Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Forward (+)

1294506 .. 1296941

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTCGTTCATTAGCCCAAAAGTCCCACGCTCCCCTTCCACGCGCGAAGGCCACTTTCGCTCCCAAATTCCGTTACTACCCGCCATCCAAAGGCGCAAAAAAATTCTCAGCCCTCCAACCAAAATATCTCCATCCGGCAAACTCCTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTACCTCTACACAATGGCTCTCTTCACTTCGATCTCCTCCTCAACCCTCTGCCTCTCCGCCTCAATCCATCCCATCGGGCCGTCGAACACCTCTAAACGGTTCTCTCGTCCCATCGCTGCTTCTTCTCTGTGCTCCCCACCGTCTCCGGAATCAAAATCAACGGCCCCAAAACAAACCGTAGTCTCCTCCTCCACTGAAACTTCACCAAACCATTTTAATGGTGCGTCCTCTAGACCCCCCGAGCCGGCGGGCTTCAACTACGCCCTTGCCAACGGCAACCCCTTTGTCCGGTTTGCCCGTGCCGCTGAGTCTTCCATTGAAAGGACAATATTTGACTTCCGGTTTTTGGCACTGTTTGCTGTTGGAGGTTCGTTGGCTGGTTCGTTGTTGTGCTTTCTCAATGGTTGTGTTTATATAATGGATGCGTATAAAGTTTACTGGACTAGTTGTGTCAAAGGGTATCACACTGGACATATGGTTCTACGACTTGTTGAAGCTATCGATGTTTACCTTGCTGGGACTGTCATGCTAATATTTGGTATGGGACTGTATGGATTATTTATCAGTAATGTCCCTCATGACGTGCCTTCCATTGATGATCGTGCTCTTAAGGGCTCTTCTTTATTCGGAATGTTTGCTCTGAAGGAGAGGCCTAAATGGATGAAAATTTGCTCACTTGATGAACTGAAGACGAAGGTGGGACACGTCATTGTTATGATTCTTCTGGTTAAGATGTTTGAGAGGAGCAAGATGGTACAGATAACCACTGGTTTGGATCTGTTGAGTTATTCTGTCTGTATTTTCCTGTCTTCGGCTTCTTTGTACATCCTTCATAATCTGCACAAGGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

346

Amino Acids

37.68

Weight (kDa)

