Rh1DG041600

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005158
Physical Location & Seq
Reverse (-)
6607667 .. 6669590
61924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG041600.1

Sequence Viewer

Length: 699 bp
ATGGCTCTCTTCACTTCAATCTCCGCCTCCCCATTCTCCGTCGCGTTGCCGATCGGCCGCTGCCCTTTAAACACCTTCAAGCGCTTCACTCATCCCATCATTGCTTCTTCTCTCAGCTCCCCATCTTCCCCGGAATCAAAATCATCATCAGCTCCAAGTCAAACCGTAGTTTCCTCCACTGAAACCTCAGCAAATGCTTATCCTGCTTCCTCCAGACCGCCCGAGCCGAGCTTCAACTACGCCCTTGCCAACGGCAGCCTGTTTGCTCGATTTGCTAAGTCTGCTGAGTCTTCCATTGAAAGAACAATATTTGACTTCCGATTTTTGGCGCTACTGGCTGTTGGAGATGTTTATCTTGCTGGGACTGTCATGTTAATATTTGGTATGGGATTGTATGGATTATTTATCAGTAATGTGCCTAATGATGTGCCTTCCAACGCTGATCGTGCTTTGAAGGGATCTTCTTTGTTTGGAATGTTTGCTTTGAAGGAGAGGCCTAAATGGATGAAAATTAGCTCACTTGATGAATTGAAGACGAAAGTGGGGCATGTTATTGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAGATGGTGCAGATAACCACTGGTTTGGATCTACTGAGCTATTCTGTCTGTATTTTTCTGTCTTCTGCTTCTTTGTACATCCTTCATAATCTACACAAGGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

232

Amino Acids

25.13

Weight (kDa)

