Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002310.1

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

148867 .. 151512

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002310.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

atgggtaatttcgtctctgtcgaaccaccttttcagtacctagttggctgctacaaacgtgccgatgatgagtgtaagaagattacttctgtgaaaaataaggatttgaggtcttatatggaatctattattaggcaagccaagaagctgtcggtgtcgtatggtaggattcacttggggaacccggaagcgtttcctagtccaggtgggaattcaaataactcaataactgcgtcccctttgttgccgttgattttctcagaggttgcaagttcagtggatggatttggaggaagcagtagtagcccacctgggtttttggatgagttctttcgtgactcggattttgatatgttggaccccattttgaagggtttatatgaagaacttatggagactgtgcaaaatgtttcggcacttggaaactttcagcagccattgagggctctgttgtttttggttagtttcccagctggtgccaagtctcttgtgaatcacccaaggtggattcccaaaggagtcttgaatggccgtggtattgaaaagacaagtattttaggtcctttctttcatgtcagtgccctgtctgaccatcctttttctgttagtgagttcttttcagaaggttctaacacagctgataaatcttcgtacgtgacgattaagacagtgatgaacaatttatatgatggcctcgcacaagttctcctcacgctactgaaaaatccagacaccagcgagaaagttctcgagtatcttgctgtggttatcaacaagaactcatcaagagctcatatgcaagtggatcctctttcctgcgcaagttcggggatgtttgtcaatctcagtgcggtcatgcttcggctttgcgggccgcttttagatgcaaacttaaccaaaagagacaaaatttatccgaaatatgtgttctcaggtaaccgtctggagttgagaggtttgacagctctacatgctacatctgaggaagttactgaagggattagtaaagataacatgagcgctcaatattcttttaattgcgagtgcttcttcatgactgcgagggtgctcaatctgggtttattgaaagcattttctgaccataaacatttagaagagaacattcgcaggtttaaagaagcacttaatgccatcaaagacctgggttctccacagttgaacactaacatagctcagctcgagaaagaaataaagttgttagaacaggaaaggcattgctacgaagctcagatagtaagcgatgaaccacttgtacagcaggcgatttctttctaccggttgatggtggtgtggctaggtggcttggttggtggatttaaaatgcctctgccatcaacgtgccccgtagaatttgcatctatgccagagcattttgtggaagatgccatggagtttattttatttgcttcccggattccaaaagcatttagtgggatcttgttggatgattttatgaacttcataataatgttcatggcaagtccggaatatatcaggaacccttatctaagatcaaagatggttgaagtcctcaactgcttgatgccgggtggaaatcgaccatctgctgctcctcctactctgttcaaagagcacaaactgtctcttgagtatcttgtaaggaatctcttgaaactatatgtggatgttgagttgactggttctcacacacagttgtatgacaagtttaacatccggcacaaaattgctaagcttctcgagtatctgtggcaagtacctagtcatcgaaatgcttggaaaaaggttgctaaggaagaggagaagggcgtatatttgaattacttaaacttcttgatcaatgacagtatatatcttctggataacagttttaaaacgattcttgaacacaaacaactggaagccgagatgtcaaacaatgcagactggaagcgtcgacctgctcgagagaggaaggagaaagctcacctcttccactctcaggaaaagattatccaaactcatttgacgttcgcaaatgaagatctgaatacgctggcatttacttcagaacagattacagctcctttcctactcccagagatggttgaaagggtggcaagcgtgctgaattattttttgttgcaattggtaggtcctaaaagaaaatctcttaatttgatagaccccgagaaatgtaagtttcacccagagcaattgatcaagcagattgtctacatatatgttcatctggcaagaggcgatacagacaatacttttgcagctgccatttcgaaagatggtaggtcttccaatgaccaattgtttagtgctgccgcggatgtcttgaggaaaattggtgaagatgggagggccatacaagagtttgttgagcttggttccaaagctgaggttgctgcttcggaggcctcggacgctgaagctgcacttggagatataccagatgagttcctagacccaattcagtacactttaatgaaggatccagttatcctaccttcttcaagaatcacaatagaccggccagtcattcagaggcatcttcttagtgataatactgatccattcaatcgttcccatcttactgcggacatgttgataccagacaatgaattgaaagcaaaaatacaagagttcattaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

881

Amino Acids

99.27

Weight (kDa)

6.05

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2525
Acc16I	TGCGCA	1 cut(s)	820
Acc36I	ACCTGC	2 cut(s)	1119, 1948
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	2 cut(s)	1936, 2214
AccII	CGCG	1 cut(s)	2318
AccIII	TCCGGA	1 cut(s)	1504
AciI	CCGC	6 cut(s)	851, 870, 875, 2316, 2318, 2588
AclWI	GGATC	6 cut(s)	800, 813, 1463, 2477, 2490, 2555
AcoI	YGGCCR	2 cut(s)	529, 2522
AcsI	RAATTY	3 cut(s)	211, 909, 1370
AcuI	CTGAAG	3 cut(s)	1014, 2031, 2439
AfaI	GTAC	5 cut(s)	38, 653, 1275, 1758, 2468
AfeI	AGCGCT	1 cut(s)	1021
AfiI	CCNNNNNNNGG	4 cut(s)	203, 1303, 1981, 2083
AflIII	ACRYGT	1 cut(s)	2592
AgeI	ACCGGT	1 cut(s)	1296
AjnI	CCWGG	3 cut(s)	202, 310, 1161
AjuI	GAANNNNNNNTTGG	2 cut(s)	2412, 2444
Alw21I	GWGCWC	3 cut(s)	793, 1071, 1617
Alw26I	GTCTC	5 cut(s)	19, 389, 489, 897, 1629
AlwI	GGATC	6 cut(s)	800, 813, 1463, 2477, 2490, 2555
Ama87I	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
Aor13HI	TCCGGA	1 cut(s)	1504
Aor51HI	AGCGCT	1 cut(s)	1021
AoxI	GGCC	6 cut(s)	529, 691, 872, 2352, 2406, 2522
ApeKI	GCWGC	8 cut(s)	48, 433, 1589, 2261, 2264, 2312, 2396, 2423
ApoI	RAATTY	3 cut(s)	211, 909, 1370
ArsI	GACNNNNNNTTYG	4 cut(s)	329, 361, 2240, 2272
AsiGI	ACCGGT	1 cut(s)	1296
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	821, 1022
AspS9I	GGNCC	5 cut(s)	358, 560, 872, 2135, 2352
AsuC2I	CCSGG	3 cut(s)	185, 1432, 1569
AsuHPI	GGTGA	4 cut(s)	488, 1958, 2177, 2351
AsuII	TTCGAA	1 cut(s)	2273
AvaI	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
AvaII	GGWCC	3 cut(s)	358, 560, 2135
BaeGI	GKGCMC	2 cut(s)	583, 1364
BamHI	GGATCC	2 cut(s)	805, 2482
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	448, 793
BbsI	GAAGAC	1 cut(s)	2280
Bbv12I	GWGCWC	3 cut(s)	793, 1071, 1617
BbvCI	CCTCAGC	1 cut(s)	2388
BbvI	GCAGC	8 cut(s)	35, 445, 1576, 2251, 2273, 2299, 2383, 2410
BceAI	ACGGC	2 cut(s)	232, 516
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BciT130I	CCWGG	3 cut(s)	204, 312, 1163
BclI	TGATCA	2 cut(s)	1836, 2199
BcnI	CCSGG	3 cut(s)	185, 1432, 1569
BcoDI	GTCTC	5 cut(s)	19, 389, 489, 897, 1629
BfaI	CTAG	5 cut(s)	41, 198, 1316, 1761, 2453
