Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

4997489 .. 5003253

Gene Structure 5765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGGCGACGAGCAAACCTCAAAGATCGCCGGCTGAAATTGAGGATATAATCCTCCGGAAGATATTTTATGTAACCCTAACGGAATCAACTGATTCCGATCCTCGTATTGTTTACTTGGAGATGACGGCCGCTGAGATTCTCAGCGAAGGTAAAGAGCTTTTGCTTTCTCGTGATTTGATGGAGAGAGTTCTCATAGATCGTCTCTCCGGCGACTTTTCCGACGCCGAACCGCCTTTCCCGTATTTAATCGGTTGCCACCGTCGTGCTTACGACGAATCGAAGAAAATCCAGTCGATGAAGGATAAGAATCTGAGATCGGAGATGGAGATTGTCACTAAACAAGCGAAGAAGCTTGCTGTTTCTTACTGTAGGATTCACTTGGGGAATCCTGACATGTTTGGGAACTCGGATAAACCTAGTGGTGGATTGGATAATAGGTTGAAGAAGAGGAATGTCTCTCCGGTTCTTCCGTTGATCTTTGCTGAGGTTGGTTCTGGTTCGTTGGATATGTTTGGAGCTAGTAGCAGTGGGGTTCAAGCTCCTCCTGGGTTTTTGGATGAGTTTTTCAAAGACTCGGATTTTGATAGCTTGGACTCGATTCTAAAGGAGCTGTATGAGGATTTGAGGTCTACGGTTATAAATGTATCAGTGCTTGGAGATTTCCAGCCACCACTGAGGGCACTCAAGTATCTTGTTAGCTTACCAGTAGGAGCTAAATCTCTGGTTAGTCATGAGTGGTGGGTTCCACGGGGTGCCTATATGAACGGCCGAGCAATGGAGTTGACTAGCATTCTTGGGCCTTTCTTCCATATTAGTGCGCTGCCAGATAATACACTATTCAAGAGTCAACCTGATGTTGGGCAGCAGTGTTTCTCTGAAGCATCGGAACGTCGTCCCGCAGATTTATTATCATCCTTCTCCACGATTAAAAATTTCATGAACATTTTGTACAGCGGGCTGCATGATGTATTGATGATTTTACTTAAAAGTACTGATACCCGTGAGCGTGTTCTACAGTTTCTTGCAGAGGTGATCAATGCAAATGCGTCTAGAGCCCATATACAGGTTGATCCAGTCTCTTGTGCTAGCTCAGGCATGTTTGTTAACCTTAGTGCAGTAATGCTCCGGCTCTGTGAACCATTTTTAGACCCACATTTAACGAAAAGGGATAAGATTGATCCAAAATACGCATTCTGTGGCCATCGCTTAAAATTAAGCGACTTGACCGCTCTCCATGCATCATCCGAAGAAGTTACTGAGTGGATTGGCAAAGATGCTATGGCAAACGCAAATGATGCTGGGCGAGAAAATGGGAACGAAAGTCGCTTGTTACAATCCAAAGAAGCCACAAGTTCTAGTAGTAATGCTTCTGGGCAAAATGCAAAGTCAGCAACTAAATACACTTTCATTTGTGAATGCTTCTTTATGACTGCTAGGGTCCTCAATTTGGGTCTCCTAAAAGCACTCTCTGACTTTAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGATAATCTTGCAACGCTAAAAGCCATGAGAGATCAAGCACCTTCTCCACAGTTGGAACTTGATATATCCCGAATGGAAAAAGAACTAGAGCTGTCTTCGCAGGAAAAGCTTTGCCATGAGGCCCAAATATTGAGGGATGGAGATTTTATTCAGCGAGCTCTGTCTTTCTATCGCCTAATGGTTGTTTGGTTAGTTGGACTAGTCGGTGGCTTTAAGATGCCTCTACCGTCAACTTGCCCTATGGAATTCTCCTGTATGCCTGAGCATTTTGTTGAAGATGCAATGGAGTTGCTGATATTCGCTTCAAGAATTCCCAAAGCTTTGGACGGGGTGCCGCTGGACGACTTTATGAACTTCATAATTATGTTCATGGCAAGTCCTGAATATGTTAGAAACCCGTATCTCAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATGCCTCGTTCAAGTAGTTCTTCTTCTGCTACATCTACTCTCTTTGAGGGACATCAGTTATCGCTCGAGTATCTTGTCAGGAATTTACTGAAACTATATGTTGACATTGAGTTCACGGGTTCACACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCCGAGCTTTTAGAGTATCTCTGGCAGGTGCCTAGTCACCGAAATGCATGGAGACGGATTGCAAAAGACGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTCTTAGTCAATGATAGCATCTATCTTCTGGATGAAAGTCTAAACAAAATTCTCGAGATTAAACAAATCGAGGCAGACATGTCAAATACTGCAGAGTGGGAGCAGAGACCAACTCAAGAGAGACAGGAGAGAACAAGACTCTTCCATTCGCAGGAGAATATTGTTAGAATCGACATGAAGCTGGCAAATGAAGATGTGACTATGCTTGCATTTACATCCGAGGAGATCACTGCCCCTTTCCTACTCCCTGAGATGGTTGAGAGGGTTGCCAACATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAGCGTAAATCTTTAAGCCTGAAAGATCCTGAGAAATATGAATTCCGTCCAAAACAGTTACTTAAACAGATCGTTCGCATATATGTTAATCTCGCAAGAGGAGACACAGTAAACATATTCCCTGGTGCCATCTCCAGTGATGGCCGATCATATAATGAACAGCTATTCAATGCAGGAGCAGATGTGCTTAGGAGAATAGGTGAAGAGGGAAGAATCATTCAAGAGTTTATGGAGTTAGGCACAAAAGCCAAAGCTGCTGCTTCTGAAGCTCTGGATGCTGAAGCTGCACTTGGGGAAATACCAGACGAGTTCCTTGACCCAATTCAGTACACGCTAATGAGAGATCCAGTAATACTTCCAAGCTCAAGAATCACAGTTGATCGTCCCATCATTCAACGTCATCTTCTCAGCGACAATCATGATCCATTTAACCGAGCACATTTGACATCGGATATGTTGATACCGGACATCGAGTTGAAGGCGAAAATCGATGAGTTTGTGAAGTCGCATCAGTCTAAGAAACGGACAAGTGGAGAAGATAGCAGCAACAAGGAAAGGATACAGACTACAAACAGTGATATGTTAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1038

Amino Acids

117.53

Weight (kDa)

5.42

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	265 - 924	6.4e-206	Ubiquitin elongating factor core
U-box	PF04564	941 - 1012	4.2e-31	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AarI	CACCTGC	1 cut(s)	2128
Acc36I	ACCTGC	1 cut(s)	2128
AccB1I	GGYRCC	4 cut(s)	752, 1840, 2140, 2648
AccBSI	CCGCTC	1 cut(s)	1229
AccI	GTMKAC	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	6 cut(s)	129, 230, 897, 954, 1227, 1844
AclWI	GGATC	6 cut(s)	92, 1064, 1172, 2543, 2861, 2939
AcoI	YGGCCR	4 cut(s)	126, 766, 1198, 2665
AcsI	RAATTY	6 cut(s)	931, 1754, 1818, 2029, 2262, 2564
AcuI	CTGAAG	3 cut(s)	897, 2808, 2823
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	752
AfaI	GTAC	4 cut(s)	950, 991, 2198, 2852
AfiI	CCNNNNNNNGG	7 cut(s)	422, 775, 857, 1063, 1447, 2365, 2467
AflIII	ACRYGT	2 cut(s)	393, 2292
AhlI	ACTAGT	1 cut(s)	1708
AjnI	CCWGG	2 cut(s)	544, 2644
AjuI	GAANNNNNNNTTGG	2 cut(s)	2796, 2828
AleI	CACNNNNGTG	1 cut(s)	261
AloI	GAACNNNNNNTCC	4 cut(s)	219, 251, 1939, 1971
Alw21I	GWGCWC	2 cut(s)	1669, 2962
Alw26I	GTCTC	8 cut(s)	206, 460, 1081, 1457, 2158, 2314, 2329, 2619
AlwI	GGATC	6 cut(s)	92, 1064, 1172, 2543, 2861, 2939
Ama87I	CYCGRG	3 cut(s)	1498, 2012, 2267
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	6 cut(s)	126, 766, 797, 1198, 1629, 2665