9.39

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 108 - 196 9.2e-21 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 24, 58, 218
AclWI GGATC 2 cut(s) 466, 627
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 1 cut(s) 668
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 7 cut(s) 18, 79, 235, 299, 454, 487, 532
AluBI AGCT 5 cut(s) 117, 152, 231, 516, 630
AluI AGCT 5 cut(s) 117, 152, 231, 516, 630
AlwI GGATC 2 cut(s) 466, 627
Ama87I CYCGRG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 2 cut(s) 55, 494
ApeKI GCWGC 2 cut(s) 60, 255
AspLEI GCGC 2 cut(s) 84, 331
AsuC2I CCSGG 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 221
BbsI GAAGAC 3 cut(s) 282, 539, 645
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 47, 267
BccI CCATC 3 cut(s) 104, 130, 589
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 85, 332
BisI GCNGC 3 cut(s) 58, 61, 256
BlsI GCNGC 3 cut(s) 59, 62, 257
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 131
BpiI GAAGAC 3 cut(s) 282, 539, 645
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 339, 616
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 3 cut(s) 91, 510, 669
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 4 cut(s) 127, 201, 276, 617
BseNI ACTGG 2 cut(s) 339, 616
BseRI GAGGAG 1 cut(s) 601
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 47, 267
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 620
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 2 cut(s) 54, 58
BshFI GGCC 2 cut(s) 57, 496
BsiEI CGRYCG 2 cut(s) 54, 58
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 2 cut(s) 57, 496
BsoBI CYCGRG 1 cut(s) 221
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 4 cut(s) 51, 442, 458, 619
BspACI CCGC 3 cut(s) 24, 58, 218
BspANI GGCC 2 cut(s) 57, 496
BspCNI CTCAG 4 cut(s) 126, 200, 277, 618
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 558
BspPI GGATC 2 cut(s) 466, 627
BsrDI GCAATG 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 2 cut(s) 339, 616
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 51, 442, 458, 619
Bst4CI ACNGT 2 cut(s) 166, 367
Bst6I CTCTTC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 666
BstDEI CTNAG 5 cut(s) 113, 187, 276, 285, 626
BstF5I GGATG 3 cut(s) 91, 510, 669
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 2 cut(s) 85, 332
BstHHI GCGC 2 cut(s) 84, 331
BstKTI GATC 4 cut(s) 54, 445, 461, 622
BstMBI GATC 4 cut(s) 51, 442, 458, 619
BstMCI CGRYCG 2 cut(s) 54, 58
BstMWI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 446
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 47, 267
BstV2I GAAGAC 3 cut(s) 282, 539, 645
BstX2I RGATCY 2 cut(s) 458, 619
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 2 cut(s) 458, 619
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 57, 496
BtsCI GGATG 3 cut(s) 91, 510, 669
BtsIMutI CAGTG 2 cut(s) 177, 609
CciI TCATGA 1 cut(s) 558
CfoI GCGC 2 cut(s) 84, 331
Csp6I GTAC 1 cut(s) 667
CviAII CATG 3 cut(s) 370, 548, 559
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 5 cut(s) 113, 187, 276, 285, 626
DpnI GATC 4 cut(s) 53, 444, 460, 621
DpnII GATC 4 cut(s) 51, 442, 458, 619
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 221
FaeI CATG 3 cut(s) 373, 551, 562
FaiI YATR 6 cut(s) 371, 386, 396, 549, 560, 678
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 369, 547, 558
Fnu4HI GCNGC 3 cut(s) 58, 61, 256
FokI GGATG 3 cut(s) 78, 517, 656
Fsp4HI GCNGC 3 cut(s) 58, 61, 256
GlaI GCGC 2 cut(s) 83, 330
GluI GCNGC 3 cut(s) 58, 61, 256
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 2 cut(s) 85, 332
HaeIII GGCC 2 cut(s) 57, 496
HapII CCGG 1 cut(s) 131
HhaI GCGC 2 cut(s) 84, 331
Hin1II CATG 3 cut(s) 373, 551, 562
Hin6I GCGC 2 cut(s) 82, 329
HinP1I GCGC 2 cut(s) 82, 329
HinfI GANTC 3 cut(s) 134, 287, 562
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 2 cut(s) 213, 559
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 6 cut(s) 85, 441, 448, 481, 683, 686
HpyCH4III ACNGT 2 cut(s) 166, 367
HpyCH4V TGCA 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 446
HpyF3I CTNAG 5 cut(s) 113, 187, 276, 285, 626
Hsp92II CATG 3 cut(s) 373, 551, 562
HspAI GCGC 2 cut(s) 82, 329
Kzo9I GATC 4 cut(s) 51, 442, 458, 619
LmnI GCTCC 3 cut(s) 122, 157, 588
LpnPI CCDG 8 cut(s) 144, 216, 226, 272, 320, 345, 554, 597
Lsp1109I GCAGC 2 cut(s) 47, 267
MalI GATC 4 cut(s) 53, 444, 460, 621
MboI GATC 4 cut(s) 51, 442, 458, 619
MboII GAAGA 7 cut(s) 99, 117, 282, 453, 544, 557, 645
MflI RGATCY 2 cut(s) 458, 619
MluCI AATT 2 cut(s) 510, 527
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 322, 459
MnlI CCTC 6 cut(s) 37, 184, 196, 220, 486, 579
MseI TTAA 2 cut(s) 68, 374
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 446
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 51, 442, 458, 619
NlaIII CATG 3 cut(s) 373, 551, 562
NmeAIII GCCGAG 1 cut(s) 252
NspI RCATGY 1 cut(s) 551
PagI TCATGA 1 cut(s) 558
PceI AGGCCT 1 cut(s) 496
PfeI GAWTC 2 cut(s) 134, 562
PkrI GCNGC 3 cut(s) 59, 62, 257
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 458, 619
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 68, 374
SatI GCNGC 3 cut(s) 58, 61, 256
Sau3AI GATC 4 cut(s) 51, 442, 458, 619
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 131
SetI ASST 7 cut(s) 77, 119, 154, 188, 233, 518, 632
Sse9I AATT 2 cut(s) 510, 527
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 3 cut(s) 24, 58, 218
SspI AATATT 2 cut(s) 309, 378
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 166, 367
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 510, 527
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 134, 562
Tru1I TTAA 2 cut(s) 68, 374
Tru9I TTAA 2 cut(s) 68, 374
TscAI CASTG 2 cut(s) 184, 616
TseI GCWGC 2 cut(s) 60, 255
TspDTI ATGAA 3 cut(s) 521, 540, 665
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 184, 616
XceI RCATGY 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.