BfoI	RGCGCY	1 cut(s)	1023
BfuAI	ACCTGC	2 cut(s)	1119, 1948
BglII	AGATCT	1 cut(s)	2023
BlpI	GCTNAGC	2 cut(s)	1194, 1731
Bme1390I	CCNGG	6 cut(s)	185, 204, 312, 1163, 1432, 1569
Bme18I	GGWCC	3 cut(s)	358, 560, 2135
BmeT110I	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
BmgT120I	GGNCC	5 cut(s)	358, 560, 872, 2135, 2352
BmiI	GGNNCC	7 cut(s)	182, 360, 478, 807, 1520, 2380, 2484
BmrFI	CCNGG	6 cut(s)	185, 204, 312, 1163, 1432, 1569
BmsI	GCATC	5 cut(s)	874, 1385, 1393, 1554, 2548
BpiI	GAAGAC	1 cut(s)	2280
BpmI	CTGGAG	1 cut(s)	965
Bpu10I	CCTNAGC	2 cut(s)	1791, 2388
Bpu1102I	GCTNAGC	2 cut(s)	1194, 1731
Bpu14I	TTCGAA	1 cut(s)	2273
BpuEI	CTTGAG	2 cut(s)	1649, 2347
BpuMI	CCSGG	3 cut(s)	185, 1432, 1569
BsaAI	YACGTR	1 cut(s)	655
BsaJI	CCNNGG	7 cut(s)	311, 500, 532, 1162, 1407, 2316, 2409
BsaWI	WCCGGW	2 cut(s)	1296, 1504
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 1303, 1981, 2083
Bse118I	RCCGGY	2 cut(s)	1296, 2520
Bse1I	ACTGG	5 cut(s)	1684, 1902, 1931, 2486, 2525
Bse3DI	GCAATG	1 cut(s)	1234
BseAI	TCCGGA	1 cut(s)	1504
BseBI	CCWGG	3 cut(s)	204, 312, 1163
BseDI	CCNNGG	7 cut(s)	311, 500, 532, 1162, 1407, 2316, 2409
BseGI	GGATG	8 cut(s)	286, 328, 592, 837, 1471, 1672, 1713, 2326
BseLI	CCNNNNNNNGG	4 cut(s)	203, 1303, 1981, 2083
BseMI	GCAATG	1 cut(s)	1234
BseMII	CTCAG	8 cut(s)	273, 859, 945, 972, 1208, 1262, 1994, 2379
BseNI	ACTGG	5 cut(s)	1684, 1902, 1931, 2486, 2525
BseRI	GAGGAG	3 cut(s)	698, 1584, 1814
BseSI	GKGCMC	2 cut(s)	583, 1364
BseXI	GCAGC	8 cut(s)	35, 445, 1576, 2251, 2273, 2299, 2383, 2410
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	2409
Bsh1236I	CGCG	1 cut(s)	2318
BshFI	GGCC	6 cut(s)	531, 693, 874, 2354, 2408, 2524
BshNI	GGYRCC	1 cut(s)	476
BshTI	ACCGGT	1 cut(s)	1296
BsiHKAI	GWGCWC	3 cut(s)	793, 1071, 1617
BsiHKCI	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
BsiSI	CCGG	7 cut(s)	185, 1297, 1432, 1505, 1568, 1717, 2521
BsiWI	CGTACG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	4 cut(s)	203, 1303, 1981, 2083
BsmAI	GTCTC	5 cut(s)	19, 389, 489, 897, 1629
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	6 cut(s)	531, 693, 874, 2354, 2408, 2524
BsoBI	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
Bsp119I	TTCGAA	1 cut(s)	2273
Bsp1286I	GDGCHC	6 cut(s)	448, 583, 793, 1071, 1364, 1617
Bsp13I	TCCGGA	1 cut(s)	1504
Bsp1407I	TGTACA	1 cut(s)	1273
Bsp143I	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
Bsp1720I	GCTNAGC	2 cut(s)	1194, 1731
Bsp19I	CCATGG	1 cut(s)	1407
BspACI	CCGC	6 cut(s)	851, 870, 875, 2316, 2318, 2588
