Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Reverse (-)

9289478 .. 9301681

Gene Structure 12204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGTCATCTTATGAGCAGAGGGTCCAACCCTATGAGAAAAGATACCAGTATCTTCTGTTTGTAGCCGAACCATACGAGATAATTGCTTTTAAGGTTCCTAGTACAGAGATTGACAAATCGACTCCGAAGTTCTTCTCACATTGGGATCCAGACTCCAAAATGTTCACGTTGCAGCTATATTTCAAAGTTAAGCCACCAGAGACGAACAAACCTCAACCTCCCCCAAATGCCATTGGCACAGGTGCTCCTGGAGTTCCTTCAAGGCCTCTACCCCCACCACCCCGAGGTCCACCTCCTCCTCCTCCACAAGGAATGGAGCCTGGTGCACCTATGGGAAACCCTCCTAGAGCTCCACCAACTATTCCTGGTTCCTTACTGCCACCTCCTCCTATGGTAAATGGCCCTGGGCCTATGCCTCCTGGTGGGGCTCCACCTGCCCCACCTCCACCTCCTGTCAGCAATAACACAATGACCGTGATGATGATGATAGGTTCCATCTTACCCTTACCAGCTCCTCCTGCAAAATCAGTTGCCACGCATACCAAGGCTATTGGTATCATACCTCCTCCTCCAGGAATCAAAGTCGTCATTGATAAAACTGCTCAGTTCGTGGCAAAGAACGGACCCCAATTTGAACAGGTCATAGCTAAGAATCTAGACATAGCAAAATCAAATCTAAGCTTTTTGATTTCCTCAAATCCCTACAATGCATATTATAAGCGCCGGGTGTCTGAACTCCTTGCCCAGCCTGATCAGTCTTATGAAGAGCCAGCTCCAGTTGTAGATGTTGAAGCTGGAGCACCAAAACCTGATTCTCCCTCCCAGCTTAGACCTGAATGCAAAGTGCCTGAACCATCAGAACCCGAAGAGTTTACTGTTCGGCTTCCTAAAGGAATTTGTGGAGAAGAACTAGATGTTATTAAACTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGGATTGAGAAGCAGAGAGATGAACAACCCCCTGTTCTATTTTCTCAAGCCTAATCATAGCATGTTCAACTTTTTCACTTCTCTGGCAGATGCATATTCAAAGGTGTTGATGCCACCAGAAGGATTGACAGGGAAGCTCAAGAAGAGCGTGGCAGACATGTCTACTGTGCTAGAACGGTGTGTGCATCGGCTGGAGTGGGAGACTTATCAAAAGAAGGCAAAGCAAAAGGCCGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCACTGAGCATCGAAGAGGTTATAAGGGGAAGCAAAGTTGTTATGGAAGCAGATGGTAATGTCGAAATGGATATGGATGAAGAAGAGATGCAACTTGTTGAAGATGGAAAGAGGGTAACAGAGGTGGATCCAGAACAACGACCAATGAGAATTGTGAAGAACTGGAAGAGACCTGAGGAGAGGATGATCCAATCCAGTGCTGAAAGGGACATGACGATTTCCCCTATTACTGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAAGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGAGAGACTAGTCTTGTTCTTGCACAGGACGATGAGATCTCAAGAAACATAGTGAACCTTGCGCGAACCCGTCCTGATATTTTTGGTTCCACCGAGGAGGAAGTTTCAAATGCTGTCAAGTGCCTCCTCGCTGAAGAAAAGCACACACTCAGAGAGAGAGAGAGAGAGCTTTTGAACTCGGAGAAGAGACTCAGTGAGTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

615

Amino Acids

68.94

Weight (kDa)

5.24

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3A2	PF16835	1 - 55	4e-17	Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
Surp	PF01805	196 - 245	6.8e-15	Surp module
Surp	PF01805	304 - 355	3.1e-17	Surp module
PRP21_like_P	PF12230	374 - 569	3.1e-47	Pre-mRNA splicing factor PRP21 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	717, 1334
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	1130
AccII	CGCG	1 cut(s)	1705
AclWI	GGATC	6 cut(s)	140, 153, 1433, 1446, 1492, 1592
AcsI	RAATTY	1 cut(s)	894
AcuI	CTGAAG	1 cut(s)	1794
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	6 cut(s)	284, 308, 422, 572, 1088, 1541
