Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Forward (+)

2121646 .. 2125491

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G021800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTCTCTTCACTTCCATCTCCACCTCCACCCTCTGCCTTTCCACCTCAATCCGCCACTGCGGGCCTTCAAGCAGCTCGAAGCACTTCTCTCATCCCATCATTGCTTCTTCTCTGAGCTCCCCAGCATCCCCAGATTCAAAATCAACAACCCCAAATCAAACCATACTCTCCTCCTCCAATGATACTTCTCCAAACCCTTACACCAGTGCGTCCTCTAGGCCCCCGGAACCACCTGGCTTCAACTACGCCCTGGCCAACGGCAACCCGTTTGTTCGGTTTGCCCGTTCTGCGGAGTCTTCAATTGAAAGGACAATATTTGACTTCCGATTTTTGGCACTCTTTGCTGTTGGAGGTTCCTTGGCTGGTTCGTTGTTGTGCTTTCTCAATGGTTGCGTTTATATTATGGATGCATATAAAGTTTACTGGACTAGTTGTGTCAAAGGGCATCACACTGGACATATGGTTCTACGACTAGTTGAAGCTATTGATGTTTACCTTGCTGGGACTGTCATGTTAATATTTGGTATGGGATTATATGGATTATTTATCAGTAATGTCCCTCATGATGTGCCTTCCAATAATGATCGTGCTCTTAAGGGCTCTTCTTTGTTTGGAATGTTTGCTCTGAAGGAGAGGCCAAAATGGATGAAAATTAGCTCACTCGATGAGCTCAAGACGAAAGTGGGACACGTAATTGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAGATGGTGCAGATAACTACTGGTTTGGATCTGTTGAGCTATTCTGTCTGTATTTTCCTGTCTTCTGCATCGCTGTACATCCTTCATAATCTACACAAGAAAGGCCTAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

284

Amino Acids

30.8

Weight (kDa)