9.65

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	43, 45
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	4 cut(s)	81, 240, 431, 486
AclWI	GGATC	1 cut(s)	966
AcsI	RAATTY	3 cut(s)	66, 102, 849
AcuI	CTGAAG	2 cut(s)	845, 890
AfaI	GTAC	2 cut(s)	939, 1007
AfiI	CCNNNNNNNGG	7 cut(s)	90, 279, 427, 471, 504, 529, 994
AflII	CTTAAG	1 cut(s)	791
AflIII	ACRYGT	1 cut(s)	886
AgsI	TTSAA	3 cut(s)	439, 503, 677
AhlI	ACTAGT	1 cut(s)	626
AjiI	CACGTC	2 cut(s)	766, 889
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	1 cut(s)	680
AluI	AGCT	1 cut(s)	680
Alw21I	GWGCWC	2 cut(s)	317, 790
Alw26I	GTCTC	2 cut(s)	330, 370
AlwI	GGATC	1 cut(s)	966
Ama87I	CYCGRG	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	4 cut(s)	49, 260, 345, 833
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	3 cut(s)	66, 102, 849
AspLEI	GCGC	2 cut(s)	45, 96
AspS9I	GGNCC	2 cut(s)	260, 346
AsuHPI	GGTGA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	800
BbsI	GAAGAC	3 cut(s)	486, 878, 984
Bbv12I	GWGCWC	2 cut(s)	317, 790
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	6 cut(s)	92, 139, 258, 263, 302, 928
BceAI	ACGGC	3 cut(s)	247, 360, 472
BcoDI	GTCTC	2 cut(s)	330, 370
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	414, 627
BfrI	CTTAAG	1 cut(s)	791
BisI	GCNGC	2 cut(s)	300, 486
BlsI	GCNGC	2 cut(s)	301, 487
BmeT110I	CYCGRG	1 cut(s)	422
BmgBI	CACGTC	2 cut(s)	766, 889
BmgT120I	GGNCC	2 cut(s)	260, 346
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	1 cut(s)	595
BpiI	GAAGAC	3 cut(s)	486, 878, 984
Bsa29I	ATCGAT	1 cut(s)	684
BsaWI	WCCGGW	3 cut(s)	328, 471, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 279, 427, 471, 504, 529, 994
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	626, 655, 955
BseAI	TCCGGA	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	684
BseGI	GGATG	6 cut(s)	84, 131, 250, 610, 849, 1008
BseLI	CCNNNNNNNGG	7 cut(s)	90, 279, 427, 471, 504, 529, 994
BseMII	CTCAG	2 cut(s)	121, 480
BseNI	ACTGG	3 cut(s)	626, 655, 955
BseRI	GAGGAG	6 cut(s)	134, 208, 211, 358, 361, 940
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	698
BsgI	GTGCAG	1 cut(s)	1007
Bsh1236I	CGCG	2 cut(s)	43, 45
BshFI	GGCC	4 cut(s)	51, 262, 347, 835
BshVI	ATCGAT	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	317, 790
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	5 cut(s)	135, 329, 428, 472, 523
BslFI	GGGAC	6 cut(s)	8, 276, 715, 740, 741, 897
BslI	CCNNNNNNNGG	7 cut(s)	90, 279, 427, 471, 504, 529, 994
BsmAI	GTCTC	2 cut(s)	330, 370
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	6 cut(s)	8, 276, 715, 740, 741, 897
BsnI	GGCC	4 cut(s)	51, 262, 347, 835
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	3 cut(s)	317, 790, 800
Bsp13I	TCCGGA	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	1005
Bsp143I	GATC	3 cut(s)	213, 781, 958
BspACI	CCGC	4 cut(s)	81, 240, 431, 486
BspANI	GGCC	4 cut(s)	51, 262, 347, 835
BspCNI	CTCAG	2 cut(s)	120, 481
BspDI	ATCGAT	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	43, 45
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	966
BspQI	GCTCTTC	1 cut(s)	805
BspTI	CTTAAG	1 cut(s)	791
BsrFI	RCCGGY	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	1005
BsrI	ACTGG	3 cut(s)	626, 655, 955
BssAI	RCCGGY	1 cut(s)	427
BssMI	GATC	3 cut(s)	213, 781, 958
Bst4CI	ACNGT	6 cut(s)	282, 324, 361, 537, 706, 732
Bst6I	CTCTTC	2 cut(s)	209, 805
BstAFI	CTTAAG	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	1005
BstC8I	GCNNGC	2 cut(s)	429, 433
BstDEI	CTNAG	2 cut(s)	107, 489
BstF5I	GGATG	6 cut(s)	84, 131, 250, 610, 849, 1008
BstFNI	CGCG	2 cut(s)	43, 45
BstHHI	GCGC	2 cut(s)	45, 96
BstKTI	GATC	3 cut(s)	216, 784, 961
BstMAI	GTCTC	2 cut(s)	330, 370
BstMBI	GATC	3 cut(s)	213, 781, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 485, 539
BstUI	CGCG	2 cut(s)	43, 45
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	3 cut(s)	486, 878, 984
BstX2I	RGATCY	1 cut(s)	958
BstXI	CCANNNNNNTGG	2 cut(s)	401, 955
BstYI	RGATCY	1 cut(s)	958
Bsu15I	ATCGAT	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	51, 262, 347, 835
BsuTUI	ATCGAT	1 cut(s)	684
BtgZI	GCGATG	1 cut(s)	280
BtrI	CACGTC	2 cut(s)	766, 889
BtsCI	GGATG	6 cut(s)	84, 131, 250, 610, 849, 1008
BtsIMutI	CAGTG	4 cut(s)	375, 533, 648, 948
Cac8I	GCNNGC	2 cut(s)	429, 433
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	2 cut(s)	45, 96
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	260, 346
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	938, 1006
CviAII	CATG	2 cut(s)	709, 761
