Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Forward (+)

5531198 .. 5538091

Gene Structure 6894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG027600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTCTCTTCACTTCCATCTCCGCCTCCCCATTCTTCGTCGTGTTGCCGATCGGCCGCTGCCCTTTAAACACCTTCAAGCGCTTCACTCATCCCATCATTGCTTCTTCTCTCAGCTCTCCATCTTCCTCGGAATCAAAATCATCATCAGCTCCAAGTCAAACAGTAGTTTCCTCCACTGAAACCTCAGCAAATGCTTATCCTACTTCCTCCAGACCACCCGAGCCGAGCTTCAACTACGCCTTTGCCAACGGCAGCCTGTTTGCTCCCAAGTCTGCTGAGTCTTCCATTGAAAGACAGGGCGAACTCCCGACTTCTTGCACGCAAGTATATGAGGCACCTCAGCCTGATAAAAGGTTCTGCTCACAACAGGTACCCTACATAGTCCCCAACTTGGAAGCCAAAAGTCTCCACTATCCAGAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

142

Amino Acids

15.31

Weight (kDa)

6.72

Isoelectric Point (pI)

80.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	373
AccB1I	GGYRCC	2 cut(s)	337, 373
AciI	CCGC	2 cut(s)	24, 58
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	1 cut(s)	375
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	79, 235, 293
AluBI	AGCT	3 cut(s)	117, 152, 231
AluI	AGCT	3 cut(s)	117, 152, 231
Alw26I	GTCTC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	60, 255
Asp718I	GGTACC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	337, 373
BbsI	GAAGAC	1 cut(s)	276
BbvCI	CCTCAGC	2 cut(s)	187, 342
BbvI	GCAGC	2 cut(s)	47, 267
BccI	CCATC	3 cut(s)	26, 104, 130
BceAI	ACGGC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	3 cut(s)	58, 61, 256
BlsI	GCNGC	3 cut(s)	59, 62, 257
BmeT110I	CYCGRG	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	339, 375
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	187, 342
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	127, 201, 270, 356
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	47, 267
Bsh1285I	CGRYCG	2 cut(s)	54, 58
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	2 cut(s)	337, 373
BsiEI	CGRYCG	2 cut(s)	54, 58
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	24, 58
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	4 cut(s)	126, 200, 271, 355
BspLI	GGNNCC	2 cut(s)	339, 375
BspT107I	GGYRCC	2 cut(s)	337, 373
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	4 cut(s)	113, 187, 279, 342
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	2 cut(s)	54, 58
BstV1I	GCAGC	2 cut(s)	47, 267
BstV2I	GAAGAC	1 cut(s)	276
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	374
CviJI	RGCY	9 cut(s)	5, 57, 117, 152, 226, 231, 258, 346, 401
CviKI_1	RGCY	9 cut(s)	5, 57, 117, 152, 226, 231, 258, 346, 401
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	113, 187, 279, 342
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	221
FaiI	YATR	3 cut(s)	331, 333, 383
FaqI	GGGAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	58, 61, 256
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	58, 61, 256
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	58, 61, 256
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	134, 281
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	213, 310, 419
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	321
HpyF3I	CTNAG	4 cut(s)	113, 187, 279, 342
HspAI	GCGC	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	157, 271
LpnPI	CCDG	5 cut(s)	226, 272, 284, 356, 360
Lsp1109I	GCAGC	2 cut(s)	47, 267
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	28, 99, 117, 276
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	37, 139, 184, 196, 220, 328, 351
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	60
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	339, 375
NmeAIII	GCCGAG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	59, 62, 257
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	339, 375
PvuI	CGATCG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	58, 61, 256
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	290
SetI	ASST	9 cut(s)	77, 119, 154, 188, 233, 343, 359, 375, 427
SsiI	CCGC	2 cut(s)	24, 58
TaaI	ACNGT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	60, 255
TspRI	CASTG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.