ApeKI	GCWGC	7 cut(s)	820, 862, 958, 2777, 2780, 2807, 3066
ApoI	RAATTY	6 cut(s)	931, 1754, 1818, 2029, 2262, 2564
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	4 cut(s)	797, 1438, 1630, 2519
AsuHPI	GGTGA	4 cut(s)	1042, 1517, 2141, 2735
AsuNHI	GCTAGC	1 cut(s)	1085
AvaI	CYCGRG	3 cut(s)	1498, 2012, 2267
AvaII	GGWCC	2 cut(s)	1438, 2519
BaeGI	GKGCMC	1 cut(s)	682
BaeI	ACNNNNGTAYC	2 cut(s)	671, 704
BalI	TGGCCA	1 cut(s)	1200
BanI	GGYRCC	4 cut(s)	752, 1840, 2140, 2648
BanII	GRGCYC	2 cut(s)	1057, 1669
BarI	GAAGNNNNNNTAC	8 cut(s)	1351, 1383, 1954, 1986, 2180, 2189, 2212, 2221
BauI	CACGAG	2 cut(s)	168, 2513
BbsI	GAAGAC	1 cut(s)	1596
Bbv12I	GWGCWC	2 cut(s)	1669, 2962
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	7 cut(s)	807, 874, 945, 2764, 2767, 2794, 3078
BccI	CCATC	9 cut(s)	172, 316, 1209, 1640, 1918, 2461, 2657, 2660, 2918
BceAI	ACGGC	2 cut(s)	141, 781
BciT130I	CCWGG	2 cut(s)	546, 2646
BciVI	GTATCC	1 cut(s)	3075
BclI	TGATCA	1 cut(s)	1032
BcoDI	GTCTC	8 cut(s)	206, 460, 1081, 1457, 2158, 2314, 2329, 2619
BcuI	ACTAGT	1 cut(s)	1708
BfmI	CTRYAG	3 cut(s)	367, 1013, 2304
BfuAI	ACCTGC	1 cut(s)	2128
BfuI	GTATCC	1 cut(s)	3075
BisI	GCNGC	9 cut(s)	129, 821, 863, 959, 1844, 2778, 2781, 2808, 3067
BlsI	GCNGC	9 cut(s)	130, 822, 864, 960, 1845, 2779, 2782, 2809, 3068
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	2 cut(s)	546, 2646
Bme18I	GGWCC	2 cut(s)	1438, 2519
BmeT110I	CYCGRG	3 cut(s)	1498, 2012, 2267
BmgT120I	GGNCC	4 cut(s)	797, 1438, 1630, 2519
BmiI	GGNNCC	7 cut(s)	744, 754, 1439, 1842, 2142, 2520, 2650
BmrFI	CCNGG	2 cut(s)	546, 2646
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	1596
BplI	GAGNNNNNCTC	3 cut(s)	33, 2311, 2343
BpmI	CTGGAG	1 cut(s)	2641
Bpu10I	CCTNAGC	5 cut(s)	483, 1090, 1488, 1770, 2711
BpuEI	CTTGAG	3 cut(s)	668, 2313, 2872
Bsa29I	ATCGAT	1 cut(s)	3012
BsaBI	GATNNNNATC	2 cut(s)	96, 306
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	2 cut(s)	1457, 2314
BsaJI	CCNNGG	4 cut(s)	545, 746, 2433, 2644
BsaWI	WCCGGW	3 cut(s)	54, 460, 2986
BsaXI	ACNNNNNCTCC	6 cut(s)	2616, 2646, 2691, 2707, 2721, 2737
Bsc4I	CCNNNNNNNGG	7 cut(s)	422, 775, 857, 1063, 1447, 2365, 2467
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	5 cut(s)	289, 704, 1073, 2658, 2870
Bse3DI	GCAATG	3 cut(s)	780, 1797, 2109
Bse8I	GATNNNNATC	2 cut(s)	96, 306
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	546, 2646
BseCI	ATCGAT	1 cut(s)	3012
