AT5G13720

(InterPro IPR016804), Uncharacterised protein family UPF0114 (InterPro IPR005134)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005158
Physical Location & Seq
Forward (+)
4427783 .. 4429295
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13720.1

Sequence Viewer

Length: 789 bp
ATGGCTCTCTCCTCGTTGATCTCAGCCACTCCGCTCTCCCTTTCGGTGCCGAGATATCTCGTGTTACCCACGCGCCGCCGTTTCCACTTGCCGTTAGCAACTCTTGACTCATCGCCTCCAGAGTCATCCGCATCATCATCGATTCCTACCTCGATTCCCGTCAACGGAAACACGTTACCTAGTTCTTACGGAACTCGCAAAGACGACAGCCCGTTTGCTCAGTTCTTTCGCTCCACCGAATCCAACGTTGAGAGGATAATATTTGATTTCCGGTTCCTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGGTGTGTCTACATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTTCAAAAGGCATCCATACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTAGCTGGGACTGTGATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTTCCACCGGAATCCGATCGTGCCCTTAGATCCTCTTCCCTCTTTGGTATGTTTGCAATGAAGGAGAGACCAAAATGGATGAAGATCAGCTCACTTGATGAGCTTAAAACCAAAGTGGGACATGTCATTGTTATGATTCTGCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCCACCGGTCTAGATTTGCTTAGTTATTCCGTTTGCATCTTCTTGTCCTCTGCTTCTCTGTATATCCTCCATAATCTCCACAAAGGAGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

262

Amino Acids

28.91

Weight (kDa)

