Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

43495646 .. 43498636

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034480

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2991 bp

ATGGCGATCCCAAAACCAATGTCCAAGGAGGAGTTGGAGGACATAATCCTGCAGAAAATCTTTCTTGTATCACTCACCGAGCCCTCCGAACCCGATTCTCTAATTGTCTACTTGGAGGTGACGGCTGCAGAGATTCTCAGCGTAGGCAAGGAGATGAGGCTCAGTATAGACCTCATGGAGTTGATCCTAATCGATCGGCTTATGGGTAATTTCGGCTCTGTCGAACCACCTTTTCAGTACCTAGTTGGCTGCTACAAACGTGCCCATGATGAGTGTAAGAAGATTACTTCTGTGAAACATAAGGATTTGAGGTTTTATATGGAATCTATTATTAGGCAAGCCAAGAAGCTGTCGGTTTCGTATGGTAGGATTCACTTGGGGAACCCGGGAGCGTTTCCTAGTCCAGGTGGGAATTCAAATAACTCAGTAACCCCTTTGTTGCCGTTGATTTTCTCAGAGGTTGCAAATTCAGTGGATGGATTTGGAGGAAGCAGTAGTAGCCCACCTGGGTTTTTGGATGAGTTCTTTCGTGACTCGGATTTTGATATGTTGGACCCCATTTTGAAGGGTTTGTATGAAGAACTCACGGAGACTGTGCAAAACGTTTCGGCACTTGGAAACTTTCAGCAGCCATTGAGGGCTCTGGTGTTTTTGGTTAGTTTCCCAGCTGGTGCCAAGTCTCTTGTGAATCACCCAAGGTGGATTCCGAAAGGAGTATTGAATGGCCGCGATATTGAAAAGACTAGTATTTTAGGTCCTTTCTTTCATGTCAGTCCCCTGTCTGACCATCCTTTTTCTGTTAGTGAGTTCTTTTCAGAAGGTTCTAACACAGATGATAAATCTTCGTACGAGACGATTAAGACAGTGATTGACAATTTATATGATGGCCTCGCACAAGTTCTCCTCACGCTACTGAAAAATCCAGACACCCGCGAGAAAGTTCTCGAGTATCTTGCTGTGGTTATCAACAAGAACTCATCAAGAGCTCACATGCAAGTGGATCCTCTTTCCTGCGCAAGTTCGGGGATGTTTGTTAATCTCAGTGCTGTCATGCTTCGGCTTTGCGGGCCGCTTTTAGATGCAAACTTAACCAAAAGAGACAAAATTTCTCCGAAATATGTGCTCTCAGGTAACCGTCTGGAGTTGAGAGTTTTGACAGCTCTACATGCAACATCTGAGGAAGTTACTGAATGGATTAGTAAAGATAACATGAGCGCCCAATATTCTTTTAATTGTGAGTGCTTCTTCATGACTGCGAGGGTGCTCAATCTGGGTTTATTGAAAGCATTTTCTGACCATAAACATTTAGAACAGAACATTCGCAGGTCTAAAGAAGCACTTAATGCCATGAAAGACCTGGGTTCTCCACAGTTGAACACTAACATAGCTCAGCTCGAGATAGAAATAAAGTTGTTAGAACAGGAAAGGCATTGCTACGAAGCTCAGATAGTAAGGGATGAACCACTTGTACAGCAGGCGATTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGGCGGCTTGGTTGGTGGATTTAAAATGCCTCTGCCATCAACGTGCCCCGTAGAATTTGCATCTATGCCAGAGCATTTTGTGGAAGATGCCATGGAGTTGCTTTTATTTGCTTCCCGGATTCCAAAAGCATTTAGTGGGATCTTGTTGGATGATTTTATGAACTTCATAATAATGTTCATGGCAAGTCCGGAATATATCAGGAACCCTTATCTTAGATCAAAGATGGTTGAAGTCCTCAACTGCTTGATGCCACGTGGAAGTCAACCATCTGCTGCTCCTCCTACCCTGTTCAAAGGGCACAAACTGTCTCTTGAGTATCTTGTAAGGAATCTCTTGAAACTATATGTGGATGTTGAGTTGACTGGCTCTCACACACAGTTCTTTGACAAGTTTAACATCCGGCACAAAATTGCTAAGCTTCTCGAGTATCTGTGGCAAGTACCTAGTCATCGAAATGCTTGGAAAAAGTTTGCTAAGGAAGAGGAGAAGGGAGTATATTTGAATTACTTGAACTTCTTGATCAATGACAGTATATATCTTCTGGATAACAGTTTTAAAACGATTCTTGAACACAAACAACTGGAAGCCGAGATGTCAAACAATGCAGAATGGAAGTGTCGACCTGCTCAAGAGAGGAAGGAGAAAGCTCGCCTCTTCCACTCGCAGGAAAAGAGTATCCAAACTCACTTGACGTTCGCAAATGAAGATCTGAATACGCTGGCATTTACTTCAGAACATATTACAGCTCCTTTCCTACTCCCAGAGATGGTTGAAAGGGTGGCAAGCATGCTGAATTATTTTTTGTTGCAATTGGTAGGTCCTGAAAGAAAATCTCTTAATTTGAAAGACCCCGAGAAATGTAAGTTTCACCCAGAGCAATTGATCAAGCAGATTGTCTACATATATGTTCATCTGGCAAGAGGCGATACAGACAATACTTTTGCAGCTGCCATCTCAAAAGATGGTAGGTCTTACAATGACCAACTGTTTAGTGCTGCCGCGGATGTCTTAAGGAAAATTGAAGATGGGAGGGTCATACAAGAGTTTGTTGAGCTTGGTTCCAAAGCCGAGGTTGCTGCTTCGGAGGCCTTGGACGCTGAAGCTGCACTTGGAGATATACCAGATGAGTTCCTAGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCCTACCTTCTTCAAGAATCACAATAGATCGGCCAGTCATTCAGAGGCATCTTCTTAGTGATAATACTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCAGACGATGAATTGAAAGCAAAAATACAAGAGTTCATTAGGTCCCAAGAGTCCAAGAGTGGGAAAAGCCTAAGCATGCAGAGCAGCAAGACTACAATACCAATTCACCACAATATATGGTCTGCTAGTTTGATTACATCTTTGTTAATTTTAACAATACTGTTAGTTTTTGTGATATGGATGTATGCTTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

997

Amino Acids

112.73

Weight (kDa)

5.82

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	251 - 861	1.9e-184	Ubiquitin elongating factor core
U-box	PF04564	877 - 948	1.6e-30	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1015
Acc36I	ACCTGC	2 cut(s)	1314, 2143
AccB1I	GGYRCC	1 cut(s)	671
AccI	GTMKAC	3 cut(s)	108, 2131, 2409
AccII	CGCG	3 cut(s)	729, 933, 2513
AccIII	TCCGGA	1 cut(s)	1699
AciI	CCGC	8 cut(s)	727, 931, 1065, 1070, 1515, 2511, 2513, 2780
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	7 cut(s)	178, 995, 1008, 1658, 2669, 2682, 2747
AcoI	YGGCCR	2 cut(s)	724, 2714
AcsI	RAATTY	4 cut(s)	412, 466, 1104, 1565
AcuI	CTGAAG	2 cut(s)	2226, 2631
AcvI	CACGTG	1 cut(s)	1766
AfaI	GTAC	5 cut(s)	239, 848, 1470, 1953, 2660
AfiI	CCNNNNNNNGG	5 cut(s)	404, 1498, 2176, 2278, 2853
AflII	CTTAAG	1 cut(s)	2521
AflIII	ACRYGT	1 cut(s)	2784
AgeI	ACCGGT	1 cut(s)	1491
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	3 cut(s)	403, 505, 1356
AjuI	GAANNNNNNNTTGG	2 cut(s)	2604, 2636
Alw21I	GWGCWC	3 cut(s)	988, 1125, 1266
Alw26I	GTCTC	5 cut(s)	584, 684, 845, 1092, 1824
AlwI	GGATC	7 cut(s)	178, 995, 1008, 1658, 2669, 2682, 2747
Ama87I	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
Aor13HI	TCCGGA	1 cut(s)	1699
AoxI	GGCC	5 cut(s)	724, 886, 1067, 2598, 2714
ApoI	RAATTY	4 cut(s)	412, 466, 1104, 1565
ArsI	GACNNNNNNTTYG	5 cut(s)	37, 524, 556, 2435, 2467
AsiGI	ACCGGT	1 cut(s)	1491
AspLEI	GCGC	2 cut(s)	1016, 1217
AspS9I	GGNCC	5 cut(s)	553, 755, 1067, 2330, 2835
AsuC2I	CCSGG	3 cut(s)	386, 387, 1627
AsuHPI	GGTGA	5 cut(s)	67, 130, 683, 2372, 2891
AvaI	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