BspANI	GGCC	6 cut(s)	531, 693, 874, 2354, 2408, 2524
BspCNI	CTCAG	8 cut(s)	272, 858, 944, 973, 1207, 1261, 1993, 2380
BspEI	TCCGGA	1 cut(s)	1504
BspFNI	CGCG	1 cut(s)	2318
BspHI	TCATGA	1 cut(s)	1053
BspLI	GGNNCC	7 cut(s)	182, 360, 478, 807, 1520, 2380, 2484
BspMI	ACCTGC	2 cut(s)	1119, 1948
BspPI	GGATC	6 cut(s)	800, 813, 1463, 2477, 2490, 2555
BspT104I	TTCGAA	1 cut(s)	2273
BspT107I	GGYRCC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	1234
BsrFI	RCCGGY	2 cut(s)	1296, 2520
BsrGI	TGTACA	1 cut(s)	1273
BsrI	ACTGG	5 cut(s)	1684, 1902, 1931, 2486, 2525
BssAI	RCCGGY	2 cut(s)	1296, 2520
BssECI	CCNNGG	7 cut(s)	311, 500, 532, 1162, 1407, 2316, 2409
BssMI	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
BssT1I	CCWWGG	2 cut(s)	500, 1407
Bst2UI	CCWGG	3 cut(s)	204, 312, 1163
Bst4CI	ACNGT	8 cut(s)	400, 670, 941, 1176, 1623, 1695, 1847, 1868
Bst6I	CTCTTC	3 cut(s)	1110, 1791, 1976
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstAUI	TGTACA	1 cut(s)	1273
BstBAI	YACGTR	1 cut(s)	655
BstBI	TTCGAA	1 cut(s)	2273
BstC8I	GCNNGC	6 cut(s)	138, 872, 1281, 2037, 2101, 2105
BstDSI	CCRYGG	3 cut(s)	532, 1407, 2316
BstEII	GGTNACC	1 cut(s)	935
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	8 cut(s)	286, 328, 592, 837, 1471, 1672, 1713, 2326
BstFNI	CGCG	1 cut(s)	2318
BstH2I	RGCGCY	1 cut(s)	1023
BstHHI	GCGC	2 cut(s)	821, 1022
BstKTI	GATC	8 cut(s)	808, 1458, 1535, 1839, 2026, 2202, 2485, 2563
BstMAI	GTCTC	5 cut(s)	19, 389, 489, 897, 1629
BstMBI	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
BstMWI	GCNNNNNNNGC	8 cut(s)	303, 871, 971, 1148, 2393, 2405, 2414, 2423
BstNI	CCWGG	3 cut(s)	204, 312, 1163
BstNSI	RCATGY	2 cut(s)	974, 2596
BstPI	GGTNACC	1 cut(s)	935
BstSCI	CCNGG	6 cut(s)	183, 202, 310, 1161, 1430, 1567
BstSLI	GKGCMC	2 cut(s)	583, 1364
BstUI	CGCG	1 cut(s)	2318
BstV1I	GCAGC	8 cut(s)	35, 445, 1576, 2251, 2273, 2299, 2383, 2410
BstV2I	GAAGAC	1 cut(s)	2280
BstX2I	RGATCY	4 cut(s)	805, 1455, 2023, 2482
BstYI	RGATCY	4 cut(s)	805, 1455, 2023, 2482
BsuRI	GGCC	6 cut(s)	531, 693, 874, 2354, 2408, 2524
BtgI	CCRYGG	3 cut(s)	532, 1407, 2316
BtgZI	GCGATG	1 cut(s)	1275
BtsCI	GGATG	8 cut(s)	286, 328, 592, 837, 1471, 1672, 1713, 2326
BtsIMutI	CAGTG	4 cut(s)	282, 583, 675, 853
BveI	ACCTGC	2 cut(s)	1119, 1948
Cac8I	GCNNGC	6 cut(s)	138, 872, 1281, 2037, 2101, 2105
CciI	TCATGA	1 cut(s)	1053
CfoI	GCGC	2 cut(s)	821, 1022
Cfr10I	RCCGGY	2 cut(s)	1296, 2520
Cfr13I	GGNCC	5 cut(s)	358, 560, 872, 2135, 2352
Cfr42I	CCGCGG	1 cut(s)	2319
CseI	GACGC	3 cut(s)	222, 1922, 2423
Csp6I	GTAC	5 cut(s)	37, 652, 1274, 1757, 2467
