Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Reverse (-)

23380198 .. 23382657

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACGACTTTTCAGTTTTCCCTCCGCCGTCCATGCAGCATCAGCCCAAAAGTCCCACGGCCCCGTAACACGCGTGAAGGCCACTTACATTCCCAAATTACCGTTACTACCCGCCAACTAAAGTCACAGAAAATTCTCGGCACTCCAACTAAAATCTCTCTCTCTCTCTCTCTCTCCATAATGGCTCTCTTCACTTCTATCTCCACCTCAACCCTCTCCATCTCGGCGGCAATCCGTCCCATCGGGCCGTCGAACAGCTCTAAGCGCTTCTCTCATTCCATCGCTGCTTCTTCTCTGAGCTCCCCACCGTCTCCGGAATCAAAATCAACGGCCCCAAATCAAACCGCAGTCTCCTCCTCCTCCGAAACTTCACCAGACCCTTTGAATGGTGCGTCGTCAAGACCCCCGGAGCCGGTGGGCTTCAATTACGCCCTTGCCAACGGCAACCCCTTTGTTCGGTTTACCCGTTCCGCTGAGTCTTCCATTGAAAGGACAATATTTGACTTCCGGTTTTTGGCACTATTTGCTGTTGGAGGTTCGTTGGCTGGTTCACTGTTGTGCTTTCTCAATGGTTGTGTTTATATAATGGATGCGTATAAAGTTTATTGGACTAGTTGTGTCAAAGGGAATCACACTGGACGTATGGTTCTCCGACTTGTTGAAGCTATTGATGTTTACCTTGCTGGGACTGTCATGTTAATATTTGGCATGGGACTTTACGGATTATTTATCAGTAATGTCCCTAATGATGTGCCTTCCATTGATGATCGCGCTCTAAAGGGATCTTCTTTGTTCGGGATGTTTGCTATGAAGGAGAGACCTAAATGGATGAAAATTAGCTCACTCGATGAACTGAAGACGAAAGTGGGGCATGTAATTGTCATGATTCTTCTGGTAAAGATGTTTGAGCGGAGCAAGATGGTGCAGATAACCACCGGTTTGGATCTATTGAGCTATTCTGTCTGTATTTTCCTGTCTTCTGCTTCTCTGTACGTCCTTCATAATCTACACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

339

Amino Acids

36.88

Weight (kDa)

