Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Forward (+)

82200055 .. 82206447

Gene Structure 6393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG590900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGTGCATATGGTTTACTTGGCAGCAGTGCTTTTCAGAAAATTCTAAGGATAGTGATCTGCGATCTTCGTACGTCACAATAAAGACACTTACGAATAGTCTATATGACGGCCTCGCAGAAGTTCTCCTCAAACTATTAAAAAATGCAGAGACCCGTGAGAGTGTTCTTGAGTATCTTGCTGAGGTTATCAACAAAAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGACTTTGCGAGCCATTTCTGGATCCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTCTATGGTGACCGTCTGGAGTTAAGAGGTTTGACTGCTCTACATGCATCATCTGAAGAAGTTACTGAATGGATTAACAAAGATAGTCTCGGGAATGCTGGTGGTGATGGTCAAAATCGCCTTTCACAATCCCAAGAAGCCACCAGCTCTGGCAGTAATATATCTCAACCTTCTAACATGAAGCCAAGCAGCGAAAAATCTAAATCATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTGCTCAACCTGGGTTTATTGAAAGCACTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGTCTGAAGATACACTTAAAGCCTTGAAAAGACAGGCACCTTCTCCTCAATTGAAGATTGATATAGCTCGCCTTGAGAAAGAGTTAGAGTTGTATAAACAGGAAAAGCGTTGTCATGAAGCTCAGATACTCACGGATGAACCACTTTTAGAGCGTGCCCTTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTTTGCCGTCAACTTGCCCCGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTCGCTTCCCGGATGCCAAAAGCATTTCATGGGATCCTGTTGGATGAATTTATGAACTTTATTATAATGTTCATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAATTGCTTGATGCCGCGTCCAAGTCATCAATCACCTGCTGCTACAGCTGCTGCTGCTAGCCTGTTCGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTAGACATTGAATTCACTGGTTCTCATACACAGTTCTATGACAAGTTCAACATCCGCCACAATATTGCTGAACTTCTTGAATATCTTTGGCAAGTCCCCAGTCATCAAAATGCTTGGAAACAGATTGCTAGGGAAGAAGAGAAAGGCGTATATTTGAATTTCTTAAACTTCTTGATCAATGATAGTATATATCTTCTGGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCAAACACCGCAGAATGGGAGCGTAGACCCGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCACTCTCAAGAAAATATTATCCGAATTGATATGAAGTTAGCAAATGAAGATGTGAGTATGTTGGCATTTACTACAGAACAAATTACAGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCAAGTATGCTCAATTATTTTTTGTTGCAGTTAGTAGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCGGAGAAGTATGAGTTCCGCCCAAAGCAATTGCTTAAGCAGATTGTGTACATATATGTTAATCTGGCAAGAGGTGATACGGAAAATATCTTTCCAGCTGCTATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTCAGTGCTGCTGCAGATGTCCTAAGGAGAATTGGTGAAGATGGAAGGGTCATACAGGAGTTTGTTGAGCTTGGTTCCAAAGCCAAGGTTGCTGCTTCTGAGGCCATGGACGCTGAAGCTGTTCTTGGGGATATACCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCGGATAGTGATTTGAAGGCAAAAATACAAGAGTTTATTAGGTCGCAACAGTCGAAGCGCGGGGAAAGCCTTAGCATGCAGAGTGATAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

755

Amino Acids

86.36

Weight (kDa)

