Rh1CG028500

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005158
Physical Location & Seq
Forward (+)
5726755 .. 5729179
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG028500.1

Sequence Viewer

Length: 804 bp
ATGGCACAGAAAAGTCTCCAGCTTAGCTCCTTCCAACCAAAAAATCTCCCCCATCTCTCTAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACAATGGCTCTCTTCACTTCCATCTCCGCCTCCCCCTTCTCCGTCGCGTCGCCGATCGGCCGCTGCAATTTAAACACCTTCAAGCGCTTCACTCATCCCATCATTGCTTCTTCTCTCAGCTCCCCATCTTCCCCGGAATCAAAATCATCATCAGCTCCAAGTCAAACAGTTGTTTCCTCCACCGACACCTCGGCAAATGCTTTTCCCGCCTCCTCCAGACCGCCCGAGCCGAGCTTCAACTACGCCCTTGCCAACGGCAGCCTGTTTGCTCGGTTTGCCAAGTCTGCTGAGTCTTCCATTGAAAGAACAATATTTGACTTCCGATTTTTGGCGCTACTGGCTGTTGGAGATGTTTATCTTGCTGGGACTGTCATGTTAATATTTGGTATGGGATTGTATGGATTATTTATCAGTAATGTGCCTAATGATGTGCCTTCCAGCGCTGATCGTGCTTTGAAGGGATCTTCTTTGTTTGGAATGTTTGCTTTGAAGGAGAGGCCTAAATGGATGAAAATTAGCTCACTTGATGAATTGAAGACGAAAGTGGGGCATGTTATTGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAGATGGTGCAGATAACCACTGGTTTGGATCTACTGAGCTATTCTGTCTGTATTTTTCTGTCTTCTGCTTCTTTGTACATCCTTCATAATCTACACAAGGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

267

Amino Acids

28.84

Weight (kDa)