AflIII	ACRYGT	1 cut(s)	1125
AgsI	TTSAA	9 cut(s)	184, 261, 635, 791, 1036, 1068, 1412, 1749, 1816
AhlI	ACTAGT	1 cut(s)	1649
AjnI	CCWGG	6 cut(s)	247, 319, 364, 403, 418, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
Alw21I	GWGCWC	5 cut(s)	247, 328, 352, 802, 1578
Alw26I	GTCTC	5 cut(s)	194, 1163, 1474, 1640, 1822
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	6 cut(s)	140, 153, 1433, 1446, 1492, 1592
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	4 cut(s)	263, 400, 407, 1197
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	172, 1235
ApoI	RAATTY	1 cut(s)	894
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	723, 1705
AspS9I	GGNCC	5 cut(s)	22, 287, 401, 407, 623
AsuC2I	CCSGG	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	22, 287, 623
AxyI	CCTNAGG	1 cut(s)	1485
BaeGI	GKGCMC	1 cut(s)	328
BamHI	GGATCC	2 cut(s)	145, 1438
BanII	GRGCYC	2 cut(s)	352, 430
Bbv12I	GWGCWC	5 cut(s)	247, 328, 352, 802, 1578
BbvI	GCAGC	2 cut(s)	184, 1222
BccI	CCATC	4 cut(s)	503, 862, 1358, 1409
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	6 cut(s)	249, 321, 366, 405, 420, 573
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	5 cut(s)	194, 1163, 1474, 1640, 1822
BcuI	ACTAGT	1 cut(s)	1649
BfaI	CTAG	6 cut(s)	99, 345, 656, 911, 1139, 1650
BfoI	RGCGCY	1 cut(s)	724
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	1677
BisI	GCNGC	2 cut(s)	173, 1236
BlsI	GCNGC	2 cut(s)	174, 1237
Bme1390I	CCNGG	7 cut(s)	249, 321, 366, 405, 420, 573, 725
Bme18I	GGWCC	3 cut(s)	22, 287, 623
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	5 cut(s)	22, 287, 401, 407, 623
BmrFI	CCNGG	7 cut(s)	249, 321, 366, 405, 420, 573, 725
BmrI	ACTGGG	2 cut(s)	928, 1551
BmsI	GCATC	5 cut(s)	1048, 1068, 1162, 1329, 1389
BmuI	ACTGGG	2 cut(s)	928, 1551
BpmI	CTGGAG	5 cut(s)	270, 555, 759, 816, 1181
BpuEI	CTTGAG	3 cut(s)	998, 1091, 1666
BpuMI	CCSGG	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	1474
BsaJI	CCNNGG	5 cut(s)	283, 403, 404, 543, 1734
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	6 cut(s)	284, 308, 422, 572, 1088, 1541
Bse1I	ACTGG	6 cut(s)	46, 776, 934, 1478, 1506, 1546
Bse21I	CCTNAGG	1 cut(s)	1485
BseBI	CCWGG	6 cut(s)	249, 321, 366, 405, 420, 573
BseDI	CCNNGG	5 cut(s)	283, 403, 404, 543, 1734
BseGI	GGATG	4 cut(s)	1300, 1393, 1500, 1632
BseLI	CCNNNNNNNGG	6 cut(s)	284, 308, 422, 572, 1088, 1541
BseMII	CTCAG	6 cut(s)	617, 1307, 1476, 1563, 1804, 1846
BseNI	ACTGG	6 cut(s)	46, 776, 934, 1478, 1506, 1546
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	184, 1222
BseYI	CCCAGC	2 cut(s)	744, 822
Bsh1236I	CGCG	1 cut(s)	1705
BshFI	GGCC	4 cut(s)	265, 402, 409, 1199
BsiHKAI	GWGCWC	5 cut(s)	247, 328, 352, 802, 1578