9.86

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	910
AccII	CGCG	2 cut(s)	73, 771
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	6 cut(s)	25, 112, 227, 345, 471, 910
AclWI	GGATC	2 cut(s)	790, 951
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	875
AfaI	GTAC	1 cut(s)	992
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	5 cut(s)	386, 412, 456, 489, 514
AflIII	ACRYGT	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	935
AgsI	TTSAA	4 cut(s)	385, 424, 488, 662
AhlI	ACTAGT	1 cut(s)	611
AleI	CACNNNNGTG	1 cut(s)	556
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
AluBI	AGCT	5 cut(s)	258, 300, 665, 840, 954
AluI	AGCT	5 cut(s)	258, 300, 665, 840, 954
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	3 cut(s)	315, 355, 811
AlwI	GGATC	2 cut(s)	790, 951
Aor13HI	TCCGGA	1 cut(s)	313
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	4 cut(s)	59, 79, 245, 330
ApeKI	GCWGC	2 cut(s)	36, 284
ApoI	RAATTY	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	935
AspLEI	GCGC	2 cut(s)	267, 773
AspS9I	GGNCC	3 cut(s)	60, 245, 331
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbsI	GAAGAC	3 cut(s)	471, 863, 969
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	48, 271
BccI	CCATC	4 cut(s)	227, 248, 287, 913
BceAI	ACGGC	5 cut(s)	12, 74, 232, 345, 457
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	315, 355, 811
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	3 cut(s)	37, 228, 285
BlsI	GCNGC	3 cut(s)	38, 229, 286
Bme1390I	CCNGG	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	60, 245, 331
BmiI	GGNNCC	3 cut(s)	62, 333, 411
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	48, 580
BpiI	GAAGAC	3 cut(s)	471, 863, 969
BpuMI	CCSGG	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	2 cut(s)	56, 405
BsaWI	WCCGGW	3 cut(s)	313, 507, 935
Bsc4I	CCNNNNNNNGG	5 cut(s)	386, 412, 456, 489, 514
Bse118I	RCCGGY	2 cut(s)	412, 935
Bse1I	ACTGG	1 cut(s)	640
BseAI	TCCGGA	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	56, 405
BseGI	GGATG	3 cut(s)	595, 804, 834
BseLI	CCNNNNNNNGG	5 cut(s)	386, 412, 456, 489, 514
BseMII	CTCAG	2 cut(s)	287, 465
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	3 cut(s)	343, 346, 349
BseXI	GCAGC	2 cut(s)	48, 271
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	2 cut(s)	73, 771
BshFI	GGCC	4 cut(s)	61, 81, 247, 332
BshTI	ACCGGT	1 cut(s)	935
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	5 cut(s)	314, 407, 413, 508, 936
BslFI	GGGAC	5 cut(s)	38, 222, 700, 725, 726
BslI	CCNNNNNNNGG	5 cut(s)	386, 412, 456, 489, 514
BsmAI	GTCTC	3 cut(s)	315, 355, 811
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	5 cut(s)	38, 222, 700, 725, 726
BsnI	GGCC	4 cut(s)	61, 81, 247, 332
Bso31I	GGTCTC	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	766, 782, 943
BspACI	CCGC	6 cut(s)	25, 112, 227, 345, 471, 910
BspANI	GGCC	4 cut(s)	61, 81, 247, 332
BspCNI	CTCAG	2 cut(s)	288, 466
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	73, 771
BspHI	TCATGA	1 cut(s)	882
BspLI	GGNNCC	3 cut(s)	62, 333, 411
BspPI	GGATC	2 cut(s)	790, 951
BspTNI	GGTCTC	1 cut(s)	811
BsrBI	CCGCTC	1 cut(s)	910
BsrFI	RCCGGY	2 cut(s)	412, 935
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	2 cut(s)	412, 935
BssECI	CCNNGG	2 cut(s)	56, 405
BssMI	GATC	3 cut(s)	766, 782, 943
Bst4CI	ACNGT	4 cut(s)	103, 309, 555, 691
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	261, 296, 474
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	595, 804, 834
BstFNI	CGCG	2 cut(s)	73, 771
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	267, 773
BstKTI	GATC	3 cut(s)	769, 785, 946
BstMAI	GTCTC	3 cut(s)	315, 355, 811
BstMBI	GATC	3 cut(s)	766, 782, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 42, 264, 524
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	73, 771
BstV1I	GCAGC	2 cut(s)	48, 271
BstV2I	GAAGAC	3 cut(s)	471, 863, 969
BstX2I	RGATCY	2 cut(s)	782, 943
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	2 cut(s)	782, 943
BsuRI	GGCC	4 cut(s)	61, 81, 247, 332
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	595, 804, 834
BtsIMutI	CAGTG	2 cut(s)	551, 633
CciI	TCATGA	1 cut(s)	882
CfoI	GCGC	2 cut(s)	267, 773
Cfr10I	RCCGGY	2 cut(s)	412, 935
Cfr13I	GGNCC	3 cut(s)	60, 245, 331