AvaII	GGWCC	4 cut(s)	553, 755, 2330, 2835
BaeGI	GKGCMC	3 cut(s)	265, 1559, 1812
BamHI	GGATCC	2 cut(s)	1000, 2674
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	3 cut(s)	84, 643, 988
BbrPI	CACGTG	1 cut(s)	1766
Bbv12I	GWGCWC	3 cut(s)	988, 1125, 1266
BceAI	ACGGC	2 cut(s)	138, 427
BcgI	CGANNNNNNTGC	6 cut(s)	935, 969, 1102, 1136, 2570, 2604
BciT130I	CCWGG	3 cut(s)	405, 507, 1358
BciVI	GTATCC	1 cut(s)	2198
BclI	TGATCA	2 cut(s)	2031, 2394
BcnI	CCSGG	3 cut(s)	386, 387, 1627
BcoDI	GTCTC	5 cut(s)	584, 684, 845, 1092, 1824
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	7 cut(s)	242, 399, 744, 1511, 1956, 2645, 2919
BfmI	CTRYAG	2 cut(s)	50, 126
BfoI	RGCGCY	1 cut(s)	1218
BfrI	CTTAAG	1 cut(s)	2521
BfuAI	ACCTGC	2 cut(s)	1314, 2143
BfuI	GTATCC	1 cut(s)	2198
BglII	AGATCT	1 cut(s)	2218
BlpI	GCTNAGC	2 cut(s)	1389, 1926
Bme1390I	CCNGG	6 cut(s)	386, 387, 405, 507, 1358, 1627
Bme18I	GGWCC	4 cut(s)	553, 755, 2330, 2835
BmeT110I	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
BmgT120I	GGNCC	5 cut(s)	553, 755, 1067, 2330, 2835
BmiI	GGNNCC	8 cut(s)	383, 555, 673, 1002, 1715, 2572, 2676, 2837
BmrFI	CCNGG	6 cut(s)	386, 387, 405, 507, 1358, 1627
BmsI	GCATC	5 cut(s)	1069, 1580, 1588, 1749, 2740
BpmI	CTGGAG	1 cut(s)	1160
Bpu10I	CCTNAGC	2 cut(s)	1986, 2864
Bpu1102I	GCTNAGC	2 cut(s)	1389, 1926
BpuEI	CTTGAG	2 cut(s)	1844, 2124
BpuMI	CCSGG	3 cut(s)	386, 387, 1627
Bsa29I	ATCGAT	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	1766
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	9 cut(s)	24, 385, 506, 695, 1357, 1602, 2511, 2580, 2601
BsaWI	WCCGGW	2 cut(s)	1491, 1699
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	5 cut(s)	404, 1498, 2176, 2278, 2853
Bse118I	RCCGGY	1 cut(s)	1491
Bse1I	ACTGG	4 cut(s)	1879, 2097, 2678, 2717
Bse3DI	GCAATG	1 cut(s)	1429
Bse8I	GATNNNNATC	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	1699
BseBI	CCWGG	3 cut(s)	405, 507, 1358
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	9 cut(s)	24, 385, 506, 695, 1357, 1602, 2511, 2580, 2601
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	5 cut(s)	404, 1498, 2176, 2278, 2853
BseMI	GCAATG	1 cut(s)	1429
BseMII	CTCAG	9 cut(s)	151, 175, 438, 468, 1054, 1140, 1167, 1403, 1457
BseNI	ACTGG	4 cut(s)	1879, 2097, 2678, 2717
BseRI	GAGGAG	4 cut(s)	44, 893, 1779, 2009
BseSI	GKGCMC	3 cut(s)	265, 1559, 1812
BseYI	CCCAGC	1 cut(s)	664
BsgI	GTGCAG	1 cut(s)	2601
Bsh1236I	CGCG	3 cut(s)	729, 933, 2513