BseDI	CCNNGG	4 cut(s)	545, 746, 2433, 2644
BseGI	GGATG	8 cut(s)	562, 911, 1241, 1651, 1953, 2251, 2429, 2803
BseJI	GATNNNNATC	2 cut(s)	96, 306
BseLI	CCNNNNNNNGG	7 cut(s)	422, 775, 857, 1063, 1447, 2365, 2467
BseMI	GCAATG	3 cut(s)	780, 1797, 2109
BseNI	ACTGG	5 cut(s)	289, 704, 1073, 2658, 2870
BseRI	GAGGAG	3 cut(s)	531, 2450, 2637
BseSI	GKGCMC	1 cut(s)	682
BseX3I	CGGCCG	2 cut(s)	126, 766
BseXI	GCAGC	7 cut(s)	807, 874, 945, 2764, 2767, 2794, 3078
BseYI	CCCAGC	1 cut(s)	1298
BsgI	GTGCAG	2 cut(s)	1134, 2793
Bsh1285I	CGRYCG	2 cut(s)	129, 769
BshFI	GGCC	6 cut(s)	128, 768, 799, 1200, 1631, 2667
BshNI	GGYRCC	4 cut(s)	752, 1840, 2140, 2648
BshVI	ATCGAT	1 cut(s)	3012
BsiEI	CGRYCG	2 cut(s)	129, 769
BsiHKAI	GWGCWC	2 cut(s)	1669, 2962
BsiHKCI	CYCGRG	3 cut(s)	1498, 2012, 2267
BsiSI	CCGG	6 cut(s)	29, 55, 207, 461, 1126, 2987
BslFI	GGGAC	3 cut(s)	879, 2010, 2892
BslI	CCNNNNNNNGG	7 cut(s)	422, 775, 857, 1063, 1447, 2365, 2467
BsmAI	GTCTC	8 cut(s)	206, 460, 1081, 1457, 2158, 2314, 2329, 2619
BsmBI	CGTCTC	2 cut(s)	206, 2158
BsmFI	GGGAC	3 cut(s)	879, 2010, 2892
BsmI	GAATGC	3 cut(s)	789, 1190, 1421
BsnI	GGCC	6 cut(s)	128, 768, 799, 1200, 1631, 2667
Bso31I	GGTCTC	2 cut(s)	1457, 2314
BsoBI	CYCGRG	3 cut(s)	1498, 2012, 2267
Bsp1286I	GDGCHC	4 cut(s)	682, 1057, 1669, 2962
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	948
BspACI	CCGC	6 cut(s)	129, 230, 897, 954, 1227, 1844
BspANI	GGCC	6 cut(s)	128, 768, 799, 1200, 1631, 2667
BspDI	ATCGAT	1 cut(s)	3012
BspEI	TCCGGA	1 cut(s)	54
BspHI	TCATGA	3 cut(s)	730, 936, 2941
BspLI	GGNNCC	7 cut(s)	744, 754, 1439, 1842, 2142, 2520, 2650
BspMAI	CTGCAG	1 cut(s)	2308
BspMI	ACCTGC	1 cut(s)	2128
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	6 cut(s)	92, 1064, 1172, 2543, 2861, 2939
BspT107I	GGYRCC	4 cut(s)	752, 1840, 2140, 2648
BspTNI	GGTCTC	2 cut(s)	1457, 2314
BsrBI	CCGCTC	1 cut(s)	1229
BsrDI	GCAATG	3 cut(s)	780, 1797, 2109
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	948
BsrI	ACTGG	5 cut(s)	289, 704, 1073, 2658, 2870
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	545, 746, 2433, 2644
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	2 cut(s)	168, 2513
Bst2BI	CACGAG	2 cut(s)	168, 2513
Bst2UI	CCWGG	2 cut(s)	546, 2646
Bst6I	CTCTTC	4 cut(s)	440, 2178, 2360, 2721
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	1295
BstAUI	TGTACA	1 cut(s)	948
BstC8I	GCNNGC	7 cut(s)	30, 354, 956, 1087, 1665, 2397, 2421