CspAI	ACCGGT	1 cut(s)	1296
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	8 cut(s)	572, 856, 971, 1015, 1054, 1408, 1495, 2593
CviQI	GTAC	5 cut(s)	37, 652, 1274, 1757, 2467
DpnI	GATC	8 cut(s)	807, 1457, 1534, 1838, 2025, 2201, 2484, 2562
DpnII	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
DraI	TTTAAA	3 cut(s)	1135, 1339, 1873
DrdI	GACNNNNNNGTC	1 cut(s)	2525
DseDI	GACNNNNNNGTC	1 cut(s)	2525
EaeI	YGGCCR	2 cut(s)	529, 2522
Eam1104I	CTCTTC	3 cut(s)	1110, 1791, 1976
EarI	CTCTTC	3 cut(s)	1110, 1791, 1976
Ecl136II	GAGCTC	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	500, 1407
Eco147I	AGGCCT	1 cut(s)	2408
Eco24I	GRGCYC	2 cut(s)	448, 793
Eco47I	GGWCC	3 cut(s)	358, 560, 2135
Eco47III	AGCGCT	1 cut(s)	1021
Eco53kI	GAGCTC	1 cut(s)	791
Eco57I	CTGAAG	3 cut(s)	1014, 2031, 2439
Eco88I	CYCGRG	5 cut(s)	749, 1199, 1739, 1944, 2168
Eco91I	GGTNACC	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	791
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	560, 2135
EcoO65I	GGTNACC	1 cut(s)	935
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	202, 310, 1161
EcoT14I	CCWWGG	2 cut(s)	500, 1407
EcoT38I	GRGCYC	2 cut(s)	448, 793
ErhI	CCWWGG	2 cut(s)	500, 1407
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	8 cut(s)	575, 859, 974, 1018, 1057, 1411, 1498, 2596
FalI	AAGNNNNNCTT	4 cut(s)	1128, 1160, 2412, 2444
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	8 cut(s)	571, 855, 970, 1014, 1053, 1407, 1494, 2592
FauI	CCCGC	1 cut(s)	863
FauNDI	CATATG	1 cut(s)	795
FbaI	TGATCA	2 cut(s)	1836, 2199
FblI	GTMKAC	2 cut(s)	1936, 2214
FokI	GGATG	8 cut(s)	293, 335, 579, 844, 1478, 1679, 1700, 2333
FriOI	GRGCYC	2 cut(s)	448, 793
FspBI	CTAG	5 cut(s)	41, 198, 1316, 1761, 2453
FspI	TGCGCA	1 cut(s)	820
GlaI	GCGC	2 cut(s)	820, 1021
GsaI	CCCAGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	965
HaeII	RGCGCY	1 cut(s)	1023
HaeIII	GGCC	6 cut(s)	531, 693, 874, 2354, 2408, 2524
HapII	CCGG	7 cut(s)	185, 1297, 1432, 1505, 1568, 1717, 2521
HgaI	GACGC	3 cut(s)	222, 1922, 2423
HhaI	GCGC	2 cut(s)	821, 1022
Hin1II	CATG	8 cut(s)	575, 859, 974, 1018, 1057, 1411, 1498, 2596
Hin6I	GCGC	2 cut(s)	819, 1020
HinP1I	GCGC	2 cut(s)	819, 1020
HincII	GTYRAC	2 cut(s)	1677, 1937
HindII	GTYRAC	2 cut(s)	1677, 1937
HindIII	AAGCTT	1 cut(s)	1733
HpaII	CCGG	7 cut(s)	185, 1297, 1432, 1505, 1568, 1717, 2521
HphI	GGTGA	4 cut(s)	488, 1958, 2177, 2351
Hpy166II	GTNNAC	4 cut(s)	1677, 1937, 2215, 2469
Hpy8I	GTNNAC	4 cut(s)	1677, 1937, 2215, 2469
Hpy99I	CGWCG	1 cut(s)	1938
HpyAV	CCTTC	7 cut(s)	364, 617, 989, 1798, 1948, 2473, 2508