9.22

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	55, 63, 293
AclWI	GGATC	1 cut(s)	771
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	2 cut(s)	292, 334
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	6 cut(s)	72, 141, 244, 303, 308, 482
AhlI	ACTAGT	2 cut(s)	431, 475
AjnI	CCWGG	2 cut(s)	235, 252
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	6 cut(s)	78, 120, 485, 660, 673, 774
AluI	AGCT	6 cut(s)	78, 120, 485, 660, 673, 774
Alw21I	GWGCWC	3 cut(s)	122, 595, 675
AlwI	GGATC	1 cut(s)	771
AoxI	GGCC	5 cut(s)	65, 221, 255, 638, 838
ApeKI	GCWGC	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	65, 222
AsuC2I	CCSGG	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	257
BanII	GRGCYC	3 cut(s)	122, 605, 675
BbsI	GAAGAC	2 cut(s)	291, 789
Bbv12I	GWGCWC	3 cut(s)	122, 595, 675
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	3 cut(s)	26, 107, 733
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	237, 254
BcnI	CCSGG	1 cut(s)	227
BcuI	ACTAGT	2 cut(s)	431, 475
BfaI	CTAG	3 cut(s)	219, 432, 476
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	227, 237, 254
BmgT120I	GGNCC	2 cut(s)	65, 222
BmiI	GGNNCC	3 cut(s)	224, 231, 358
BmrFI	CCNGG	3 cut(s)	227, 237, 254
BmsI	GCATC	4 cut(s)	137, 400, 457, 812
BpiI	GAAGAC	2 cut(s)	291, 789
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	225, 252, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 334
Bse1I	ACTGG	4 cut(s)	207, 431, 460, 760
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	237, 254
BseDI	CCNNGG	3 cut(s)	225, 252, 360
BseGI	GGATG	5 cut(s)	94, 128, 415, 654, 813
BseLI	CCNNNNNNNGG	2 cut(s)	292, 334
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	4 cut(s)	207, 431, 460, 760
BseRI	GAGGAG	3 cut(s)	163, 166, 745
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	2 cut(s)	124, 503
BsgI	GTGCAG	1 cut(s)	764
BshFI	GGCC	5 cut(s)	67, 223, 257, 640, 840
BsiHKAI	GWGCWC	3 cut(s)	122, 595, 675
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	3 cut(s)	520, 545, 702
BslI	CCNNNNNNNGG	2 cut(s)	292, 334
BsmFI	GGGAC	3 cut(s)	520, 545, 702
BsnI	GGCC	5 cut(s)	67, 223, 257, 640, 840
Bsp1286I	GDGCHC	4 cut(s)	122, 595, 605, 675
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	2 cut(s)	586, 763
BspACI	CCGC	3 cut(s)	55, 63, 293
BspANI	GGCC	5 cut(s)	67, 223, 257, 640, 840
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	2 cut(s)	565, 702
BspLI	GGNNCC	3 cut(s)	224, 231, 358
BspPI	GGATC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	4 cut(s)	207, 431, 460, 760
BssECI	CCNNGG	3 cut(s)	225, 252, 360
BssMI	GATC	2 cut(s)	586, 763
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	237, 254
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	2 cut(s)	14, 610
BstAFI	CTTAAG	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	810
BstBAI	YACGTR	1 cut(s)	694
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	5 cut(s)	94, 128, 415, 654, 813
BstKTI	GATC	2 cut(s)	589, 766
BstMBI	GATC	2 cut(s)	586, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 344
BstNI	CCWGG	2 cut(s)	237, 254
BstSCI	CCNGG	3 cut(s)	225, 235, 252
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	291, 789
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	5 cut(s)	67, 223, 257, 640, 840
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	5 cut(s)	94, 128, 415, 654, 813
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	58, 214, 453
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	2 cut(s)	565, 702
Cfr13I	GGNCC	2 cut(s)	65, 222
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	811
CviAII	CATG	3 cut(s)	514, 566, 703
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	2 cut(s)	588, 765
DpnII	GATC	2 cut(s)	586, 763
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	14, 610
EarI	CTCTTC	2 cut(s)	14, 610
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	2 cut(s)	120, 673
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	840
Eco24I	GRGCYC	3 cut(s)	122, 605, 675
Eco53kI	GAGCTC	2 cut(s)	120, 673
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	2 cut(s)	120, 673
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	235, 252
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	3 cut(s)	122, 605, 675
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	3 cut(s)	517, 569, 706
FaqI	GGGAC	3 cut(s)	520, 545, 702
FatI	CATG	3 cut(s)	513, 565, 702
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	5 cut(s)	81, 115, 422, 661, 800
FriOI	GRGCYC	3 cut(s)	122, 605, 675
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	3 cut(s)	219, 432, 476
GluI	GCNGC	1 cut(s)	76
GsaI	CCCAGC	2 cut(s)	128, 507
HaeIII	GGCC	5 cut(s)	67, 223, 257, 640, 840
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	517, 569, 706
HinfI	GANTC	3 cut(s)	137, 296, 706
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	424, 496
Hpy188I	TCNGA	3 cut(s)	117, 329, 630
Hpy188III	TCNNGA	3 cut(s)	566, 676, 703
Hpy8I	GTNNAC	2 cut(s)	424, 496
HpyAV	CCTTC	4 cut(s)	78, 585, 625, 827
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	3 cut(s)	413, 745, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 344
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	3 cut(s)	517, 569, 706
Kzo9I	GATC	2 cut(s)	586, 763
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	2 cut(s)	125, 732
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	4 cut(s)	137, 400, 457, 812
MaeI	CTAG	3 cut(s)	219, 432, 476
MaeII	ACGT	1 cut(s)	693
MalI	GATC	2 cut(s)	588, 765
MboI	GATC	2 cut(s)	586, 763
MboII	GAAGA	5 cut(s)	102, 291, 597, 701, 789
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	4 cut(s)	122, 595, 605, 675
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	3 cut(s)	303, 654, 696
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	331
Mox20I	TGGCCA	1 cut(s)	257
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	2 cut(s)	518, 597
Msp20I	TGGCCA	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	227, 237, 254
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	237, 254
MwoI	GCNNNNNNNGC	2 cut(s)	290, 344
NciI	CCSGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	2 cut(s)	586, 763
NlaIII	CATG	3 cut(s)	517, 569, 706
NlaIV	GGNNCC	3 cut(s)	224, 231, 358
NsiI	ATGCAT	1 cut(s)	415
PagI	TCATGA	2 cut(s)	565, 702
PceI	AGGCCT	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	137, 706
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	694
Psp124BI	GAGCTC	2 cut(s)	122, 675
Psp6I	CCWGG	2 cut(s)	235, 252
PspFI	CCCAGC	2 cut(s)	124, 503
PspGI	CCWGG	2 cut(s)	235, 252
PspN4I	GGNNCC	3 cut(s)	224, 231, 358
PspPI	GGNCC	2 cut(s)	65, 222
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
SacI	GAGCTC	2 cut(s)	122, 675
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	2 cut(s)	518, 597
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	586, 763
Sau96I	GGNCC	2 cut(s)	65, 222
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	227, 237, 254
SduI	GDGCHC	4 cut(s)	122, 595, 605, 675
SfaNI	GCATC	4 cut(s)	137, 400, 457, 812
SmlI	CTYRAG	2 cut(s)	596, 674
SmoI	CTYRAG	2 cut(s)	596, 674
SpeI	ACTAGT	2 cut(s)	431, 475
Sse9I	AATT	3 cut(s)	303, 654, 696
SseBI	AGGCCT	1 cut(s)	840
SsiI	CCGC	3 cut(s)	55, 63, 293
SspI	AATATT	2 cut(s)	318, 522
SspMI	CTAG	3 cut(s)	219, 432, 476
SstI	GAGCTC	2 cut(s)	122, 675
StuI	AGGCCT	1 cut(s)	840
StyD4I	CCNGG	3 cut(s)	225, 235, 252
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	80, 666
TasI	AATT	3 cut(s)	303, 654, 696
TatI	WGTACW	1 cut(s)	810
TfiI	GAWTC	2 cut(s)	137, 706
Tru1I	TTAA	2 cut(s)	518, 597
Tru9I	TTAA	2 cut(s)	518, 597
TscAI	CASTG	3 cut(s)	65, 214, 460
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	665, 809
TspRI	CASTG	3 cut(s)	65, 214, 460
Vha464I	CTTAAG	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	3 cut(s)	219, 432, 476
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.