	1 cut(s)	1193
AciI	CCGC	1 cut(s)	1193
AcsI	RAATTY	4 cut(s)	94, 254, 922, 1058
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	448, 1080
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	151, 396, 428, 772, 902, 1181
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	8 cut(s)	7, 41, 81, 154, 186, 304, 465, 891
AluI	AGCT	8 cut(s)	7, 41, 81, 154, 186, 304, 465, 891
Alw21I	GWGCWC	1 cut(s)	162
AoxI	GGCC	4 cut(s)	376, 557, 797, 996
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	4 cut(s)	94, 254, 922, 1058
AspLEI	GCGC	2 cut(s)	1159, 1193
AspS9I	GGNCC	2 cut(s)	798, 943
AsuC2I	CCSGG	2 cut(s)	85, 941
AvaII	GGWCC	1 cut(s)	943
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	2 cut(s)	222, 769
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	85, 941
BfaI	CTAG	3 cut(s)	16, 271, 499
BfmI	CTRYAG	2 cut(s)	1006, 1064
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	2 cut(s)	85, 941
Bme18I	GGWCC	1 cut(s)	943
BmgT120I	GGNCC	2 cut(s)	798, 943
BmiI	GGNNCC	3 cut(s)	800, 869, 944
BmrFI	CCNGG	2 cut(s)	85, 941
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	7 cut(s)	408, 428, 522, 689, 749, 837, 945
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	3 cut(s)	176, 541, 836
BpuEI	CTTGAG	3 cut(s)	451, 803, 1105
BpuMI	CCSGG	2 cut(s)	85, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 1080
Bse1I	ACTGG	3 cut(s)	294, 853, 946
BseGI	GGATG	3 cut(s)	660, 753, 936
BseLI	CCNNNNNNNGG	2 cut(s)	448, 1080
BseMII	CTCAG	2 cut(s)	387, 667
BseNI	ACTGG	3 cut(s)	294, 853, 946
BseRI	GAGGAG	2 cut(s)	659, 877
BseXI	GCAGC	1 cut(s)	582
BseYI	CCCAGC	2 cut(s)	104, 182
BsgI	GTGCAG	1 cut(s)	1039
Bsh1236I	CGCG	1 cut(s)	1193
BshFI	GGCC	4 cut(s)	378, 559, 799, 998
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	84, 940, 1081
BslFI	GGGAC	1 cut(s)	956
BslI	CCNNNNNNNGG	2 cut(s)	448, 1080
BsmFI	GGGAC	1 cut(s)	956
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	4 cut(s)	378, 559, 799, 998
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	111, 1010
BspACI	CCGC	1 cut(s)	1193
BspANI	GGCC	4 cut(s)	378, 559, 799, 998
BspCNI	CTCAG	2 cut(s)	386, 668
BspFNI	CGCG	1 cut(s)	1193
BspLI	GGNNCC	3 cut(s)	800, 869, 944
BspMAI	CTGCAG	1 cut(s)	1068
BspQI	GCTCTTC	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	294, 853, 946
BssMI	GATC	2 cut(s)	111, 1010
Bst4CI	ACNGT	6 cut(s)	237, 495, 506, 661, 1017, 1038
Bst6I	CTCTTC	5 cut(s)	221, 466, 680, 749, 1198
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	5 cut(s)	8, 37, 187, 373, 676
BstEII	GGTNACC	1 cut(s)	985
BstF5I	GGATG	3 cut(s)	660, 753, 936
BstFNI	CGCG	1 cut(s)	1193
BstHHI	GCGC	2 cut(s)	1159, 1193
BstKTI	GATC	2 cut(s)	114, 1013
BstMBI	GATC	2 cut(s)	111, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	888
BstNSI	RCATGY	2 cut(s)	393, 489
BstPI	GGTNACC	1 cut(s)	985
BstSCI	CCNGG	2 cut(s)	83, 939
BstSFI	CTRYAG	2 cut(s)	1006, 1064
BstUI	CGCG	1 cut(s)	1193
BstV1I	GCAGC	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	378, 559, 799, 998
BtsCI	GGATG	3 cut(s)	660, 753, 936
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	1159, 1193
Cfr13I	GGNCC	2 cut(s)	798, 943
CviAII	CATG	3 cut(s)	390, 486, 954
DdeI	CTNAG	5 cut(s)	8, 37, 187, 373, 676
DpnI	GATC	2 cut(s)	113, 1012
DpnII	GATC	2 cut(s)	111, 1010
Eam1104I	CTCTTC	5 cut(s)	221, 466, 680, 749, 1198
EarI	CTCTTC	5 cut(s)	221, 466, 680, 749, 1198
Eco47I	GGWCC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	985
EcoO65I	GGTNACC	1 cut(s)	985
EcoRI	GAATTC	1 cut(s)	94
EcoT22I	ATGCAT	3 cut(s)	72, 423, 830
FaeI	CATG	3 cut(s)	393, 489, 957
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	3 cut(s)	389, 485, 953