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	8 cut(s)	562, 911, 1241, 1651, 1953, 2251, 2429, 2803
BstHHI	GCGC	1 cut(s)	820
BstMAI	GTCTC	8 cut(s)	206, 460, 1081, 1457, 2158, 2314, 2329, 2619
BstMCI	CGRYCG	2 cut(s)	129, 769
BstNI	CCWGG	2 cut(s)	546, 2646
BstNSI	RCATGY	4 cut(s)	397, 1099, 2296, 2491
BstSCI	CCNGG	2 cut(s)	544, 2644
BstSFI	CTRYAG	3 cut(s)	367, 1013, 2304
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	7 cut(s)	807, 874, 945, 2764, 2767, 2794, 3078
BstV2I	GAAGAC	1 cut(s)	1596
BstX2I	RGATCY	2 cut(s)	2548, 2866
BstXI	CCANNNNNNTGG	1 cut(s)	1831
BstYI	RGATCY	2 cut(s)	2548, 2866
BstZI	CGGCCG	2 cut(s)	126, 766
Bsu15I	ATCGAT	1 cut(s)	3012
BsuI	GTATCC	1 cut(s)	3075
BsuRI	GGCC	6 cut(s)	128, 768, 799, 1200, 1631, 2667
BsuTUI	ATCGAT	1 cut(s)	3012
BtgI	CCRYGG	1 cut(s)	746
BtgZI	GCGATG	1 cut(s)	1187
BtsCI	GGATG	8 cut(s)	562, 911, 1241, 1651, 1953, 2251, 2429, 2803
BtsI	GCAGTG	3 cut(s)	532, 872, 2442
BtsIMutI	CAGTG	7 cut(s)	532, 654, 671, 872, 2442, 2665, 3103
BveI	ACCTGC	1 cut(s)	2128
Cac8I	GCNNGC	7 cut(s)	30, 354, 956, 1087, 1665, 2397, 2421
CciI	TCATGA	3 cut(s)	730, 936, 2941
CfoI	GCGC	1 cut(s)	820
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	797, 1438, 1630, 2519
ClaI	ATCGAT	1 cut(s)	3012
CseI	GACGC	2 cut(s)	230, 1035
Csp6I	GTAC	4 cut(s)	949, 990, 2197, 2851
CviQI	GTAC	4 cut(s)	949, 990, 2197, 2851
DraI	TTTAAA	1 cut(s)	1477
DraIII	CACNNNGTG	1 cut(s)	752
EaeI	YGGCCR	4 cut(s)	126, 766, 1198, 2665
EagI	CGGCCG	2 cut(s)	126, 766
Eam1104I	CTCTTC	4 cut(s)	440, 2178, 2360, 2721
EarI	CTCTTC	4 cut(s)	440, 2178, 2360, 2721
Ecl136II	GAGCTC	1 cut(s)	1667
EclXI	CGGCCG	2 cut(s)	126, 766
Eco24I	GRGCYC	2 cut(s)	1057, 1669
Eco31I	GGTCTC	2 cut(s)	1457, 2314
Eco47I	GGWCC	2 cut(s)	1438, 2519
Eco52I	CGGCCG	2 cut(s)	126, 766
Eco53kI	GAGCTC	1 cut(s)	1667
Eco57I	CTGAAG	3 cut(s)	897, 2808, 2823
Eco88I	CYCGRG	3 cut(s)	1498, 2012, 2267
EcoICRI	GAGCTC	1 cut(s)	1667
EcoO109I	RGGNCCY	1 cut(s)	1438
EcoRI	GAATTC	3 cut(s)	1754, 1818, 2564
EcoRII	CCWGG	2 cut(s)	544, 2644
EcoT22I	ATGCAT	2 cut(s)	1240, 2161
EcoT38I	GRGCYC	2 cut(s)	1057, 1669
Esp3I	CGTCTC	2 cut(s)	206, 2158
FalI	AAGNNNNNCTT	6 cut(s)	1500, 1532, 1951, 1983, 2796, 2828
FaqI	GGGAC	3 cut(s)	879, 2010, 2892
FauI	CCCGC	2 cut(s)	904, 947
FbaI	TGATCA	1 cut(s)	1032
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	9 cut(s)	129, 821, 863, 959, 1844, 2778, 2781, 2808, 3067