HpyCH4III	ACNGT	8 cut(s)	400, 670, 941, 1176, 1623, 1695, 1847, 1868
HpyCH4IV	ACGT	4 cut(s)	58, 654, 1358, 2009
HpyCH4V	TGCA	9 cut(s)	269, 403, 799, 887, 1376, 1922, 2125, 2261, 2426
HpyF10VI	GCNNNNNNNGC	8 cut(s)	303, 871, 971, 1148, 2393, 2405, 2414, 2423
HpySE526I	ACGT	4 cut(s)	58, 654, 1358, 2009
Hsp92II	CATG	8 cut(s)	575, 859, 974, 1018, 1057, 1411, 1498, 2596
HspAI	GCGC	2 cut(s)	819, 1020
Kpn2I	TCCGGA	1 cut(s)	1504
Ksp22I	TGATCA	2 cut(s)	1836, 2199
KspI	CCGCGG	1 cut(s)	2319
Kzo9I	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
LmnI	GCTCC	2 cut(s)	1597, 2068
Lsp1109I	GCAGC	8 cut(s)	35, 445, 1576, 2251, 2273, 2299, 2383, 2410
LweI	GCATC	5 cut(s)	874, 1385, 1393, 1554, 2548
MaeI	CTAG	5 cut(s)	41, 198, 1316, 1761, 2453
MaeII	ACGT	4 cut(s)	58, 654, 1358, 2009
MaeIII	GTNAC	4 cut(s)	335, 655, 935, 988
MalI	GATC	8 cut(s)	807, 1457, 1534, 1838, 2025, 2201, 2484, 2562
MboI	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
MfeI	CAATTG	3 cut(s)	2126, 2195, 2300
MflI	RGATCY	4 cut(s)	805, 1455, 2023, 2482
MhlI	GDGCHC	6 cut(s)	448, 583, 793, 1071, 1364, 1617
MlyI	GAGTC	2 cut(s)	332, 528
MmeI	TCCRAC	2 cut(s)	336, 1443
MroI	TCCGGA	1 cut(s)	1504
MroXI	GAANNNNTTC	1 cut(s)	192
MslI	CAYNNNNRTG	5 cut(s)	576, 1357, 1487, 1770, 2474
MspA1I	CMGCKG	4 cut(s)	473, 638, 2264, 2318
MspI	CCGG	7 cut(s)	185, 1297, 1432, 1505, 1568, 1717, 2521
MspR9I	CCNGG	6 cut(s)	185, 204, 312, 1163, 1432, 1569
MunI	CAATTG	3 cut(s)	2126, 2195, 2300
MvaI	CCWGG	3 cut(s)	204, 312, 1163
MvnI	CGCG	1 cut(s)	2318
MwoI	GCNNNNNNNGC	8 cut(s)	303, 871, 971, 1148, 2393, 2405, 2414, 2423
NciI	CCSGG	3 cut(s)	185, 1432, 1569
NcoI	CCATGG	1 cut(s)	1407
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
NlaIII	CATG	8 cut(s)	575, 859, 974, 1018, 1057, 1411, 1498, 2596
NlaIV	GGNNCC	7 cut(s)	182, 360, 478, 807, 1520, 2380, 2484
NmeAIII	GCCGAG	1 cut(s)	1930
NmuCI	GTSAC	2 cut(s)	335, 655
NsbI	TGCGCA	1 cut(s)	820
NspI	RCATGY	2 cut(s)	974, 2596
NspV	TTCGAA	1 cut(s)	2273
PaeR7I	CTCGAG	4 cut(s)	749, 1199, 1739, 1944
PagI	TCATGA	1 cut(s)	1053
PceI	AGGCCT	1 cut(s)	2408
PciI	ACATGT	1 cut(s)	2592
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 656, 1942
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	8 cut(s)	122, 169, 493, 508, 1435, 1645, 1879, 2508
Pfl23II	CGTACG	1 cut(s)	651
PfoI	TCCNGGA	1 cut(s)	1430
PinAI	ACCGGT	1 cut(s)	1296
PleI	GAGTC	2 cut(s)	332, 527
PpsI	GAGTC	2 cut(s)	332, 527
Ppu21I	YACGTR	1 cut(s)	655
PpuMI	RGGWCCY	2 cut(s)	560, 2135
PscI	ACATGT	1 cut(s)	2592
Psp124BI	GAGCTC	1 cut(s)	793
Psp5II	RGGWCCY	2 cut(s)	560, 2135