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	724
BslFI	GGGAC	2 cut(s)	1532, 1538
BslI	CCNNNNNNNGG	6 cut(s)	284, 308, 422, 572, 1088, 1541
BsmAI	GTCTC	5 cut(s)	194, 1163, 1474, 1640, 1822
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	1532, 1538
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	4 cut(s)	265, 402, 409, 1199
Bso31I	GGTCTC	1 cut(s)	1474
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	6 cut(s)	247, 328, 352, 430, 802, 1578
Bsp143I	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
BspANI	GGCC	4 cut(s)	265, 402, 409, 1199
BspCNI	CTCAG	6 cut(s)	616, 1308, 1477, 1564, 1803, 1845
BspFNI	CGCG	1 cut(s)	1705
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	6 cut(s)	140, 153, 1433, 1446, 1492, 1592
BspQI	GCTCTTC	2 cut(s)	759, 1106
BspTNI	GGTCTC	1 cut(s)	1474
BsrI	ACTGG	6 cut(s)	46, 776, 934, 1478, 1506, 1546
BssECI	CCNNGG	5 cut(s)	283, 403, 404, 543, 1734
BssMI	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	6 cut(s)	249, 321, 366, 405, 420, 573
Bst4CI	ACNGT	5 cut(s)	475, 877, 1135, 1146, 1845
Bst6I	CTCTTC	7 cut(s)	759, 861, 1106, 1320, 1389, 1472, 1820
BstC8I	GCNNGC	1 cut(s)	771
BstENI	CCTNNNNNAGG	2 cut(s)	306, 570
BstF5I	GGATG	4 cut(s)	1300, 1393, 1500, 1632
BstFNI	CGCG	1 cut(s)	1705
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	723, 1705
BstKTI	GATC	6 cut(s)	148, 754, 1441, 1500, 1600, 1680
BstMAI	GTCTC	5 cut(s)	194, 1163, 1474, 1640, 1822
BstMBI	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 518
BstNI	CCWGG	6 cut(s)	249, 321, 366, 405, 420, 573
BstNSI	RCATGY	2 cut(s)	1033, 1129
BstSCI	CCNGG	7 cut(s)	247, 319, 364, 403, 418, 571, 723
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	1705
BstV1I	GCAGC	2 cut(s)	184, 1222
BstX2I	RGATCY	3 cut(s)	145, 1438, 1677
BstYI	RGATCY	3 cut(s)	145, 1438, 1677
Bsu36I	CCTNAGG	1 cut(s)	1485
BsuRI	GGCC	4 cut(s)	265, 402, 409, 1199
BtsCI	GGATG	4 cut(s)	1300, 1393, 1500, 1632
BtsIMutI	CAGTG	3 cut(s)	1313, 1513, 1840
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	771
CfoI	GCGC	2 cut(s)	723, 1705
Cfr13I	GGNCC	5 cut(s)	22, 287, 401, 407, 623
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	4 cut(s)	1030, 1126, 1522, 1579
CviQI	GTAC	1 cut(s)	102
DpnI	GATC	6 cut(s)	147, 753, 1440, 1499, 1599, 1679
DpnII	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
Eam1104I	CTCTTC	7 cut(s)	759, 861, 1106, 1320, 1389, 1472, 1820
EarI	CTCTTC	7 cut(s)	759, 861, 1106, 1320, 1389, 1472, 1820
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	352, 430
Eco31I	GGTCTC	1 cut(s)	1474
Eco47I	GGWCC	3 cut(s)	22, 287, 623
Eco53kI	GAGCTC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	1794
Eco81I	CCTNAGG	1 cut(s)	1485
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	350