CviQI	GTAC	2 cut(s)	938, 1006
DdeI	CTNAG	2 cut(s)	107, 489
DpnI	GATC	3 cut(s)	215, 783, 960
DpnII	GATC	3 cut(s)	213, 781, 958
Eam1104I	CTCTTC	2 cut(s)	209, 805
EarI	CTCTTC	2 cut(s)	209, 805
EciI	GGCGGA	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	800
Eco57I	CTGAAG	2 cut(s)	845, 890
Eco88I	CYCGRG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	800
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	712, 764
FaqI	GGGAC	6 cut(s)	8, 276, 715, 740, 741, 897
FatI	CATG	2 cut(s)	708, 760
FauI	CCCGC	2 cut(s)	88, 424
FauNDI	CATATG	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	300, 486
FokI	GGATG	6 cut(s)	71, 118, 237, 617, 856, 995
FriOI	GRGCYC	1 cut(s)	800
Fsp4HI	GCNGC	2 cut(s)	300, 486
FspBI	CTAG	2 cut(s)	414, 627
GlaI	GCGC	2 cut(s)	44, 95
GluI	GCNGC	2 cut(s)	300, 486
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	51, 262, 347, 835
HapII	CCGG	5 cut(s)	135, 329, 428, 472, 523
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	2 cut(s)	45, 96
Hin1II	CATG	2 cut(s)	712, 764
Hin6I	GCGC	2 cut(s)	43, 94
HinP1I	GCGC	2 cut(s)	43, 94
HinfI	GANTC	3 cut(s)	332, 491, 901
HpaII	CCGG	5 cut(s)	135, 329, 428, 472, 523
HphI	GGTGA	1 cut(s)	378
Hpy166II	GTNNAC	2 cut(s)	619, 691
Hpy188I	TCNGA	2 cut(s)	812, 825
Hpy188III	TCNNGA	3 cut(s)	329, 414, 761
Hpy8I	GTNNAC	2 cut(s)	619, 691
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	7 cut(s)	41, 45, 780, 820, 871, 1022, 1025
HpyCH4III	ACNGT	6 cut(s)	282, 324, 361, 537, 706, 732
HpyCH4IV	ACGT	2 cut(s)	765, 888
HpyCH4V	TGCA	1 cut(s)	1024
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 485, 539
HpyF3I	CTNAG	2 cut(s)	107, 489
HpySE526I	ACGT	2 cut(s)	765, 888
Hsp92II	CATG	2 cut(s)	712, 764
HspAI	GCGC	2 cut(s)	43, 94
Kpn2I	TCCGGA	1 cut(s)	328
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	213, 781, 958
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	4 cut(s)	35, 65, 320, 927
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	414, 627
MaeII	ACGT	2 cut(s)	765, 888
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	215, 783, 960
MboI	GATC	3 cut(s)	213, 781, 958
MboII	GAAGA	7 cut(s)	196, 297, 486, 792, 883, 896, 984
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	3 cut(s)	317, 790, 800
MluCI	AATT	3 cut(s)	66, 102, 849
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	140, 526
MroI	TCCGGA	1 cut(s)	328
MroNI	GCCGGC	1 cut(s)	427
MseI	TTAA	3 cut(s)	399, 792, 912
MslI	CAYNNNNRTG	2 cut(s)	399, 896
MspA1I	CMGCKG	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	791
MspI	CCGG	5 cut(s)	135, 329, 428, 472, 523
MvnI	CGCG	2 cut(s)	43, 45
MwoI	GCNNNNNNNGC	3 cut(s)	57, 485, 539
NaeI	GCCGGC	1 cut(s)	429
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	3 cut(s)	213, 781, 958
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	712, 764
NlaIV	GGNNCC	1 cut(s)	348
PagI	TCATGA	1 cut(s)	760
PceI	AGGCCT	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	332, 901
PkrI	GCNGC	2 cut(s)	301, 487
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	698
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	260, 346
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	2 cut(s)	939, 1007
RsaNI	GTAC	2 cut(s)	938, 1006
RseI	CAYNNNNRTG	2 cut(s)	399, 896
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	399, 792, 912
SatI	GCNGC	2 cut(s)	300, 486
Sau3AI	GATC	3 cut(s)	213, 781, 958
Sau96I	GGNCC	2 cut(s)	260, 346
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	3 cut(s)	317, 790, 800
SetI	ASST	8 cut(s)	189, 275, 553, 682, 696, 768, 882, 891
SfaNI	GCATC	1 cut(s)	595
SmiMI	CAYNNNNRTG	2 cut(s)	399, 896
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	3 cut(s)	66, 102, 849
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	4 cut(s)	81, 240, 431, 486
SspI	AATATT	2 cut(s)	513, 717
SspMI	CTAG	2 cut(s)	414, 627
StuI	AGGCCT	1 cut(s)	835
TaaI	ACNGT	6 cut(s)	282, 324, 361, 537, 706, 732
TaiI	ACGT	2 cut(s)	768, 891
TaqI	TCGA	3 cut(s)	212, 266, 684
TasI	AATT	3 cut(s)	66, 102, 849
TatI	WGTACW	1 cut(s)	1005
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	332, 901
Tru1I	TTAA	3 cut(s)	399, 792, 912
Tru9I	TTAA	3 cut(s)	399, 792, 912
TscAI	CASTG	4 cut(s)	382, 540, 655, 955
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	860, 879, 1004
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	4 cut(s)	382, 540, 655, 955
Vha464I	CTTAAG	1 cut(s)	791
XapI	RAATTY	3 cut(s)	66, 102, 849
XbaI	TCTAGA	1 cut(s)	413
XspI	CTAG	2 cut(s)	414, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.