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	5 cut(s)	726, 888, 1069, 2600, 2716
BshNI	GGYRCC	1 cut(s)	671
BshTI	ACCGGT	1 cut(s)	1491
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	3 cut(s)	988, 1125, 1266
BsiHKCI	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
BsiSI	CCGG	5 cut(s)	386, 1492, 1627, 1700, 1912
BsiWI	CGTACG	1 cut(s)	846
BslFI	GGGAC	2 cut(s)	759, 2821
BslI	CCNNNNNNNGG	5 cut(s)	404, 1498, 2176, 2278, 2853
BsmAI	GTCTC	5 cut(s)	584, 684, 845, 1092, 1824
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	759, 2821
BsnI	GGCC	5 cut(s)	726, 888, 1069, 2600, 2716
BsoBI	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
Bsp1286I	GDGCHC	8 cut(s)	84, 265, 643, 988, 1125, 1266, 1559, 1812
Bsp13I	TCCGGA	1 cut(s)	1699
Bsp1407I	TGTACA	1 cut(s)	1468
Bsp1720I	GCTNAGC	2 cut(s)	1389, 1926
Bsp19I	CCATGG	1 cut(s)	1602
BspACI	CCGC	8 cut(s)	727, 931, 1065, 1070, 1515, 2511, 2513, 2780
BspANI	GGCC	5 cut(s)	726, 888, 1069, 2600, 2716
BspCNI	CTCAG	9 cut(s)	150, 174, 437, 467, 1053, 1139, 1168, 1402, 1456
BspDI	ATCGAT	1 cut(s)	192
BspEI	TCCGGA	1 cut(s)	1699
BspFNI	CGCG	3 cut(s)	729, 933, 2513
BspHI	TCATGA	1 cut(s)	1248
BspLI	GGNNCC	8 cut(s)	383, 555, 673, 1002, 1715, 2572, 2676, 2837
BspMAI	CTGCAG	2 cut(s)	54, 130
BspMI	ACCTGC	2 cut(s)	1314, 2143
BspPI	GGATC	7 cut(s)	178, 995, 1008, 1658, 2669, 2682, 2747
BspT107I	GGYRCC	1 cut(s)	671
BspTI	CTTAAG	1 cut(s)	2521
BsrDI	GCAATG	1 cut(s)	1429
BsrFI	RCCGGY	1 cut(s)	1491
BsrGI	TGTACA	1 cut(s)	1468
BsrI	ACTGG	4 cut(s)	1879, 2097, 2678, 2717
BssAI	RCCGGY	1 cut(s)	1491
BssECI	CCNNGG	9 cut(s)	24, 385, 506, 695, 1357, 1602, 2511, 2580, 2601
BssT1I	CCWWGG	4 cut(s)	24, 695, 1602, 2601
Bst2UI	CCWGG	3 cut(s)	405, 507, 1358
Bst6I	CTCTTC	2 cut(s)	1986, 2171
BstAFI	CTTAAG	1 cut(s)	2521
BstAPI	GCANNNNNTGC	1 cut(s)	1343
BstAUI	TGTACA	1 cut(s)	1468
BstBAI	YACGTR	1 cut(s)	1766
BstC8I	GCNNGC	8 cut(s)	339, 1067, 1476, 2161, 2232, 2296, 2300, 2870
BstDSI	CCRYGG	2 cut(s)	1602, 2511
BstEII	GGTNACC	1 cut(s)	1130
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstFNI	CGCG	3 cut(s)	729, 933, 2513
BstH2I	RGCGCY	1 cut(s)	1218
BstHHI	GCGC	2 cut(s)	1016, 1217
BstMAI	GTCTC	5 cut(s)	584, 684, 845, 1092, 1824
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	9 cut(s)	498, 1066, 1166, 1343, 2585, 2597, 2606, 2615, 2874
BstNI	CCWGG	3 cut(s)	405, 507, 1358
BstNSI	RCATGY	5 cut(s)	994, 1169, 2302, 2788, 2872
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	6 cut(s)	384, 385, 403, 505, 1356, 1625
BstSFI	CTRYAG	2 cut(s)	50, 126