EcoNI	CCTNNNNNAGG	2 cut(s)	306, 570
EcoRII	CCWGG	6 cut(s)	247, 319, 364, 403, 418, 571
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	2 cut(s)	712, 1063
EcoT38I	GRGCYC	2 cut(s)	352, 430
ErhI	CCWWGG	1 cut(s)	543
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	4 cut(s)	1033, 1129, 1525, 1582
FaqI	GGGAC	2 cut(s)	1532, 1538
FatI	CATG	4 cut(s)	1029, 1125, 1521, 1578
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	1130
Fnu4HI	GCNGC	2 cut(s)	173, 1236
FokI	GGATG	4 cut(s)	1307, 1400, 1507, 1639
FriOI	GRGCYC	2 cut(s)	352, 430
Fsp4HI	GCNGC	2 cut(s)	173, 1236
FspBI	CTAG	6 cut(s)	99, 345, 656, 911, 1139, 1650
GlaI	GCGC	2 cut(s)	722, 1704
GluI	GCNGC	2 cut(s)	173, 1236
GsaI	CCCAGC	2 cut(s)	748, 826
GsuI	CTGGAG	5 cut(s)	270, 555, 759, 816, 1181
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	4 cut(s)	265, 402, 409, 1199
HapII	CCGG	1 cut(s)	724
HhaI	GCGC	2 cut(s)	723, 1705
Hin1II	CATG	4 cut(s)	1033, 1129, 1525, 1582
Hin6I	GCGC	2 cut(s)	721, 1703
HinP1I	GCGC	2 cut(s)	721, 1703
HindIII	AAGCTT	1 cut(s)	679
HinfI	GANTC	7 cut(s)	121, 152, 576, 652, 812, 1639, 1830
HpaII	CCGG	1 cut(s)	724
Hpy166II	GTNNAC	6 cut(s)	165, 290, 326, 873, 1131, 1696
Hpy188I	TCNGA	7 cut(s)	126, 733, 859, 948, 1573, 1793, 1822
Hpy188III	TCNNGA	7 cut(s)	149, 656, 1108, 1442, 1643, 1683, 1715
Hpy8I	GTNNAC	6 cut(s)	165, 290, 326, 873, 1131, 1696
HpyAV	CCTTC	3 cut(s)	267, 1082, 1177
HpyCH4III	ACNGT	5 cut(s)	475, 877, 1135, 1146, 1845
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 518
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	1033, 1129, 1525, 1582
HspAI	GCGC	2 cut(s)	721, 1703
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
LguI	GCTCTTC	2 cut(s)	759, 1106
LmnI	GCTCC	8 cut(s)	250, 316, 355, 433, 517, 778, 797, 1546
Lsp1109I	GCAGC	2 cut(s)	184, 1222
LweI	GCATC	5 cut(s)	1048, 1068, 1162, 1329, 1389
MaeI	CTAG	6 cut(s)	99, 345, 656, 911, 1139, 1650
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	1224, 1426, 1839
MalI	GATC	6 cut(s)	147, 753, 1440, 1499, 1599, 1679
MboI	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
MfeI	CAATTG	1 cut(s)	1239
MflI	RGATCY	3 cut(s)	145, 1438, 1677
MhlI	GDGCHC	6 cut(s)	247, 328, 352, 430, 802, 1578
MluCI	AATT	5 cut(s)	81, 629, 894, 1239, 1461
MlyI	GAGTC	3 cut(s)	115, 146, 1824
MmeI	TCCRAC	1 cut(s)	49
Mph1103I	ATGCAT	2 cut(s)	712, 1063
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	3 cut(s)	90, 189, 921
MslI	CAYNNNNRTG	1 cut(s)	1254
MspI	CCGG	1 cut(s)	724
MspR9I	CCNGG	7 cut(s)	249, 321, 366, 405, 420, 573, 725
MunI	CAATTG	1 cut(s)	1239
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	6 cut(s)	249, 321, 366, 405, 420, 573
MvnI	CGCG	1 cut(s)	1705
MwoI	GCNNNNNNNGC	2 cut(s)	434, 518
