Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Reverse (-)

6825777 .. 6826205

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG042600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTCTCTTCACTTCCATCTCCGCCTCCCCATTCTCCGTCGCGTTGCCGATCGGCCGCTGCCCTTTAAACACCTTCAAGCGCTTCACTCATCCCATCATTGCTTCTTCTCTCAGCTCCCCATCTTCCCCGGAATCAAAATCATCATCAGCTCCAAGTCAAACAGTAGTTTCCTCCACTGAAACCTCAGCAAATGCTTATCCTACTTCCTCCAGACCGCCCGAGCCGAGCTTCAACTACGCCCTTGCCAACGGCAACCTGTTTGCTCGGTTTGCCAAGTCTGCTGAGTCTTCCATTGAAAGAGTACATGAGTTTAACCATTTCACTATGCTTGCTTCGTTATGTATTGGGAATGGTTCGCAGTTTGTTATTTTTGTTCAATTATTTGTAGTGGATGTCTTGGGATTAGTAAAGCAACTCAACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

142

Amino Acids

15.2

Weight (kDa)

8.74

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	24, 58, 218
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	79, 235, 299, 380
AluBI	AGCT	3 cut(s)	117, 152, 231
AluI	AGCT	3 cut(s)	117, 152, 231
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	3 cut(s)	26, 104, 130
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	2 cut(s)	58, 61
BlsI	GCNGC	2 cut(s)	59, 62
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	91, 400
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	127, 201, 276
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	2 cut(s)	54, 58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	2 cut(s)	54, 58
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	24, 58, 218
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	126, 200, 277
BspFNI	CGCG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	113, 187, 285
BstF5I	GGATG	2 cut(s)	91, 400
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	2 cut(s)	54, 58
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	425
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	91, 400
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	6 cut(s)	5, 57, 117, 152, 226, 231
CviKI_1	RGCY	6 cut(s)	5, 57, 117, 152, 226, 231
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	113, 187, 285
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	221
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	309, 329, 343, 427
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	58, 61
FokI	GGATG	2 cut(s)	78, 407
Fsp4HI	GCNGC	2 cut(s)	58, 61
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	58, 61
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	134, 287
HpaII	CCGG	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	3 cut(s)	113, 187, 285
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	122, 157
LpnPI	CCDG	3 cut(s)	144, 226, 272
Lsp1109I	GCAGC	1 cut(s)	47
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	3 cut(s)	99, 117, 282
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	4 cut(s)	37, 184, 196, 220
MseI	TTAA	2 cut(s)	68, 315
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	59, 62
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PvuI	CGATCG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	68, 315
SatI	GCNGC	2 cut(s)	58, 61
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	7 cut(s)	77, 119, 154, 188, 233, 261, 426
SfcI	CTRYAG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	3 cut(s)	24, 58, 218
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	68, 315
Tru9I	TTAA	2 cut(s)	68, 315
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.