Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000772.1

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Reverse (-)

74859 .. 75560

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000772.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggatctcttcacttccatctctgcctcccccttctctgtcgcttcgccgatcggccgctgcaatttaaacaccttcaagcgcttcactcatcccatcattgcttcttctctcagctccccatcttccccggaatcaaaatcatcatcagctccaagtcaaacagtagtttcctccactgaaacctcagcaaatgcttgtcctgcttcctccagaccgcccgagccgagcttcaactacgcccttgccaacggcagcttgtttgctcggtttgccaagtctgctgagtcttccattgaaagagtacatgaatttaaccatttcactatgcttgcttcgttatgtgttgggaatgtttcagagatttctgatgcagagcggatggcggcccaatttgaggaacagttagatcgtgctaaaggtggaaaacgaaaagtgactagtagacaggaaatggcagttcggtgtctgattgggacgcaccttacctttccagaaagggaatcgcgccagaaacaagactcatggctatgccatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

181

Amino Acids

19.75

Weight (kDa)

7.69

Isoelectric Point (pI)

72.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	1 cut(s)	508
AciI	CCGC	4 cut(s)	58, 218, 379, 386
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	79, 235, 299
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	5 cut(s)	117, 152, 231, 258, 541
AluI	AGCT	5 cut(s)	117, 152, 231, 258, 541
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	2 cut(s)	55, 387
ApeKI	GCWGC	2 cut(s)	60, 255
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	84, 510
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	47, 267
BccI	CCATC	4 cut(s)	26, 104, 130, 376
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	131
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	4 cut(s)	58, 61, 256, 387
BlsI	GCNGC	4 cut(s)	59, 62, 257, 388
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	91, 387
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	127, 201, 276
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	47, 267
Bsh1236I	CGCG	1 cut(s)	508
Bsh1285I	CGRYCG	2 cut(s)	54, 58
BshFI	GGCC	2 cut(s)	57, 389
BsiEI	CGRYCG	2 cut(s)	54, 58
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	57, 389
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	4, 51, 409
BspACI	CCGC	4 cut(s)	58, 218, 379, 386
BspANI	GGCC	2 cut(s)	57, 389
BspCNI	CTCAG	3 cut(s)	126, 200, 277
BspFNI	CGCG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	4, 51, 409
Bst4CI	ACNGT	2 cut(s)	166, 405
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	113, 187, 285
BstF5I	GGATG	2 cut(s)	91, 387
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 510
BstKTI	GATC	3 cut(s)	7, 54, 412
BstMBI	GATC	3 cut(s)	4, 51, 409
BstMCI	CGRYCG	2 cut(s)	54, 58
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 272, 281
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	47, 267
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 389
BtsCI	GGATG	2 cut(s)	91, 387
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	84, 510
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	308, 525, 536
CviJI	RGCY	9 cut(s)	57, 117, 152, 226, 231, 258, 389, 529, 541
CviKI_1	RGCY	9 cut(s)	57, 117, 152, 226, 231, 258, 389, 529, 541
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	113, 187, 285
DpnI	GATC	3 cut(s)	6, 53, 411
DpnII	GATC	3 cut(s)	4, 51, 409
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	221
FaeI	CATG	3 cut(s)	311, 528, 539
FaiI	YATR	6 cut(s)	309, 329, 343, 526, 532, 537
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	307, 524, 535
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	58, 61, 256, 387
FokI	GGATG	2 cut(s)	78, 394
Fsp4HI	GCNGC	4 cut(s)	58, 61, 256, 387
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	2 cut(s)	83, 509
GluI	GCNGC	4 cut(s)	58, 61, 256, 387
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	57, 389
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	84, 510
Hin1II	CATG	3 cut(s)	311, 528, 539
Hin6I	GCGC	2 cut(s)	82, 508
HinP1I	GCGC	2 cut(s)	82, 508
HinfI	GANTC	4 cut(s)	134, 287, 503, 521
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	361, 370, 471
Hpy188III	TCNNGA	2 cut(s)	213, 494
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	43, 85
HpyCH4III	ACNGT	2 cut(s)	166, 405
HpyCH4V	TGCA	2 cut(s)	63, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 272, 281
HpyF3I	CTNAG	3 cut(s)	113, 187, 285
Hsp92II	CATG	3 cut(s)	311, 528, 539
HspAI	GCGC	2 cut(s)	82, 508
Kzo9I	GATC	3 cut(s)	4, 51, 409
LmnI	GCTCC	2 cut(s)	122, 157
LpnPI	CCDG	6 cut(s)	144, 216, 226, 434, 507, 524
Lsp1109I	GCAGC	2 cut(s)	47, 267
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	6, 53, 411
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	3 cut(s)	4, 51, 409
MboII	GAAGA	3 cut(s)	99, 117, 282
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	64, 311, 392
MlyI	GAGTC	2 cut(s)	296, 515
MnlI	CCTC	5 cut(s)	37, 184, 196, 220, 391
MseI	TTAA	2 cut(s)	68, 315
MslI	CAYNNNNRTG	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	203, 272, 281
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	4, 51, 409
NlaIII	CATG	3 cut(s)	311, 528, 539
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	134, 503
PkrI	GCNGC	4 cut(s)	59, 62, 257, 388
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	2 cut(s)	295, 515
PpsI	GAGTC	2 cut(s)	295, 515
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	68, 315
SatI	GCNGC	4 cut(s)	58, 61, 256, 387
Sau3AI	GATC	3 cut(s)	4, 51, 409
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	296, 515
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	529
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	3 cut(s)	64, 311, 392
SsiI	CCGC	4 cut(s)	58, 218, 379, 386
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	166, 405
TasI	AATT	3 cut(s)	64, 311, 392
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	2 cut(s)	60, 389
TfiI	GAWTC	2 cut(s)	134, 503
Tru1I	TTAA	2 cut(s)	68, 315
Tru9I	TTAA	2 cut(s)	68, 315
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	60, 255
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.