Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002922.1

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Reverse (-)

14799 .. 16189

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002922.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgtctattgttgagcagacaatatttgacttccgatttttggcgctacttgctgttggaggctcattggctggttcactattgtgctttctcaatggttgtgtttatattgtagatgcctatagagtttattggggtagttgtgtcaaagggcatcacactggacaaatggttctgcgactagttgaagcaattgatgtttatcttgctgggactgtcatgttaatatttggtatgggattgtatggattatttatcagtaatgtgcctaatgatgtgccttccaacgctgatcgtgctttgaagggatcttctttgtttggaatgtttgctttgaaggagaggcctaaatggatgaaaattagctcacttgatgaattgaagacgaaagtggggcatgttattgtcatgattcttctggtaaagatgtttgagaggagcaagatggtgcagataaccactggtttggatctactgagctattctgtctgtatttttctatcttctgcttccttgtacatccttcataatctacacaaggaaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

8.67

Isoelectric Point (pI)

21.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	316, 477
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	188, 304, 337, 382
AhlI	ACTAGT	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	366, 480
AluI	AGCT	2 cut(s)	366, 480
AlwI	GGATC	2 cut(s)	316, 477
AoxI	GGCC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	389
BccI	CCATC	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	47
BmsI	GCATC	2 cut(s)	106, 163
BpiI	GAAGAC	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	166, 466
Bse8I	GATNNNNATC	1 cut(s)	201
BseGI	GGATG	2 cut(s)	360, 519
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	2 cut(s)	166, 466
BseRI	GAGGAG	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	292, 308, 469
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	408
BspPI	GGATC	2 cut(s)	316, 477
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	166, 466
BssMI	GATC	3 cut(s)	292, 308, 469
Bst4CI	ACNGT	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	360, 519
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	295, 311, 472
BstMBI	GATC	3 cut(s)	292, 308, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 296
BstNSI	RCATGY	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	308, 469
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	2 cut(s)	308, 469
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	360, 519
BtsIMutI	CAGTG	2 cut(s)	159, 459
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	3 cut(s)	220, 398, 409
CviJI	RGCY	5 cut(s)	63, 71, 346, 366, 480
CviKI_1	RGCY	5 cut(s)	63, 71, 346, 366, 480
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	3 cut(s)	294, 310, 471
DpnII	GATC	3 cut(s)	292, 308, 469
Eco147I	AGGCCT	1 cut(s)	346
FaeI	CATG	3 cut(s)	223, 401, 412
FaiI	YATR	8 cut(s)	108, 123, 221, 236, 246, 399, 410, 528
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	219, 397, 408
FokI	GGATG	2 cut(s)	367, 506
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	223, 401, 412
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	5 cut(s)	291, 298, 331, 533, 536
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 296
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	223, 401, 412
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	292, 308, 469
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	5 cut(s)	57, 147, 195, 404, 447
LweI	GCATC	2 cut(s)	106, 163
MaeI	CTAG	1 cut(s)	182
MalI	GATC	3 cut(s)	294, 310, 471
MboI	GATC	3 cut(s)	292, 308, 469
MboII	GAAGA	4 cut(s)	303, 394, 407, 495
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	2 cut(s)	308, 469
MluCI	AATT	3 cut(s)	192, 360, 377
MmeI	TCCRAC	2 cut(s)	37, 309
MnlI	CCTC	3 cut(s)	53, 336, 429
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	50, 296
NdeII	GATC	3 cut(s)	292, 308, 469
NlaIII	CATG	3 cut(s)	223, 401, 412
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	82
PagI	TCATGA	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	308, 469
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	292, 308, 469
SetI	ASST	2 cut(s)	368, 482
SfaNI	GCATC	2 cut(s)	106, 163
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	82
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	3 cut(s)	192, 360, 377
SseBI	AGGCCT	1 cut(s)	346
SspI	AATATT	2 cut(s)	24, 228
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	217
TasI	AATT	3 cut(s)	192, 360, 377
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	166, 466
TspDTI	ATGAA	3 cut(s)	371, 390, 515
TspRI	CASTG	2 cut(s)	166, 466
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.