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	991
CspAI	ACCGGT	1 cut(s)	935
CviAII	CATG	5 cut(s)	33, 694, 709, 872, 883
CviQI	GTAC	1 cut(s)	991
DdeI	CTNAG	3 cut(s)	261, 296, 474
DpnI	GATC	3 cut(s)	768, 784, 945
DpnII	GATC	3 cut(s)	766, 782, 943
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	811
Eco47III	AGCGCT	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	5 cut(s)	36, 697, 712, 875, 886
FaqI	GGGAC	5 cut(s)	38, 222, 700, 725, 726
FatI	CATG	5 cut(s)	32, 693, 708, 871, 882
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	37, 228, 285
FokI	GGATG	3 cut(s)	602, 811, 841
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	37, 228, 285
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	2 cut(s)	266, 772
GluI	GCNGC	3 cut(s)	37, 228, 285
GsaI	CCCAGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	61, 81, 247, 332
HapII	CCGG	5 cut(s)	314, 407, 413, 508, 936
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	267, 773
Hin1II	CATG	5 cut(s)	36, 697, 712, 875, 886
Hin6I	GCGC	2 cut(s)	265, 771
HinP1I	GCGC	2 cut(s)	265, 771
HinfI	GANTC	4 cut(s)	317, 476, 628, 886
HpaII	CCGG	5 cut(s)	314, 407, 413, 508, 936
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	3 cut(s)	462, 551, 676
Hpy188I	TCNGA	3 cut(s)	297, 364, 653
Hpy188III	TCNNGA	4 cut(s)	314, 399, 796, 883
Hpy8I	GTNNAC	3 cut(s)	462, 551, 676
Hpy99I	CGWCG	2 cut(s)	253, 397
HpyAV	CCTTC	4 cut(s)	71, 765, 805, 1007
HpyCH4III	ACNGT	4 cut(s)	103, 309, 555, 691
HpyCH4IV	ACGT	2 cut(s)	640, 993
HpyCH4V	TGCA	2 cut(s)	36, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 42, 264, 524
HpyF3I	CTNAG	3 cut(s)	261, 296, 474
HpySE526I	ACGT	2 cut(s)	640, 993
Hsp92II	CATG	5 cut(s)	36, 697, 712, 875, 886
HspAI	GCGC	2 cut(s)	265, 771
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	766, 782, 943
LmnI	GCTCC	3 cut(s)	305, 409, 912
Lsp1109I	GCAGC	2 cut(s)	48, 271
LweI	GCATC	2 cut(s)	48, 580
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	2 cut(s)	640, 993
MaeIII	GTNAC	3 cut(s)	65, 103, 123
MalI	GATC	3 cut(s)	768, 784, 945
MbiI	CCGCTC	1 cut(s)	910
MboI	GATC	3 cut(s)	766, 782, 943
MboII	GAAGA	7 cut(s)	181, 282, 471, 777, 868, 881, 969
MflI	RGATCY	2 cut(s)	782, 943
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	5 cut(s)	96, 132, 424, 834, 876
MluI	ACGCGT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	3 cut(s)	170, 511, 676
MnlI	CCTC	7 cut(s)	32, 217, 224, 364, 367, 370, 527
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	5 cut(s)	314, 407, 413, 508, 936
MspR9I	CCNGG	1 cut(s)	407
MvnI	CGCG	2 cut(s)	73, 771
MwoI	GCNNNNNNNGC	4 cut(s)	33, 42, 264, 524
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	766, 782, 943
NlaIII	CATG	5 cut(s)	36, 697, 712, 875, 886
NlaIV	GGNNCC	3 cut(s)	62, 333, 411
NmeAIII	GCCGAG	2 cut(s)	117, 203
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	875
OliI	CACNNNNGTG	1 cut(s)	556
PagI	TCATGA	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	317, 628, 886
PinAI	ACCGGT	1 cut(s)	935
PkrI	GCNGC	3 cut(s)	38, 229, 286
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	62, 333, 411
PspPI	GGNCC	3 cut(s)	60, 245, 331
PsuI	RGATCY	2 cut(s)	782, 943
RsaI	GTAC	1 cut(s)	992
RsaNI	GTAC	1 cut(s)	991
RseI	CAYNNNNRTG	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	3 cut(s)	37, 228, 285
Sau3AI	GATC	3 cut(s)	766, 782, 943
Sau96I	GGNCC	3 cut(s)	60, 245, 331
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	2 cut(s)	48, 580
SmiMI	CAYNNNNRTG	1 cut(s)	556
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	5 cut(s)	96, 132, 424, 834, 876
SsiI	CCGC	6 cut(s)	25, 112, 227, 345, 471, 910
SspI	AATATT	2 cut(s)	498, 702
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	4 cut(s)	103, 309, 555, 691
TaiI	ACGT	2 cut(s)	643, 996
TaqI	TCGA	2 cut(s)	251, 846
TasI	AATT	5 cut(s)	96, 132, 424, 834, 876
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	317, 628, 886
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	2 cut(s)	558, 640
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	2 cut(s)	36, 284
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	4 cut(s)	824, 845, 864, 989
TspGWI	ACGGA	2 cut(s)	224, 735
TspRI	CASTG	2 cut(s)	558, 640
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	1 cut(s)	875
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.