BstSLI	GKGCMC	3 cut(s)	265, 1559, 1812
BstUI	CGCG	3 cut(s)	729, 933, 2513
BstX2I	RGATCY	4 cut(s)	1000, 1650, 2218, 2674
BstYI	RGATCY	4 cut(s)	1000, 1650, 2218, 2674
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	2198
BsuRI	GGCC	5 cut(s)	726, 888, 1069, 2600, 2716
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	1602, 2511
BtsIMutI	CAGTG	3 cut(s)	477, 870, 1048
BveI	ACCTGC	2 cut(s)	1314, 2143
Cac8I	GCNNGC	8 cut(s)	339, 1067, 1476, 2161, 2232, 2296, 2300, 2870
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	2 cut(s)	1016, 1217
Cfr10I	RCCGGY	1 cut(s)	1491
Cfr13I	GGNCC	5 cut(s)	553, 755, 1067, 2330, 2835
Cfr42I	CCGCGG	1 cut(s)	2514
Cfr9I	CCCGGG	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	2615
Csp6I	GTAC	5 cut(s)	238, 847, 1469, 1952, 2659
CspAI	ACCGGT	1 cut(s)	1491
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviQI	GTAC	5 cut(s)	238, 847, 1469, 1952, 2659
DraI	TTTAAA	2 cut(s)	1534, 2068
EaeI	YGGCCR	2 cut(s)	724, 2714
Eam1104I	CTCTTC	2 cut(s)	1986, 2171
EarI	CTCTTC	2 cut(s)	1986, 2171
Ecl136II	GAGCTC	1 cut(s)	986
Eco130I	CCWWGG	4 cut(s)	24, 695, 1602, 2601
Eco147I	AGGCCT	1 cut(s)	2600
Eco24I	GRGCYC	3 cut(s)	84, 643, 988
Eco47I	GGWCC	4 cut(s)	553, 755, 2330, 2835
Eco53kI	GAGCTC	1 cut(s)	986
Eco57I	CTGAAG	2 cut(s)	2226, 2631
Eco72I	CACGTG	1 cut(s)	1766
Eco88I	CYCGRG	5 cut(s)	385, 944, 1394, 1934, 2363
Eco91I	GGTNACC	1 cut(s)	1130
EcoICRI	GAGCTC	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	3 cut(s)	755, 2330, 2835
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	3 cut(s)	403, 505, 1356
EcoT14I	CCWWGG	4 cut(s)	24, 695, 1602, 2601
EcoT38I	GRGCYC	3 cut(s)	84, 643, 988
ErhI	CCWWGG	4 cut(s)	24, 695, 1602, 2601
Esp3I	CGTCTC	1 cut(s)	845
FalI	AAGNNNNNCTT	4 cut(s)	1323, 1355, 2604, 2636
FaqI	GGGAC	2 cut(s)	759, 2821
FauI	CCCGC	2 cut(s)	938, 1058
FbaI	TGATCA	2 cut(s)	2031, 2394
FblI	GTMKAC	3 cut(s)	108, 2131, 2409
FriOI	GRGCYC	3 cut(s)	84, 643, 988
FspBI	CTAG	7 cut(s)	242, 399, 744, 1511, 1956, 2645, 2919
FspI	TGCGCA	1 cut(s)	1015
GlaI	GCGC	2 cut(s)	1015, 1216
GsaI	CCCAGC	1 cut(s)	668
GsuI	CTGGAG	1 cut(s)	1160
HaeII	RGCGCY	1 cut(s)	1218
HaeIII	GGCC	5 cut(s)	726, 888, 1069, 2600, 2716
HapII	CCGG	5 cut(s)	386, 1492, 1627, 1700, 1912
HgaI	GACGC	1 cut(s)	2615
HhaI	GCGC	2 cut(s)	1016, 1217
Hin6I	GCGC	2 cut(s)	1014, 1215
HinP1I	GCGC	2 cut(s)	1014, 1215
HincII	GTYRAC	3 cut(s)	1775, 1872, 2132
HindII	GTYRAC	3 cut(s)	1775, 1872, 2132
HindIII	AAGCTT	1 cut(s)	1928