FokI	GGATG	8 cut(s)	569, 898, 1228, 1658, 1960, 2258, 2416, 2810
FriOI	GRGCYC	2 cut(s)	1057, 1669
Fsp4HI	GCNGC	9 cut(s)	129, 821, 863, 959, 1844, 2778, 2781, 2808, 3067
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	9 cut(s)	129, 821, 863, 959, 1844, 2778, 2781, 2808, 3067
GsaI	CCCAGC	1 cut(s)	1302
GsuI	CTGGAG	1 cut(s)	2641
HaeIII	GGCC	6 cut(s)	128, 768, 799, 1200, 1631, 2667
HapII	CCGG	6 cut(s)	29, 55, 207, 461, 1126, 2987
HgaI	GACGC	2 cut(s)	230, 1035
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	5 cut(s)	783, 848, 1105, 1740, 2050
HindII	GTYRAC	5 cut(s)	783, 848, 1105, 1740, 2050
HindIII	AAGCTT	3 cut(s)	350, 1616, 1827
HpaI	GTTAAC	1 cut(s)	1105
HpaII	CCGG	6 cut(s)	29, 55, 207, 461, 1126, 2987
HphI	GGTGA	4 cut(s)	1042, 1517, 2141, 2735
Hpy99I	CGWCG	5 cut(s)	10, 224, 264, 275, 894
HpyAV	CCTTC	6 cut(s)	140, 292, 925, 1560, 2182, 2995
HpyCH4IV	ACGT	2 cut(s)	889, 2920
HpySE526I	ACGT	2 cut(s)	889, 2920
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	1 cut(s)	818
Kpn2I	TCCGGA	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	1032
KspAI	GTTAAC	1 cut(s)	1105
LmnI	GCTCC	7 cut(s)	515, 544, 607, 710, 1128, 2314, 2699
Lsp1109I	GCAGC	7 cut(s)	807, 874, 945, 2764, 2767, 2794, 3078
MaeII	ACGT	2 cut(s)	889, 2920
MaeIII	GTNAC	7 cut(s)	70, 331, 1252, 1329, 2147, 2410, 2580
MbiI	CCGCTC	1 cut(s)	1229
MflI	RGATCY	2 cut(s)	2548, 2866
MhlI	GDGCHC	4 cut(s)	682, 1057, 1669, 2962
MlsI	TGGCCA	1 cut(s)	1200
MluNI	TGGCCA	1 cut(s)	1200
MlyI	GAGTC	4 cut(s)	566, 587, 853, 2346
MmeI	TCCRAC	4 cut(s)	243, 483, 1542, 1684
Mox20I	TGGCCA	1 cut(s)	1200
Mph1103I	ATGCAT	2 cut(s)	1240, 2161
MroI	TCCGGA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	1200
MslI	CAYNNNNRTG	5 cut(s)	261, 813, 1871, 2154, 2858
Msp20I	TGGCCA	1 cut(s)	1200
MspA1I	CMGCKG	3 cut(s)	131, 954, 1846
MspI	CCGG	6 cut(s)	29, 55, 207, 461, 1126, 2987
MspR9I	CCNGG	2 cut(s)	546, 2646
Mva1269I	GAATGC	3 cut(s)	789, 1190, 1421
MvaI	CCWGG	2 cut(s)	546, 2646
NaeI	GCCGGC	1 cut(s)	30
NgoMIV	GCCGGC	1 cut(s)	28
NheI	GCTAGC	1 cut(s)	1085
NlaIV	GGNNCC	7 cut(s)	744, 754, 1439, 1842, 2142, 2520, 2650
NmeAIII	GCCGAG	2 cut(s)	794, 2140
NmuCI	GTSAC	3 cut(s)	331, 2147, 2410
NsiI	ATGCAT	2 cut(s)	1240, 2161
NspI	RCATGY	4 cut(s)	397, 1099, 2296, 2491
OliI	CACNNNNGTG	1 cut(s)	261
PaeR7I	CTCGAG	3 cut(s)	1498, 2012, 2267
PagI	TCATGA	3 cut(s)	730, 936, 2941
PaqCI	CACCTGC	1 cut(s)	2128