9.03

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 87 - 225 8.4e-35 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 2 cut(s) 342, 366
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 32, 76, 129
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 1 cut(s) 400
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 164
AflIII ACRYGT 2 cut(s) 171, 634
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 1 cut(s) 384
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 4 cut(s) 428, 446, 603, 616
AluI AGCT 4 cut(s) 428, 446, 603, 616
Alw26I GTCTC 2 cut(s) 574, 776
AlwI GGATC 1 cut(s) 537
Aor51HI AGCGCT 1 cut(s) 282
AoxI GGCC 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 665
AspLEI GCGC 2 cut(s) 75, 283
BaeGI GKGCMC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BauI CACGAG 1 cut(s) 59
BccI CCATC 1 cut(s) 676
BceAI ACGGC 2 cut(s) 63, 76
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BcoDI GTCTC 2 cut(s) 574, 776
BfaI CTAG 6 cut(s) 180, 278, 419, 443, 656, 704
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 48, 275
BmsI GCATC 3 cut(s) 140, 399, 738
BpmI CTGGAG 1 cut(s) 102
Bsa29I ATCGAT 2 cut(s) 140, 432
BsaBI GATNNNNATC 2 cut(s) 438, 596
BsaI GGTCTC 1 cut(s) 574
BsaWI WCCGGW 3 cut(s) 270, 520, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 2 cut(s) 398, 698
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 2 cut(s) 438, 596
BseCI ATCGAT 2 cut(s) 140, 432
BseGI GGATG 3 cut(s) 125, 390, 597
BseJI GATNNNNATC 2 cut(s) 438, 596
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 36, 233
BseNI ACTGG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 538
BseYI CCCAGC 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 532
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 698
BshVI ATCGAT 2 cut(s) 140, 432
BsiEI CGRYCG 1 cut(s) 532
BsiSI CCGG 4 cut(s) 271, 399, 521, 699
BslFI GGGAC 2 cut(s) 463, 645
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 574, 776
BsmFI GGGAC 2 cut(s) 463, 645
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 4 cut(s) 18, 529, 542, 597
BspACI CCGC 3 cut(s) 32, 76, 129
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 2 cut(s) 35, 232
BspDI ATCGAT 2 cut(s) 140, 432
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 48, 275
BspPI GGATC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 574
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 2 cut(s) 398, 698
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 2 cut(s) 398, 698
BssMI GATC 4 cut(s) 18, 529, 542, 597
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 380, 454
Bst6I CTCTTC 2 cut(s) 494, 553
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 22, 219, 539, 713
BstF5I GGATG 3 cut(s) 125, 390, 597
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 2 cut(s) 75, 283
BstKTI GATC 4 cut(s) 21, 532, 545, 600
BstMAI GTCTC 2 cut(s) 574, 776
BstMBI GATC 4 cut(s) 18, 529, 542, 597
BstMCI CGRYCG 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 638
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
Bsu15I ATCGAT 2 cut(s) 140, 432
BsuRI GGCC 1 cut(s) 402
BsuTUI ATCGAT 2 cut(s) 140, 432
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 125, 390, 597
Cac8I GCNNGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 508
CfoI GCGC 2 cut(s) 75, 283
Cfr10I RCCGGY 2 cut(s) 398, 698
ClaI ATCGAT 2 cut(s) 140, 432
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 3 cut(s) 509, 635, 786
CviJI RGCY 9 cut(s) 5, 26, 210, 308, 402, 428, 446, 603, 616
CviKI_1 RGCY 9 cut(s) 5, 26, 210, 308, 402, 428, 446, 603, 616
DdeI CTNAG 4 cut(s) 22, 219, 539, 713
DpnI GATC 4 cut(s) 20, 531, 544, 599
DpnII GATC 4 cut(s) 18, 529, 542, 597
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 494, 553
EarI CTCTTC 2 cut(s) 494, 553
Eco31I GGTCTC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 56
Eco47III AGCGCT 1 cut(s) 282
EcoRV GATATC 1 cut(s) 56
FaeI CATG 3 cut(s) 512, 638, 789
FaqI GGGAC 2 cut(s) 463, 645
FatI CATG 3 cut(s) 508, 634, 785
FblI GTMKAC 2 cut(s) 342, 366
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 3 cut(s) 112, 377, 604
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 6 cut(s) 180, 278, 419, 443, 656, 704
GlaI GCGC 2 cut(s) 74, 282
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 402
HapII CCGG 4 cut(s) 271, 399, 521, 699
HhaI GCGC 2 cut(s) 75, 283
Hin1II CATG 3 cut(s) 512, 638, 789
Hin6I GCGC 2 cut(s) 73, 281
HinP1I GCGC 2 cut(s) 73, 281
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 8 cut(s) 107, 122, 142, 154, 239, 486, 524, 649
HpaII CCGG 4 cut(s) 271, 399, 521, 699
Hpy166II GTNNAC 3 cut(s) 163, 343, 367
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 5 cut(s) 104, 119, 509, 670, 704
Hpy8I GTNNAC 3 cut(s) 163, 343, 367
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 380, 454
HpyCH4IV ACGT 2 cut(s) 173, 246
HpyCH4V TGCA 2 cut(s) 569, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 22, 219, 539, 713
HpySE526I ACGT 2 cut(s) 173, 246
Hsp92II CATG 3 cut(s) 512, 638, 789
HspAI GCGC 2 cut(s) 73, 281
Kzo9I GATC 4 cut(s) 18, 529, 542, 597
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 9 cut(s) 132, 284, 290, 294, 355, 412, 432, 534, 712
LweI GCATC 3 cut(s) 140, 399, 738
MaeI CTAG 6 cut(s) 180, 278, 419, 443, 656, 704
MaeII ACGT 2 cut(s) 173, 246
MaeIII GTNAC 4 cut(s) 63, 174, 497, 685
MalI GATC 4 cut(s) 20, 531, 544, 599
MbiI CCGCTC 1 cut(s) 34
MboI GATC 4 cut(s) 18, 529, 542, 597
MboII GAAGA 5 cut(s) 481, 540, 607, 673, 724
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 538
MlyI GAGTC 3 cut(s) 101, 131, 480
MmeI TCCRAC 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 2 cut(s) 461, 618
MslI CAYNNNNRTG 1 cut(s) 644
MspI CCGG 4 cut(s) 271, 399, 521, 699
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 4 cut(s) 18, 529, 542, 597
NlaIII CATG 3 cut(s) 512, 638, 789
NlaIV GGNNCC 2 cut(s) 48, 275
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 638
PagI TCATGA 1 cut(s) 508
PciI ACATGT 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 5 cut(s) 142, 154, 239, 524, 649
PinAI ACCGGT 1 cut(s) 698
PkrI GCNGC 1 cut(s) 77
Ple19I CGATCG 1 cut(s) 532
PleI GAGTC 3 cut(s) 101, 130, 480
PpsI GAGTC 3 cut(s) 101, 130, 480
PscI ACATGT 1 cut(s) 634
Psp1406I AACGTT 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 48, 275
PsuI RGATCY 1 cut(s) 542
PvuI CGATCG 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 2 cut(s) 461, 618
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 4 cut(s) 18, 529, 542, 597
SchI GAGTC 3 cut(s) 101, 131, 480
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 152, 176, 181, 249, 301, 430, 448, 605, 618
SfaNI GCATC 3 cut(s) 140, 399, 738
SmiMI CAYNNNNRTG 1 cut(s) 644
SsiI CCGC 3 cut(s) 32, 76, 129
SspI AATATT 2 cut(s) 261, 465
SspMI CTAG 6 cut(s) 180, 278, 419, 443, 656, 704
TaaI ACNGT 2 cut(s) 380, 454
TaiI ACGT 2 cut(s) 176, 249
TaqI TCGA 5 cut(s) 140, 152, 423, 432, 669
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 5 cut(s) 142, 154, 239, 524, 649
Tru1I TTAA 2 cut(s) 461, 618
Tru9I TTAA 2 cut(s) 461, 618
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 481, 587, 608
TspGWI ACGGA 3 cut(s) 180, 204, 712
XbaI TCTAGA 1 cut(s) 703
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 2 cut(s) 342, 366
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 6 cut(s) 180, 278, 419, 443, 656, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.