NciI	CCSGG	1 cut(s)	725
NdeII	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
NlaIII	CATG	4 cut(s)	1033, 1129, 1525, 1582
NsiI	ATGCAT	2 cut(s)	712, 1063
NspI	RCATGY	2 cut(s)	1033, 1129
PaqCI	CACCTGC	1 cut(s)	442
PasI	CCCWGGG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	265
PciI	ACATGT	1 cut(s)	1125
PciSI	GCTCTTC	2 cut(s)	759, 1106
PctI	GAATGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	576, 652, 812, 1639
PfoI	TCCNGGA	2 cut(s)	247, 571
PkrI	GCNGC	2 cut(s)	174, 1237
PleI	GAGTC	3 cut(s)	115, 146, 1824
PpsI	GAGTC	3 cut(s)	115, 146, 1824
PscI	ACATGT	1 cut(s)	1125
PsiI	TTATAA	2 cut(s)	717, 1334
Psp124BI	GAGCTC	1 cut(s)	352
Psp6I	CCWGG	6 cut(s)	247, 319, 364, 403, 418, 571
PspFI	CCCAGC	2 cut(s)	744, 822
PspGI	CCWGG	6 cut(s)	247, 319, 364, 403, 418, 571
PspPI	GGNCC	5 cut(s)	22, 287, 401, 407, 623
PsuI	RGATCY	3 cut(s)	145, 1438, 1677
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	1254
SacI	GAGCTC	1 cut(s)	352
SapI	GCTCTTC	2 cut(s)	759, 1106
SaqAI	TTAA	3 cut(s)	90, 189, 921
SatI	GCNGC	2 cut(s)	173, 1236
Sau3AI	GATC	6 cut(s)	145, 751, 1438, 1497, 1597, 1677
Sau96I	GGNCC	5 cut(s)	22, 287, 401, 407, 623
SchI	GAGTC	3 cut(s)	115, 146, 1824
ScrFI	CCNGG	7 cut(s)	249, 321, 366, 405, 420, 573, 725
SduI	GDGCHC	6 cut(s)	247, 328, 352, 430, 802, 1578
SfaNI	GCATC	5 cut(s)	1048, 1068, 1162, 1329, 1389
SinI	GGWCC	3 cut(s)	22, 287, 623
SmiMI	CAYNNNNRTG	1 cut(s)	1254
SmlI	CTYRAG	3 cut(s)	1013, 1106, 1681
SmoI	CTYRAG	3 cut(s)	1013, 1106, 1681
SpeI	ACTAGT	1 cut(s)	1649
Sse9I	AATT	5 cut(s)	81, 629, 894, 1239, 1461
SseBI	AGGCCT	1 cut(s)	265
SspMI	CTAG	6 cut(s)	99, 345, 656, 911, 1139, 1650
SstI	GAGCTC	1 cut(s)	352
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	7 cut(s)	247, 319, 364, 403, 418, 571, 723
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	5 cut(s)	475, 877, 1135, 1146, 1845
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	5 cut(s)	119, 1266, 1323, 1374, 1642
TasI	AATT	5 cut(s)	81, 629, 894, 1239, 1461
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	576, 652, 812, 1639
Tru1I	TTAA	3 cut(s)	90, 189, 921
Tru9I	TTAA	3 cut(s)	90, 189, 921
TscAI	CASTG	3 cut(s)	1320, 1513, 1840
TseI	GCWGC	2 cut(s)	172, 1235
TspDTI	ATGAA	4 cut(s)	777, 1004, 1404, 1595
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	3 cut(s)	1320, 1513, 1840
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	3 cut(s)	22, 287, 623
XagI	CCTNNNNNAGG	2 cut(s)	306, 570
XapI	RAATTY	1 cut(s)	894
XbaI	TCTAGA	1 cut(s)	655
XceI	RCATGY	2 cut(s)	1033, 1129
XmiI	GTMKAC	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	6 cut(s)	99, 345, 656, 911, 1139, 1650
Zsp2I	ATGCAT	2 cut(s)	712, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.