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	3 cut(s)	667, 760, 923
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	3 cut(s)	16, 271, 499
GlaI	GCGC	2 cut(s)	1158, 1192
GluI	GCNGC	1 cut(s)	596
GsaI	CCCAGC	2 cut(s)	108, 186
GsuI	CTGGAG	3 cut(s)	176, 541, 836
HaeIII	GGCC	4 cut(s)	378, 559, 799, 998
HapII	CCGG	3 cut(s)	84, 940, 1081
HhaI	GCGC	2 cut(s)	1159, 1193
Hin1II	CATG	3 cut(s)	393, 489, 957
Hin6I	GCGC	2 cut(s)	1157, 1191
HinP1I	GCGC	2 cut(s)	1157, 1191
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	3 cut(s)	12, 172, 898
HpaII	CCGG	3 cut(s)	84, 940, 1081
Hpy166II	GTNNAC	4 cut(s)	233, 491, 664, 951
Hpy188I	TCNGA	5 cut(s)	93, 219, 308, 1032, 1049
Hpy188III	TCNNGA	5 cut(s)	16, 247, 468, 820, 913
Hpy8I	GTNNAC	4 cut(s)	233, 491, 664, 951
HpyAV	CCTTC	6 cut(s)	244, 442, 537, 549, 976, 1193
HpyCH4III	ACNGT	6 cut(s)	237, 495, 506, 661, 1017, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	888
HpyF3I	CTNAG	5 cut(s)	8, 37, 187, 373, 676
Hsp92II	CATG	3 cut(s)	393, 489, 957
HspAI	GCGC	2 cut(s)	1157, 1191
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 1010
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	86, 157
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	7 cut(s)	408, 428, 522, 689, 749, 837, 945
MaeI	CTAG	3 cut(s)	16, 271, 499
MaeIII	GTNAC	3 cut(s)	584, 786, 985
MalI	GATC	2 cut(s)	113, 1012
MboI	GATC	2 cut(s)	111, 1010
MboII	GAAGA	9 cut(s)	238, 277, 483, 574, 697, 763, 766, 784, 928
MfeI	CAATTG	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	7 cut(s)	94, 254, 599, 922, 1058, 1096, 1128
MmeI	TCCRAC	1 cut(s)	1098
Mph1103I	ATGCAT	3 cut(s)	72, 423, 830
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	3 cut(s)	84, 940, 1081
MspR9I	CCNGG	2 cut(s)	85, 941
MunI	CAATTG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	202
MvnI	CGCG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	1 cut(s)	888
NciI	CCSGG	2 cut(s)	85, 941
NdeII	GATC	2 cut(s)	111, 1010
NlaIII	CATG	3 cut(s)	393, 489, 957
NlaIV	GGNNCC	3 cut(s)	800, 869, 944
NsiI	ATGCAT	3 cut(s)	72, 423, 830
NspI	RCATGY	2 cut(s)	393, 489
PciI	ACATGT	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	12, 172, 898
PfoI	TCCNGGA	1 cut(s)	939
PkrI	GCNGC	1 cut(s)	597
PscI	ACATGT	1 cut(s)	485
PsiI	TTATAA	2 cut(s)	77, 694
PspEI	GGTNACC	1 cut(s)	985
PspFI	CCCAGC	2 cut(s)	104, 182
PspN4I	GGNNCC	3 cut(s)	800, 869, 944
PspPI	GGNCC	2 cut(s)	798, 943
PstI	CTGCAG	1 cut(s)	1068
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	2 cut(s)	111, 1010
Sau96I	GGNCC	2 cut(s)	798, 943
ScrFI	CCNGG	2 cut(s)	85, 941
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	7 cut(s)	408, 428, 522, 689, 749, 837, 945
SfcI	CTRYAG	2 cut(s)	1006, 1064
SinI	GGWCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	3 cut(s)	466, 818, 1120
SmoI	CTYRAG	3 cut(s)	466, 818, 1120
Sse9I	AATT	7 cut(s)	94, 254, 599, 922, 1058, 1096, 1128
SsiI	CCGC	1 cut(s)	1193
SspMI	CTAG	3 cut(s)	16, 271, 499
StyD4I	CCNGG	2 cut(s)	83, 939
TaaI	ACNGT	6 cut(s)	237, 495, 506, 661, 1017, 1038
TaqI	TCGA	3 cut(s)	683, 734, 893
TasI	AATT	7 cut(s)	94, 254, 599, 922, 1058, 1096, 1128
TfiI	GAWTC	3 cut(s)	12, 172, 898
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	680
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	137, 364, 764, 970, 995
TspRI	CASTG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	4 cut(s)	94, 254, 922, 1058
XbaI	TCTAGA	1 cut(s)	15
XceI	RCATGY	2 cut(s)	393, 489
XmiI	GTMKAC	1 cut(s)	490
XspI	CTAG	3 cut(s)	16, 271, 499
Zsp2I	ATGCAT	3 cut(s)	72, 423, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.