Rroxscaffold_4G00330150

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005158
Physical Location & Seq
Reverse (-)
63540008 .. 63542508
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330150.1

Sequence Viewer

Length: 381 bp
ATGGTTCTGCGACTAGTTGAAGCAATTGATGTTTATCTTGCTGGGACTGTCATGTTAATATTTGGTATGGGATTGTATGGATTATTTATCAGTAATGTGCCTAATGATGTGCCTTCCAACGCTGATCGTGCTTTGAAGGGATCTTCTTTGTTTGGAATGTTTGCTTTGAAGGAGAGGCCTAAATGGATGAAAATTAGCTCACTTGATGAATTGAAGACGAAAGTGGGGCATGTTATTGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAGATGGTGCAGATAACCACTGGTTTGGATCTACTGAGCTATTCTGTCTGTATTTTTCTATCTTCTGCTTCTTTGTACATCCTTCATAATCTACACAAGGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

9.1

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 1 - 90 8.4e-24 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 148, 309
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 4 cut(s) 20, 136, 169, 214
AhlI ACTAGT 1 cut(s) 13
AluBI AGCT 2 cut(s) 198, 312
AluI AGCT 2 cut(s) 198, 312
AlwI GGATC 2 cut(s) 148, 309
AoxI GGCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 1 cut(s) 271
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 33
BseGI GGATG 2 cut(s) 192, 351
BseJI GATNNNNATC 1 cut(s) 33
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 124, 140, 301
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 240
BspPI GGATC 2 cut(s) 148, 309
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 298
BssMI GATC 3 cut(s) 124, 140, 301
Bst4CI ACNGT 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 192, 351
BstKTI GATC 3 cut(s) 127, 143, 304
BstMBI GATC 3 cut(s) 124, 140, 301
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 140, 301
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 140, 301
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 192, 351
BtsIMutI CAGTG 1 cut(s) 291
CciI TCATGA 1 cut(s) 240
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 52, 230, 241
CviJI RGCY 3 cut(s) 178, 198, 312
CviKI_1 RGCY 3 cut(s) 178, 198, 312
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 308
DpnI GATC 3 cut(s) 126, 142, 303
DpnII GATC 3 cut(s) 124, 140, 301
Eco147I AGGCCT 1 cut(s) 178
FaeI CATG 3 cut(s) 55, 233, 244
FaiI YATR 6 cut(s) 53, 68, 78, 231, 242, 360
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 51, 229, 240
FokI GGATG 2 cut(s) 199, 338
FspBI CTAG 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 3 cut(s) 55, 233, 244
HinfI GANTC 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 5 cut(s) 123, 130, 163, 365, 368
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 3 cut(s) 55, 233, 244
Kzo9I GATC 3 cut(s) 124, 140, 301
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 3 cut(s) 27, 236, 279
MaeI CTAG 1 cut(s) 14
MalI GATC 3 cut(s) 126, 142, 303
MboI GATC 3 cut(s) 124, 140, 301
MboII GAAGA 4 cut(s) 135, 226, 239, 327
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 140, 301
MluCI AATT 3 cut(s) 24, 192, 209
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 2 cut(s) 168, 261
MseI TTAA 1 cut(s) 56
MunI CAATTG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 124, 140, 301
NlaIII CATG 3 cut(s) 55, 233, 244
NspI RCATGY 1 cut(s) 233
PagI TCATGA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 178
PfeI GAWTC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 140, 301
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 3 cut(s) 124, 140, 301
SetI ASST 2 cut(s) 200, 314
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 3 cut(s) 24, 192, 209
SseBI AGGCCT 1 cut(s) 178
SspI AATATT 1 cut(s) 60
SspMI CTAG 1 cut(s) 14
StuI AGGCCT 1 cut(s) 178
TaaI ACNGT 1 cut(s) 49
TasI AATT 3 cut(s) 24, 192, 209
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 203, 222, 347
TspRI CASTG 1 cut(s) 298
XceI RCATGY 1 cut(s) 233
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.