9.66

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 143 - 231 1.4e-20 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 129, 163, 309, 323
AclWI GGATC 2 cut(s) 571, 732
AcoI YGGCCR 1 cut(s) 160
AfaI GTAC 1 cut(s) 773
AfeI AGCGCT 2 cut(s) 188, 544
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 6 cut(s) 184, 340, 404, 559, 592, 637
AluBI AGCT 7 cut(s) 22, 27, 222, 257, 336, 621, 735
AluI AGCT 7 cut(s) 22, 27, 222, 257, 336, 621, 735
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 571, 732
Ama87I CYCGRG 1 cut(s) 326
Aor51HI AGCGCT 2 cut(s) 188, 544
AoxI GGCC 2 cut(s) 160, 599
ApeKI GCWGC 2 cut(s) 165, 360
AspLEI GCGC 3 cut(s) 189, 436, 545
AsuC2I CCSGG 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 326
BbsI GAAGAC 3 cut(s) 387, 644, 750
BbvI GCAGC 2 cut(s) 152, 372
BccI CCATC 5 cut(s) 60, 131, 209, 235, 694
BceAI ACGGC 1 cut(s) 373
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 20
BfoI RGCGCY 3 cut(s) 190, 437, 546
BisI GCNGC 3 cut(s) 163, 166, 361
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 3 cut(s) 164, 167, 362
Bme1390I CCNGG 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 3 cut(s) 387, 644, 750
BpmI CTGGAG 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 234, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 444, 721
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 234, 291
BseGI GGATG 3 cut(s) 196, 615, 774
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 3 cut(s) 232, 381, 722
BseNI ACTGG 2 cut(s) 444, 721
BseRI GAGGAG 2 cut(s) 304, 706
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 152, 372
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 2 cut(s) 159, 163
BshFI GGCC 2 cut(s) 162, 601
BsiEI CGRYCG 2 cut(s) 159, 163
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 162, 601
BsoBI CYCGRG 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 4 cut(s) 156, 547, 563, 724
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 4 cut(s) 129, 163, 309, 323
BspANI GGCC 2 cut(s) 162, 601
BspCNI CTCAG 3 cut(s) 231, 382, 723
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 663
BspPI GGATC 2 cut(s) 571, 732
BsrDI GCAATG 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 771
BsrI ACTGG 2 cut(s) 444, 721
BssECI CCNNGG 2 cut(s) 234, 291
BssMI GATC 4 cut(s) 156, 547, 563, 724
Bst4CI ACNGT 2 cut(s) 271, 472
Bst6I CTCTTC 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 771
BstDEI CTNAG 4 cut(s) 23, 218, 390, 731
BstF5I GGATG 3 cut(s) 196, 615, 774
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 3 cut(s) 190, 437, 546
BstHHI GCGC 3 cut(s) 189, 436, 545
BstKTI GATC 4 cut(s) 159, 550, 566, 727
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 4 cut(s) 156, 547, 563, 724
BstMCI CGRYCG 2 cut(s) 159, 163
BstMWI GCNNNNNNNGC 5 cut(s) 308, 377, 386, 440, 551
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 234
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 152, 372
BstV2I GAAGAC 3 cut(s) 387, 644, 750
BstX2I RGATCY 2 cut(s) 563, 724
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 2 cut(s) 563, 724
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 162, 601
BtsCI GGATG 3 cut(s) 196, 615, 774
BtsIMutI CAGTG 1 cut(s) 714
CciI TCATGA 1 cut(s) 663
CfoI GCGC 3 cut(s) 189, 436, 545
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 772
CviAII CATG 3 cut(s) 475, 653, 664
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 4 cut(s) 23, 218, 390, 731
DpnI GATC 4 cut(s) 158, 549, 565, 726
DpnII GATC 4 cut(s) 156, 547, 563, 724
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 160
Eco147I AGGCCT 1 cut(s) 601
Eco47III AGCGCT 2 cut(s) 188, 544
Eco52I CGGCCG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 326
FaeI CATG 3 cut(s) 478, 656, 667
FaiI YATR 6 cut(s) 476, 491, 501, 654, 665, 783
FaqI GGGAC 1 cut(s) 481
FatI CATG 3 cut(s) 474, 652, 663
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 163, 166, 361
FokI GGATG 3 cut(s) 183, 622, 761
Fsp4HI GCNGC 3 cut(s) 163, 166, 361
GlaI GCGC 3 cut(s) 188, 435, 544
GluI GCNGC 3 cut(s) 163, 166, 361
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 3 cut(s) 190, 437, 546
HaeIII GGCC 2 cut(s) 162, 601
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 138
HhaI GCGC 3 cut(s) 189, 436, 545
Hin1II CATG 3 cut(s) 478, 656, 667
Hin6I GCGC 3 cut(s) 187, 434, 543
HinP1I GCGC 3 cut(s) 187, 434, 543
HinfI GANTC 3 cut(s) 239, 392, 667
HpaII CCGG 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 425
Hpy188III TCNNGA 2 cut(s) 318, 664
Hpy99I CGWCG 2 cut(s) 149, 154
HpyAV CCTTC 8 cut(s) 40, 148, 190, 546, 553, 586, 788, 791
HpyCH4III ACNGT 2 cut(s) 271, 472
HpyCH4V TGCA 2 cut(s) 168, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 377, 386, 440, 551
HpyF3I CTNAG 4 cut(s) 23, 218, 390, 731
Hsp92II CATG 3 cut(s) 478, 656, 667
HspAI GCGC 3 cut(s) 187, 434, 543
Kzo9I GATC 4 cut(s) 156, 547, 563, 724
LmnI GCTCC 4 cut(s) 32, 227, 262, 693
LpnPI CCDG 9 cut(s) 32, 249, 331, 377, 425, 450, 553, 659, 702
Lsp1109I GCAGC 2 cut(s) 152, 372
MalI GATC 4 cut(s) 158, 549, 565, 726
MboI GATC 4 cut(s) 156, 547, 563, 724
MboII GAAGA 8 cut(s) 106, 204, 222, 387, 558, 649, 662, 750
MflI RGATCY 2 cut(s) 563, 724
MluCI AATT 3 cut(s) 169, 615, 632
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 58, 427
MnlI CCTC 7 cut(s) 142, 289, 301, 322, 325, 591, 684
MseI TTAA 2 cut(s) 173, 479
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 308, 377, 386, 440, 551
NciI CCSGG 1 cut(s) 236
NdeII GATC 4 cut(s) 156, 547, 563, 724
NlaIII CATG 3 cut(s) 478, 656, 667
NmeAIII GCCGAG 2 cut(s) 272, 357
NspI RCATGY 1 cut(s) 656
PagI TCATGA 1 cut(s) 663
PceI AGGCCT 1 cut(s) 601
PfeI GAWTC 2 cut(s) 239, 667
PkrI GCNGC 3 cut(s) 164, 167, 362
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 464
PsuI RGATCY 2 cut(s) 563, 724
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
SaqAI TTAA 2 cut(s) 173, 479
SatI GCNGC 3 cut(s) 163, 166, 361
Sau3AI GATC 4 cut(s) 156, 547, 563, 724
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 236
SetI ASST 9 cut(s) 24, 29, 182, 224, 259, 293, 338, 623, 737
Sse9I AATT 3 cut(s) 169, 615, 632
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 4 cut(s) 129, 163, 309, 323
SspI AATATT 2 cut(s) 414, 483
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 271, 472
TasI AATT 3 cut(s) 169, 615, 632
TatI WGTACW 1 cut(s) 771
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 2 cut(s) 239, 667
Tru1I TTAA 2 cut(s) 173, 479
Tru9I TTAA 2 cut(s) 173, 479
TscAI CASTG 1 cut(s) 721
TseI GCWGC 2 cut(s) 165, 360
TspDTI ATGAA 3 cut(s) 626, 645, 770
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 721
XceI RCATGY 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.