Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

28748002 .. 28748310

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTTATTCCGGAAGATCGGTTTCTGGCACAGCATCGGGGACCTGTTTGCATCAGAGTTTCTGTCCCCAGTGCCAACGAAGGTAATCTGAAGGGGCAATTTTTGGAGATTACAGTGCAGTCTTTGTCTGAATCTGTTGTTAAGCTGAAAGAAAAAATTTCCACGGAGATTCAGCTTCCTGCAAATAAACAGAAACTGAGTGGAAAACCCGGCTTTCTCAAGGACAATTTGTCGCTTGCTTACTACATTGTTGGAGCTGGAGAAACACTTACCCTTTCAGTACGAAAGCGTGGTGGAAGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

103

Amino Acids

11.25

Weight (kDa)

10.0

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	41 - 97	1e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	282
AhdI	GACNNNNNGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	145, 175, 257
AluI	AGCT	3 cut(s)	145, 175, 257
AlwNI	CAGNNNCTG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	43, 60
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	11, 210
BslFI	GGGAC	2 cut(s)	50, 54
BsmFI	GGGAC	2 cut(s)	50, 54
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	76, 120
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	281
CviJI	RGCY	4 cut(s)	145, 175, 213, 257
CviKI_1	RGCY	4 cut(s)	145, 175, 213, 257
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	41
FaqI	GGGAC	2 cut(s)	50, 54
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	2 cut(s)	11, 210
HinfI	GANTC	2 cut(s)	131, 169
HpaII	CCGG	2 cut(s)	11, 210
Hpy188I	TCNGA	3 cut(s)	56, 90, 130
Hpy188III	TCNNGA	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	74, 85
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	51, 118, 182
HpyF3I	CTNAG	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	7 cut(s)	11, 24, 57, 82, 192, 223, 243
LweI	GCATC	2 cut(s)	43, 60
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	26, 309
MluCI	AATT	3 cut(s)	98, 156, 226
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	11, 210
MspR9I	CCNGG	1 cut(s)	210
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	131, 169
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	41
PspPPI	RGGWCCY	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	6 cut(s)	46, 85, 147, 177, 259, 308
SfaNI	GCATC	2 cut(s)	43, 60
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	98, 156, 226
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	3 cut(s)	98, 156, 226
TfiI	GAWTC	2 cut(s)	131, 169
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	76, 120
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	76, 120
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.