HpaII	CCGG	5 cut(s)	386, 1492, 1627, 1700, 1912
HphI	GGTGA	5 cut(s)	67, 130, 683, 2372, 2891
Hpy166II	GTNNAC	6 cut(s)	109, 1775, 1872, 2132, 2410, 2661
Hpy8I	GTNNAC	6 cut(s)	109, 1775, 1872, 2132, 2410, 2661
HpyAV	CCTTC	6 cut(s)	559, 812, 1993, 2143, 2665, 2700
HpyCH4IV	ACGT	5 cut(s)	259, 603, 1553, 1765, 2204
HpyF10VI	GCNNNNNNNGC	9 cut(s)	498, 1066, 1166, 1343, 2585, 2597, 2606, 2615, 2874
HpySE526I	ACGT	5 cut(s)	259, 603, 1553, 1765, 2204
HspAI	GCGC	2 cut(s)	1014, 1215
Kpn2I	TCCGGA	1 cut(s)	1699
Ksp22I	TGATCA	2 cut(s)	2031, 2394
KspI	CCGCGG	1 cut(s)	2514
LmnI	GCTCC	3 cut(s)	389, 1792, 2263
LweI	GCATC	5 cut(s)	1069, 1580, 1588, 1749, 2740
MaeI	CTAG	7 cut(s)	242, 399, 744, 1511, 1956, 2645, 2919
MaeII	ACGT	5 cut(s)	259, 603, 1553, 1765, 2204
MaeIII	GTNAC	5 cut(s)	118, 427, 530, 1130, 1183
MfeI	CAATTG	2 cut(s)	2321, 2390
MflI	RGATCY	4 cut(s)	1000, 1650, 2218, 2674
MhlI	GDGCHC	8 cut(s)	84, 265, 643, 988, 1125, 1266, 1559, 1812
MlyI	GAGTC	2 cut(s)	527, 2852
MmeI	TCCRAC	3 cut(s)	15, 531, 1638
MroI	TCCGGA	1 cut(s)	1699
MslI	CAYNNNNRTG	5 cut(s)	995, 1552, 1682, 1965, 2666
MspA1I	CMGCKG	3 cut(s)	668, 2459, 2513
MspCI	CTTAAG	1 cut(s)	2521
MspI	CCGG	5 cut(s)	386, 1492, 1627, 1700, 1912
MspR9I	CCNGG	6 cut(s)	386, 387, 405, 507, 1358, 1627
MunI	CAATTG	2 cut(s)	2321, 2390
MvaI	CCWGG	3 cut(s)	405, 507, 1358
MvnI	CGCG	3 cut(s)	729, 933, 2513
MwoI	GCNNNNNNNGC	9 cut(s)	498, 1066, 1166, 1343, 2585, 2597, 2606, 2615, 2874
NciI	CCSGG	3 cut(s)	386, 387, 1627
NcoI	CCATGG	1 cut(s)	1602
NlaIV	GGNNCC	8 cut(s)	383, 555, 673, 1002, 1715, 2572, 2676, 2837
NmeAIII	GCCGAG	2 cut(s)	2125, 2605
NmuCI	GTSAC	2 cut(s)	118, 530
NsbI	TGCGCA	1 cut(s)	1015
NspI	RCATGY	5 cut(s)	994, 1169, 2302, 2788, 2872
PaeI	GCATGC	2 cut(s)	2302, 2872
PaeR7I	CTCGAG	3 cut(s)	944, 1394, 1934
PagI	TCATGA	1 cut(s)	1248
PceI	AGGCCT	1 cut(s)	2600
PciI	ACATGT	1 cut(s)	2784
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 851
Pfl23II	CGTACG	1 cut(s)	846
PfoI	TCCNGGA	1 cut(s)	1625
PinAI	ACCGGT	1 cut(s)	1491
Ple19I	CGATCG	1 cut(s)	196
PleI	GAGTC	2 cut(s)	527, 2851
PmaCI	CACGTG	1 cut(s)	1766
PmlI	CACGTG	1 cut(s)	1766
PpsI	GAGTC	2 cut(s)	527, 2851
Ppu21I	YACGTR	1 cut(s)	1766
PpuMI	RGGWCCY	3 cut(s)	755, 2330, 2835
PscI	ACATGT	1 cut(s)	2784
Psp124BI	GAGCTC	1 cut(s)	988
Psp1406I	AACGTT	1 cut(s)	603
Psp5II	RGGWCCY	3 cut(s)	755, 2330, 2835
Psp6I	CCWGG	3 cut(s)	403, 505, 1356
PspCI	CACGTG	1 cut(s)	1766
PspEI	GGTNACC	1 cut(s)	1130
PspFI	CCCAGC	1 cut(s)	664
PspGI	CCWGG	3 cut(s)	403, 505, 1356
