Rmu_sc0000654.1_g000020

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000654.1
OG0005158
Physical Location & Seq
Forward (+)
85758 .. 86174
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000654.1_g000020.1.cds

Sequence Viewer

Length: 417 bp
atggctctcttcacttccatctctgcctcccccttctctgtcgcatcaccgatcggccgctgccctttaaacaccttcaagcgcttcactcatcccatcattgcttcttctctcagctccccatcttcccctgaatcaaaatcatcatcagctccaagtcaaacagttgtttcctccactgaaacctcagcaaatgcttatcctgcttccttcagaccgcccgagccgagcttcaactacgcccttgccaacggccgcctgtttgctcggtttgccaagtctgctgagtcttccattgaaagagtagatgaatttaaccatttcactatgcttgcttcgttatgtgttgggaatgtttcgcagtttgttacttgtattcggttatttgtagtggatgtcttgggattagtcatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

138

Amino Acids

14.76

Weight (kDa)

8.59

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 58, 218, 256
AcoI YGGCCR 2 cut(s) 55, 253
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 196
AfeI AGCGCT 1 cut(s) 83
AgsI TTSAA 3 cut(s) 79, 235, 299
AluBI AGCT 3 cut(s) 117, 152, 231
AluI AGCT 3 cut(s) 117, 152, 231
Ama87I CYCGRG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 2 cut(s) 55, 253
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 311
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 47
BccI CCATC 3 cut(s) 26, 104, 130
BceAI ACGGC 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 3 cut(s) 58, 61, 256
BlsI GCNGC 3 cut(s) 59, 62, 257
BmeT110I CYCGRG 1 cut(s) 221
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 99
BseGI GGATG 2 cut(s) 91, 400
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 127, 201, 276
BseX3I CGGCCG 2 cut(s) 55, 253
BseXI GCAGC 1 cut(s) 47
Bsh1285I CGRYCG 3 cut(s) 54, 58, 256
BshFI GGCC 2 cut(s) 57, 255
BsiEI CGRYCG 3 cut(s) 54, 58, 256
BsiHKCI CYCGRG 1 cut(s) 221
BsnI GGCC 2 cut(s) 57, 255
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 3 cut(s) 58, 218, 256
BspANI GGCC 2 cut(s) 57, 255
BspCNI CTCAG 3 cut(s) 126, 200, 277
BsrDI GCAATG 1 cut(s) 99
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 113, 187, 285
BstF5I GGATG 2 cut(s) 91, 400
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 3 cut(s) 54, 58, 256
BstMWI GCNNNNNNNGC 3 cut(s) 203, 272, 281
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 282
BstZI CGGCCG 2 cut(s) 55, 253
BsuRI GGCC 2 cut(s) 57, 255
BtsCI GGATG 2 cut(s) 91, 400
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 84
CviJI RGCY 7 cut(s) 5, 57, 117, 152, 226, 231, 255
CviKI_1 RGCY 7 cut(s) 5, 57, 117, 152, 226, 231, 255
DdeI CTNAG 3 cut(s) 113, 187, 285
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 55, 253
EagI CGGCCG 2 cut(s) 55, 253
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EclXI CGGCCG 2 cut(s) 55, 253
Eco47III AGCGCT 1 cut(s) 83
Eco52I CGGCCG 2 cut(s) 55, 253
Eco57I CTGAAG 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 221
FaiI YATR 2 cut(s) 329, 343
Fnu4HI GCNGC 3 cut(s) 58, 61, 256
FokI GGATG 2 cut(s) 78, 407
Fsp4HI GCNGC 3 cut(s) 58, 61, 256
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 58, 61, 256
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 57, 255
HhaI GCGC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 2 cut(s) 134, 287
HphI GGTGA 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 43, 85, 220
HpyCH4III ACNGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 272, 281
HpyF3I CTNAG 3 cut(s) 113, 187, 285
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 122, 157
LpnPI CCDG 3 cut(s) 144, 216, 272
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 367
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 3 cut(s) 99, 117, 282
MluCI AATT 1 cut(s) 311
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 3 cut(s) 37, 184, 196
MseI TTAA 3 cut(s) 68, 315, 415
MspA1I CMGCKG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 203, 272, 281
NdeII GATC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 252
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 59, 62, 257
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PvuI CGATCG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 68, 315, 415
SatI GCNGC 3 cut(s) 58, 61, 256
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 296
SetI ASST 5 cut(s) 77, 119, 154, 188, 233
SfaNI GCATC 1 cut(s) 53
Sse9I AATT 1 cut(s) 311
SsiI CCGC 3 cut(s) 58, 218, 256
TaaI ACNGT 1 cut(s) 166
TasI AATT 1 cut(s) 311
TauI GCSGC 2 cut(s) 60, 258
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 68, 315, 415
Tru9I TTAA 3 cut(s) 68, 315, 415
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.