Psp6I	CCWGG	3 cut(s)	202, 310, 1161
PspEI	GGTNACC	1 cut(s)	935
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	3 cut(s)	202, 310, 1161
PspLI	CGTACG	1 cut(s)	651
PspN4I	GGNNCC	7 cut(s)	182, 360, 478, 807, 1520, 2380, 2484
PspPI	GGNCC	5 cut(s)	358, 560, 872, 2135, 2352
PspPPI	RGGWCCY	2 cut(s)	560, 2135
PsrI	GAACNNNNNNTAC	2 cut(s)	1257, 1289
PsuI	RGATCY	4 cut(s)	805, 1455, 2023, 2482
PvuII	CAGCTG	3 cut(s)	473, 638, 2264
RsaI	GTAC	5 cut(s)	38, 653, 1275, 1758, 2468
RsaNI	GTAC	5 cut(s)	37, 652, 1274, 1757, 2467
RseI	CAYNNNNRTG	5 cut(s)	576, 1357, 1487, 1770, 2474
SacI	GAGCTC	1 cut(s)	793
SacII	CCGCGG	1 cut(s)	2319
SalI	GTCGAC	1 cut(s)	1935
Sau3AI	GATC	8 cut(s)	805, 1455, 1532, 1836, 2023, 2199, 2482, 2560
Sau96I	GGNCC	5 cut(s)	358, 560, 872, 2135, 2352
SchI	GAGTC	2 cut(s)	332, 528
ScrFI	CCNGG	6 cut(s)	185, 204, 312, 1163, 1432, 1569
SduI	GDGCHC	6 cut(s)	448, 583, 793, 1071, 1364, 1617
SfaNI	GCATC	5 cut(s)	874, 1385, 1393, 1554, 2548
Sfr274I	CTCGAG	4 cut(s)	749, 1199, 1739, 1944
Sfr303I	CCGCGG	1 cut(s)	2319
SfuI	TTCGAA	1 cut(s)	2273
SgrBI	CCGCGG	1 cut(s)	2319
SinI	GGWCC	3 cut(s)	358, 560, 2135
SlaI	CTCGAG	4 cut(s)	749, 1199, 1739, 1944
SmiMI	CAYNNNNRTG	5 cut(s)	576, 1357, 1487, 1770, 2474
SmlI	CTYRAG	6 cut(s)	749, 1199, 1628, 1739, 1944, 2326
SmoI	CTYRAG	6 cut(s)	749, 1199, 1628, 1739, 1944, 2326
SseBI	AGGCCT	1 cut(s)	2408
SsiI	CCGC	6 cut(s)	851, 870, 875, 2316, 2318, 2588
SspI	AATATT	1 cut(s)	1028
SspMI	CTAG	5 cut(s)	41, 198, 1316, 1761, 2453
SstI	GAGCTC	1 cut(s)	793
StuI	AGGCCT	1 cut(s)	2408
StyD4I	CCNGG	6 cut(s)	183, 202, 310, 1161, 1430, 1567
StyI	CCWWGG	2 cut(s)	500, 1407
TaaI	ACNGT	8 cut(s)	400, 670, 941, 1176, 1623, 1695, 1847, 1868
TaiI	ACGT	4 cut(s)	61, 657, 1361, 2012
TaqI	TCGA	9 cut(s)	21, 750, 1200, 1579, 1740, 1768, 1936, 1945, 2273
TatI	WGTACW	2 cut(s)	1273, 2466
TauI	GCSGC	2 cut(s)	877, 2318
TfiI	GAWTC	8 cut(s)	122, 169, 493, 508, 1435, 1645, 1879, 2508
TscAI	CASTG	4 cut(s)	282, 583, 675, 853
TseFI	GTSAC	2 cut(s)	335, 655
TseI	GCWGC	8 cut(s)	48, 433, 1589, 2261, 2264, 2312, 2396, 2423
Tsp45I	GTSAC	2 cut(s)	335, 655
TspRI	CASTG	4 cut(s)	282, 583, 675, 853
VpaK11BI	GGWCC	3 cut(s)	358, 560, 2135
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	3 cut(s)	211, 909, 1370
XceI	RCATGY	2 cut(s)	974, 2596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XhoI	CTCGAG	4 cut(s)	749, 1199, 1739, 1944
XmiI	GTMKAC	2 cut(s)	1936, 2214
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	5 cut(s)	41, 198, 1316, 1761, 2453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.