Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000654.1

Orthogroup ID

OG0005158

Physical Location & Seq

Genomic Coordinates Forward (+)

207804 .. 208115

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000654.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggctctcttcacttccatctccgcctccccattctccgtcgcgttgctgatcggccgctgccctttaaacaccttcaagcgcttcactcatcccatcattgcttcttctctcagctccccatcttccccggaatcaaaatcatcatcagctccaagtcaaacagtagtttcctccactgaaacctcagaaaatgcttatcctacttcctccagaccgcccgagccgagcttcaactacgcccttgccaacggcagcctgtttgctcggtttgccagtctgctgagtctcttccatttaaagagtacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

103

Amino Acids

10.92

Weight (kDa)

9.51

Isoelectric Point (pI)

69.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13720
fragaria_vesca	FvH4_7g01620 FvH4_7g01620
malus_domestica	MD02G1302400.v1.1 MD07G1021700.v1.1
prunus_persica	Prupe.2G021800_v2.0.a1 Prupe.2G021800_v2.0.a1
pyrus_communis	pycom02g25470 pycom07g01640
rosa_chinensis	RchiOBHm_Chr1g0317891
rosa_laevigata	RLG00000030579
rosa_multiflora	Rmu_co8203290.1_g000001 Rmu_sc0000654.1_g000020 Rmu_sc0000654.1_g000031 Rmu_sc0000654.1_g000043 Rmu_sc0000654.1_g000053 Rmu_sc0000772.1_g000028 Rmu_sc0002922.1_g000003 Rmu_sc0002922.1_g000004 Rmu_sc0011228.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330150
rosa_rugosa	Rorug01G0018400
rosa_samantha	Rh1AG029900 Rh1BG025900 Rh1CG027100 Rh1CG027600 Rh1CG028500 Rh1DG041600 Rh1DG042600
rosa_wichuraiana	Rw1G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	24, 58, 218
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	1 cut(s)	307
AfeI	AGCGCT	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	79, 235
AluBI	AGCT	3 cut(s)	117, 152, 231
AluI	AGCT	3 cut(s)	117, 152, 231
Alw26I	GTCTC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	60, 255
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	47, 267
BccI	CCATC	3 cut(s)	26, 104, 130
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	3 cut(s)	58, 61, 256
BlsI	GCNGC	3 cut(s)	59, 62, 257
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	127, 201, 275
BseNI	ACTGG	1 cut(s)	276
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	47, 267
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	24, 58, 218
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	126, 200, 276
BspFNI	CGCG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	14, 296
BstDEI	CTNAG	3 cut(s)	113, 187, 284
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	47, 267
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	7 cut(s)	5, 57, 117, 152, 226, 231, 258
CviKI_1	RGCY	7 cut(s)	5, 57, 117, 152, 226, 231, 258
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	113, 187, 284
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	2 cut(s)	69, 300
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	14, 296
EarI	CTCTTC	2 cut(s)	14, 296
EciI	GGCGGA	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	221
FaeI	CATG	1 cut(s)	312
FaiI	YATR	1 cut(s)	310
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	58, 61, 256
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	58, 61, 256
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	58, 61, 256
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	134, 286
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	113, 187, 284
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	122, 157
LpnPI	CCDG	4 cut(s)	144, 226, 272, 289
Lsp1109I	GCAGC	2 cut(s)	47, 267
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	3 cut(s)	99, 117, 283
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	4 cut(s)	37, 184, 196, 220
MseI	TTAA	2 cut(s)	68, 299
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	59, 62, 257
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	68, 299
SatI	GCNGC	3 cut(s)	58, 61, 256
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	77, 119, 154, 188, 233
SsiI	CCGC	3 cut(s)	24, 58, 218
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	68, 299
Tru9I	TTAA	2 cut(s)	68, 299
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	60, 255
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.