FvH4_7g01620

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005158
Physical Location & Seq
Forward (+)
2020497 .. 2023204
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01620.t1

Sequence Viewer

Length: 834 bp
ATGGCTCTCTTCACTTCCATCTCCTCCTCCCCCTTCTCCGCAGCGGCGCCGATCGGCCGCTACCCTCTCAACACCTTCAAGCGCTTCACTCATCCCATCATTGTTTCTTCTCTGACCTCCCCATCATCCCCGGAATCAAAATCAGCATCAGCTCCAAGTCAAACAGTAGCTTCCTCCACTGAAACTTCGGCAAATGCTTATCCTGCTTCCTCCAGACCCCCCGAACCGAGCTTCAACTACGCTTCTGCCAACGGTAGCCTGTTTTCTCGGTTTGCCAAGTCTGCCGAGTCTTCCATTGAAAGGACAATATTTGACTTCCGATTTTTGGCGCTACTGGCTGTTGGAGGTTCATTGGCTGGTTCACTATTGTGCTTCCTCAATGGATGTGTTTATGTAGTAGATGCCTATAGAGTTTACTGGGGCAGTTGTGTCAAAGGGCATCACACTGGACTAATGGTTCTACGACTAGTTGAAGCAATTGATGTTTATCTTGCTGGGACCGTCATGTTGATATTTGGTATGGGACTGTATGGATTATTTATCAGTAATGTGCCTACTGATGTGCCTTCTAGTGCTGATCGTGCTTTGAAGGGATCTTCTTTGTTTGGAATGTTTGCTTTGAAGGAGAGGCCTAAGTGGATGAAAATTAGCTCACTTGATGAATTGAAGACGAAAGTGGGACATGTTATCGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAAATGGTGCAAATAACCACTGGTTTGGATCTACTGAGCTATTCTGTTTGCATTTTTCTATCTTCTGCTTCTTTGTACATCCTTCATAATCTACACAAAGAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

278

Amino Acids

29.94

Weight (kDa)