PciI	ACATGT	2 cut(s)	393, 2292
PctI	GAATGC	3 cut(s)	789, 1190, 1421
PdiI	GCCGGC	1 cut(s)	30
PkrI	GCNGC	9 cut(s)	130, 822, 864, 960, 1845, 2779, 2782, 2809, 3068
PleI	GAGTC	4 cut(s)	566, 587, 852, 2346
PpsI	GAGTC	4 cut(s)	566, 587, 852, 2346
PpuMI	RGGWCCY	1 cut(s)	1438
PscI	ACATGT	2 cut(s)	393, 2292
PsiI	TTATAA	1 cut(s)	638
Psp124BI	GAGCTC	1 cut(s)	1669
Psp5II	RGGWCCY	1 cut(s)	1438
Psp6I	CCWGG	2 cut(s)	544, 2644
PspFI	CCCAGC	1 cut(s)	1298
PspGI	CCWGG	2 cut(s)	544, 2644
PspN4I	GGNNCC	7 cut(s)	744, 754, 1439, 1842, 2142, 2520, 2650
PspPI	GGNCC	4 cut(s)	797, 1438, 1630, 2519
PspPPI	RGGWCCY	1 cut(s)	1438
PspXI	VCTCGAGB	1 cut(s)	2012
PsrI	GAACNNNNNNTAC	2 cut(s)	932, 964
PstI	CTGCAG	1 cut(s)	2308
PsuI	RGATCY	2 cut(s)	2548, 2866
RsaI	GTAC	4 cut(s)	950, 991, 2198, 2852
RsaNI	GTAC	4 cut(s)	949, 990, 2197, 2851
RseI	CAYNNNNRTG	5 cut(s)	261, 813, 1871, 2154, 2858
SacI	GAGCTC	1 cut(s)	1669
SatI	GCNGC	9 cut(s)	129, 821, 863, 959, 1844, 2778, 2781, 2808, 3067
Sau96I	GGNCC	4 cut(s)	797, 1438, 1630, 2519
ScaI	AGTACT	1 cut(s)	991
SchI	GAGTC	4 cut(s)	566, 587, 853, 2346
ScrFI	CCNGG	2 cut(s)	546, 2646
SduI	GDGCHC	4 cut(s)	682, 1057, 1669, 2962
SfcI	CTRYAG	3 cut(s)	367, 1013, 2304
Sfr274I	CTCGAG	3 cut(s)	1498, 2012, 2267
SinI	GGWCC	2 cut(s)	1438, 2519
SlaI	CTCGAG	3 cut(s)	1498, 2012, 2267
SmiMI	CAYNNNNRTG	5 cut(s)	261, 813, 1871, 2154, 2858
SmlI	CTYRAG	6 cut(s)	683, 1498, 2012, 2267, 2328, 2887
SmoI	CTYRAG	6 cut(s)	683, 1498, 2012, 2267, 2328, 2887
SpeI	ACTAGT	1 cut(s)	1708
SsiI	CCGC	6 cut(s)	129, 230, 897, 954, 1227, 1844
SspI	AATATT	3 cut(s)	1638, 2098, 2374
SstI	GAGCTC	1 cut(s)	1669
StyD4I	CCNGG	2 cut(s)	544, 2644
TaiI	ACGT	2 cut(s)	892, 2923
TatI	WGTACW	4 cut(s)	948, 989, 2196, 2850
TauI	GCSGC	2 cut(s)	131, 1846
TscAI	CASTG	7 cut(s)	532, 654, 678, 872, 2449, 2665, 3103
TseFI	GTSAC	3 cut(s)	331, 2147, 2410
TseI	GCWGC	7 cut(s)	820, 862, 958, 2777, 2780, 2807, 3066
Tsp45I	GTSAC	3 cut(s)	331, 2147, 2410
TspGWI	ACGGA	5 cut(s)	95, 459, 2182, 2558, 3061
TspRI	CASTG	7 cut(s)	532, 654, 678, 872, 2449, 2665, 3103
VpaK11BI	GGWCC	2 cut(s)	1438, 2519
XapI	RAATTY	6 cut(s)	931, 1754, 1818, 2029, 2262, 2564
XbaI	TCTAGA	1 cut(s)	1049
XceI	RCATGY	4 cut(s)	397, 1099, 2296, 2491
XhoI	CTCGAG	3 cut(s)	1498, 2012, 2267
XmiI	GTMKAC	1 cut(s)	629
ZrmI	AGTACT	1 cut(s)	991
Zsp2I	ATGCAT	2 cut(s)	1240, 2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.