PspLI	CGTACG	1 cut(s)	846
PspN4I	GGNNCC	8 cut(s)	383, 555, 673, 1002, 1715, 2572, 2676, 2837
PspPI	GGNCC	5 cut(s)	553, 755, 1067, 2330, 2835
PspPPI	RGGWCCY	3 cut(s)	755, 2330, 2835
PsrI	GAACNNNNNNTAC	2 cut(s)	1452, 1484
PstI	CTGCAG	2 cut(s)	54, 130
PsuI	RGATCY	4 cut(s)	1000, 1650, 2218, 2674
PvuI	CGATCG	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	668, 2459
RsaI	GTAC	5 cut(s)	239, 848, 1470, 1953, 2660
RsaNI	GTAC	5 cut(s)	238, 847, 1469, 1952, 2659
RseI	CAYNNNNRTG	5 cut(s)	995, 1552, 1682, 1965, 2666
SacI	GAGCTC	1 cut(s)	988
SacII	CCGCGG	1 cut(s)	2514
SalI	GTCGAC	1 cut(s)	2130
Sau96I	GGNCC	5 cut(s)	553, 755, 1067, 2330, 2835
SchI	GAGTC	2 cut(s)	527, 2852
ScrFI	CCNGG	6 cut(s)	386, 387, 405, 507, 1358, 1627
SduI	GDGCHC	8 cut(s)	84, 265, 643, 988, 1125, 1266, 1559, 1812
SfaNI	GCATC	5 cut(s)	1069, 1580, 1588, 1749, 2740
SfcI	CTRYAG	2 cut(s)	50, 126
Sfr274I	CTCGAG	3 cut(s)	944, 1394, 1934
Sfr303I	CCGCGG	1 cut(s)	2514
SgrBI	CCGCGG	1 cut(s)	2514
SinI	GGWCC	4 cut(s)	553, 755, 2330, 2835
SlaI	CTCGAG	3 cut(s)	944, 1394, 1934
SmaI	CCCGGG	1 cut(s)	387
SmiMI	CAYNNNNRTG	5 cut(s)	995, 1552, 1682, 1965, 2666
SmlI	CTYRAG	6 cut(s)	944, 1394, 1823, 1934, 2139, 2521
SmoI	CTYRAG	6 cut(s)	944, 1394, 1823, 1934, 2139, 2521
SpeI	ACTAGT	1 cut(s)	743
SphI	GCATGC	2 cut(s)	2302, 2872
SseBI	AGGCCT	1 cut(s)	2600
SsiI	CCGC	8 cut(s)	727, 931, 1065, 1070, 1515, 2511, 2513, 2780
SspI	AATATT	1 cut(s)	1223
SspMI	CTAG	7 cut(s)	242, 399, 744, 1511, 1956, 2645, 2919
SstI	GAGCTC	1 cut(s)	988
StuI	AGGCCT	1 cut(s)	2600
StyD4I	CCNGG	6 cut(s)	384, 385, 403, 505, 1356, 1625
StyI	CCWWGG	4 cut(s)	24, 695, 1602, 2601
TaiI	ACGT	5 cut(s)	262, 606, 1556, 1768, 2207
TaqI	TCGA	7 cut(s)	192, 222, 945, 1395, 1935, 1963, 2131
TatI	WGTACW	2 cut(s)	1468, 2658
TauI	GCSGC	4 cut(s)	729, 1072, 1518, 2513
TscAI	CASTG	3 cut(s)	477, 870, 1048
TseFI	GTSAC	2 cut(s)	118, 530
Tsp45I	GTSAC	2 cut(s)	118, 530
TspGWI	ACGGA	1 cut(s)	602
TspMI	CCCGGG	1 cut(s)	385
TspRI	CASTG	3 cut(s)	477, 870, 1048
Vha464I	CTTAAG	1 cut(s)	2521
VpaK11BI	GGWCC	4 cut(s)	553, 755, 2330, 2835
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	4 cut(s)	412, 466, 1104, 1565
XceI	RCATGY	5 cut(s)	994, 1169, 2302, 2788, 2872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	31, 1354
XhoI	CTCGAG	3 cut(s)	944, 1394, 1934
XmaI	CCCGGG	1 cut(s)	385
XmiI	GTMKAC	3 cut(s)	108, 2131, 2409
XspI	CTAG	7 cut(s)	242, 399, 744, 1511, 1956, 2645, 2919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.