9.25

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 103 - 241 1.3e-33 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 3 cut(s) 39, 44, 58
AclWI GGATC 2 cut(s) 601, 762
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 803
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 300, 325
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 7 cut(s) 79, 235, 299, 473, 589, 622, 667
AhlI ACTAGT 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 367
AloI GAACNNNNNNTCC 2 cut(s) 441, 473
AluBI AGCT 5 cut(s) 152, 170, 231, 651, 765
AluI AGCT 5 cut(s) 152, 170, 231, 651, 765
AlwI GGATC 2 cut(s) 601, 762
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 2 cut(s) 55, 629
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 3 cut(s) 49, 84, 331
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 282, 674
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 26, 104, 130
BcnI CCSGG 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 2 cut(s) 467, 570
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 3 cut(s) 50, 85, 332
BisI GCNGC 3 cut(s) 42, 45, 58
BlsI GCNGC 3 cut(s) 43, 46, 59
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 48, 499
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 3 cut(s) 155, 391, 448
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 282, 674
BpmI CTGGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 325
Bse1I ACTGG 4 cut(s) 339, 422, 451, 751
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 5 cut(s) 91, 125, 389, 645, 804
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 300, 325
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 4 cut(s) 339, 422, 451, 751
BseRI GAGGAG 3 cut(s) 13, 16, 736
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 494
Bsh1285I CGRYCG 2 cut(s) 54, 58
BshFI GGCC 2 cut(s) 57, 631
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 2 cut(s) 54, 58
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 3 cut(s) 511, 537, 693
BslI CCNNNNNNNGG 2 cut(s) 300, 325
BsmFI GGGAC 3 cut(s) 511, 537, 693
BsnI GGCC 2 cut(s) 57, 631
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 4 cut(s) 51, 577, 593, 754
BspACI CCGC 3 cut(s) 39, 44, 58
BspANI GGCC 2 cut(s) 57, 631
BspCNI CTCAG 1 cut(s) 753
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 48, 499
BspPI GGATC 2 cut(s) 601, 762
BspT107I GGYRCC 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 4 cut(s) 339, 422, 451, 751
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 51, 577, 593, 754
BssNI GRCGYC 1 cut(s) 47
Bst4CI ACNGT 4 cut(s) 166, 254, 502, 528
Bst6I CTCTTC 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 801
BstDEI CTNAG 2 cut(s) 633, 761
BstF5I GGATG 5 cut(s) 91, 125, 389, 645, 804
BstH2I RGCGCY 3 cut(s) 50, 85, 332
BstHHI GCGC 3 cut(s) 49, 84, 331
BstKTI GATC 4 cut(s) 54, 580, 596, 757
BstMBI GATC 4 cut(s) 51, 577, 593, 754
BstMCI CGRYCG 2 cut(s) 54, 58
BstMWI GCNNNNNNNGC 4 cut(s) 203, 281, 335, 581
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 2 cut(s) 282, 674
BstX2I RGATCY 2 cut(s) 593, 754
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 2 cut(s) 593, 754
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 57, 631
BtsCI GGATG 5 cut(s) 91, 125, 389, 645, 804
BtsIMutI CAGTG 3 cut(s) 177, 444, 744
CciI TCATGA 1 cut(s) 693
CfoI GCGC 3 cut(s) 49, 84, 331
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 802
CviAII CATG 3 cut(s) 505, 683, 694
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 2 cut(s) 633, 761
DinI GGCGCC 1 cut(s) 48
DpnI GATC 4 cut(s) 53, 579, 595, 756
DpnII GATC 4 cut(s) 51, 577, 593, 754
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 498
Eco47III AGCGCT 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 55
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FaeI CATG 3 cut(s) 508, 686, 697
FaiI YATR 8 cut(s) 393, 408, 506, 521, 531, 684, 695, 813
FaqI GGGAC 3 cut(s) 511, 537, 693
FatI CATG 3 cut(s) 504, 682, 693
Fnu4HI GCNGC 3 cut(s) 42, 45, 58
FokI GGATG 5 cut(s) 78, 112, 396, 652, 791
Fsp4HI GCNGC 3 cut(s) 42, 45, 58
FspBI CTAG 2 cut(s) 467, 570
GlaI GCGC 3 cut(s) 48, 83, 330
GluI GCNGC 3 cut(s) 42, 45, 58
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 3 cut(s) 50, 85, 332
HaeIII GGCC 2 cut(s) 57, 631
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 49, 84, 331
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 508, 686, 697
Hin6I GCGC 3 cut(s) 47, 82, 329
HinP1I GCGC 3 cut(s) 47, 82, 329
HinfI GANTC 3 cut(s) 134, 287, 697
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 362, 415
Hpy188I TCNGA 2 cut(s) 114, 320
Hpy188III TCNNGA 2 cut(s) 213, 694
Hpy8I GTNNAC 2 cut(s) 362, 415
HpyAV CCTTC 7 cut(s) 43, 85, 576, 583, 616, 818, 821
HpyCH4III ACNGT 4 cut(s) 166, 254, 502, 528
HpyCH4V TGCA 2 cut(s) 736, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 281, 335, 581
HpyF3I CTNAG 2 cut(s) 633, 761
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 508, 686, 697
HspAI GCGC 3 cut(s) 47, 82, 329
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 51, 577, 593, 754
LmnI GCTCC 2 cut(s) 157, 723
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 3 cut(s) 155, 391, 448
MaeI CTAG 2 cut(s) 467, 570
MalI GATC 4 cut(s) 53, 579, 595, 756
MboI GATC 4 cut(s) 51, 577, 593, 754
MboII GAAGA 6 cut(s) 99, 282, 588, 679, 692, 780
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 2 cut(s) 593, 754
MluCI AATT 3 cut(s) 477, 645, 662
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 367
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 477
MwoI GCNNNNNNNGC 4 cut(s) 203, 281, 335, 581
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 51, 577, 593, 754
NlaIII CATG 3 cut(s) 508, 686, 697
NlaIV GGNNCC 2 cut(s) 48, 499
NmeAIII GCCGAG 1 cut(s) 310
NspI RCATGY 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 367
PagI TCATGA 1 cut(s) 693
PceI AGGCCT 1 cut(s) 631
PciI ACATGT 1 cut(s) 682
PfeI GAWTC 2 cut(s) 134, 697
PkrI GCNGC 3 cut(s) 43, 46, 59
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 48, 499
PspPI GGNCC 1 cut(s) 498
PsuI RGATCY 2 cut(s) 593, 754
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 367
SatI GCNGC 3 cut(s) 42, 45, 58
Sau3AI GATC 4 cut(s) 51, 577, 593, 754
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 131
SetI ASST 8 cut(s) 77, 119, 154, 172, 233, 349, 653, 767
SfaNI GCATC 3 cut(s) 155, 391, 448
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 48
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 3 cut(s) 477, 645, 662
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 3 cut(s) 39, 44, 58
SspDI GGCGCC 1 cut(s) 46
SspI AATATT 1 cut(s) 309
SspMI CTAG 2 cut(s) 467, 570
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 166, 254, 502, 528
TasI AATT 3 cut(s) 477, 645, 662
TatI WGTACW 1 cut(s) 801
TauI GCSGC 2 cut(s) 47, 60
TfiI GAWTC 2 cut(s) 134, 697
TscAI CASTG 3 cut(s) 184, 451, 751
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 339, 656, 675, 800
TspRI CASTG 3 cut(s) 184, 451, 751
VpaK11BI GGWCC 1 cut(s) 498
XceI RCATGY 1 cut(s) 686
XspI CTAG 2 cut(s) 467, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.