5.45

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	7 - 641	1.1e-195	Ubiquitin elongating factor core
U-box	PF04564	658 - 729	5.7e-30	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
AarI	CACCTGC	1 cut(s)	1120
AasI	GACNNNNNNGTC	1 cut(s)	2060
Acc36I	ACCTGC	1 cut(s)	1120
AccB1I	GGYRCC	2 cut(s)	685, 1149
AccBSI	CCGCTC	1 cut(s)	1478
AccI	GTMKAC	3 cut(s)	1200, 1471, 2052
AccII	CGCG	2 cut(s)	1093, 2196
AciI	CCGC	8 cut(s)	1091, 1252, 1455, 1476, 1501, 1720, 2123, 2196
AclWI	GGATC	9 cut(s)	218, 296, 309, 326, 973, 986, 2012, 2025, 2090
AcsI	RAATTY	7 cut(s)	40, 307, 893, 992, 1208, 1354, 1982
AcuI	CTGAAG	3 cut(s)	420, 675, 1974
AfaI	GTAC	4 cut(s)	71, 636, 1751, 2003
AfiI	CCNNNNNNNGG	2 cut(s)	826, 1461
AflII	CTTAAG	1 cut(s)	1736
AflIII	ACRYGT	1 cut(s)	2127
AgeI	ACCGGT	1 cut(s)	819
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	1947, 1979
AluBI	AGCT	8 cut(s)	492, 716, 770, 1124, 1598, 1799, 1909, 1958
AluI	AGCT	8 cut(s)	492, 716, 770, 1124, 1598, 1799, 1909, 1958
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	3 cut(s)	143, 437, 1164
AlwI	GGATC	9 cut(s)	218, 296, 309, 326, 973, 986, 2012, 2025, 2090
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	2 cut(s)	434, 1163
AoxI	GGCC	3 cut(s)	109, 1941, 2057
ApoI	RAATTY	7 cut(s)	40, 307, 893, 992, 1208, 1354, 1982
AsiGI	ACCGGT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	1959
AspLEI	GCGC	1 cut(s)	2196
AspS9I	GGNCC	1 cut(s)	1670
AsuC2I	CCSGG	2 cut(s)	955, 1703
AsuHPI	GGTGA	5 cut(s)	365, 461, 1101, 1787, 1886
AsuII	TTCGAA	1 cut(s)	1143
AsuNHI	GCTAGC	1 cut(s)	1133
AvaI	CYCGRG	2 cut(s)	434, 1163
AvaII	GGWCC	1 cut(s)	1670
AxyI	CCTNAGG	1 cut(s)	1862
BaeGI	GKGCMC	2 cut(s)	808, 1152
BamHI	GGATCC	3 cut(s)	301, 978, 2017
BanI	GGYRCC	2 cut(s)	685, 1149
BanII	GRGCYC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	759, 791
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	7 cut(s)	446, 820, 1057, 1612, 1808, 1874, 2121
BceAI	ACGGC	2 cut(s)	124, 859
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	1371
BcnI	CCSGG	2 cut(s)	955, 1703
BcoDI	GTCTC	3 cut(s)	143, 437, 1164
BfaI	CTAG	5 cut(s)	632, 839, 1134, 1326, 2247
BfmI	CTRYAG	3 cut(s)	1119, 1581, 1851
BfrI	CTTAAG	1 cut(s)	1736
BfuAI	ACCTGC	1 cut(s)	1120
Bme1390I	CCNGG	3 cut(s)	596, 955, 1703
Bme18I	GGWCC	1 cut(s)	1670
BmeT110I	CYCGRG	2 cut(s)	434, 1163
BmgT120I	GGNCC	1 cut(s)	1670
BmiI	GGNNCC	7 cut(s)	303, 687, 980, 1043, 1151, 1915, 2019
BmrFI	CCNGG	3 cut(s)	596, 955, 1703
BmrI	ACTGGG	1 cut(s)	1290
BmsI	GCATC	7 cut(s)	401, 637, 908, 916, 948, 1077, 2083
BmtI	GCTAGC	1 cut(s)	1137
BmuI	ACTGGG	1 cut(s)	1290
BpmI	CTGGAG	2 cut(s)	383, 1454
Bpu10I	CCTNAGC	2 cut(s)	180, 2207
Bpu14I	TTCGAA	1 cut(s)	1143
BpuEI	CTTGAG	4 cut(s)	188, 743, 1464, 1500
BpuMI	CCSGG	2 cut(s)	955, 1703
BsaBI	GATNNNNATC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	595, 888, 930, 1923, 1944
BsaWI	WCCGGW	2 cut(s)	819, 2137
BsaXI	ACNNNNNCTCC	2 cut(s)	1858, 1888
Bsc4I	CCNNNNNNNGG	2 cut(s)	826, 1461
Bse118I	RCCGGY	2 cut(s)	819, 2055
Bse1I	ACTGG	4 cut(s)	1219, 1296, 1437, 2021
Bse21I	CCTNAGG	1 cut(s)	1862
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	5 cut(s)	595, 888, 930, 1923, 1944
BseGI	GGATG	6 cut(s)	790, 963, 994, 1248, 1402, 1819
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	826, 1461
BseMII	CTCAG	6 cut(s)	171, 277, 785, 1431, 1605, 1929
BseNI	ACTGG	4 cut(s)	1219, 1296, 1437, 2021
BseRI	GAGGAG	2 cut(s)	116, 684
BseSI	GKGCMC	2 cut(s)	808, 1152
Bsh1236I	CGCG	2 cut(s)	1093, 2196
BshFI	GGCC	3 cut(s)	111, 1943, 2059
BshNI	GGYRCC	2 cut(s)	685, 1149
BshTI	ACCGGT	1 cut(s)	819
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	2 cut(s)	434, 1163
BsiSI	CCGG	5 cut(s)	820, 955, 1703, 2056, 2138
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	335, 1277
BslI	CCNNNNNNNGG	2 cut(s)	826, 1461
BsmAI	GTCTC	3 cut(s)	143, 437, 1164
BsmFI	GGGAC	2 cut(s)	335, 1277
BsmI	GAATGC	2 cut(s)	445, 569
BsnI	GGCC	3 cut(s)	111, 1943, 2059
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	2 cut(s)	434, 1163
Bsp119I	TTCGAA	1 cut(s)	1143
Bsp1286I	GDGCHC	4 cut(s)	211, 591, 808, 1152
Bsp1407I	TGTACA	1 cut(s)	1749
Bsp19I	CCATGG	2 cut(s)	930, 1944
BspACI	CCGC	8 cut(s)	1091, 1252, 1455, 1476, 1501, 1720, 2123, 2196
BspANI	GGCC	3 cut(s)	111, 1943, 2059
BspCNI	CTCAG	6 cut(s)	172, 276, 784, 1432, 1606, 1930
BspFNI	CGCG	2 cut(s)	1093, 2196
BspHI	TCATGA	2 cut(s)	573, 763
BspLI	GGNNCC	7 cut(s)	303, 687, 980, 1043, 1151, 1915, 2019
BspMAI	CTGCAG	1 cut(s)	1855
BspMI	ACCTGC	1 cut(s)	1120
BspOI	GCTAGC	1 cut(s)	1137
BspPI	GGATC	9 cut(s)	218, 296, 309, 326, 973, 986, 2012, 2025, 2090
BspT104I	TTCGAA	1 cut(s)	1143
BspT107I	GGYRCC	2 cut(s)	685, 1149
BspTI	CTTAAG	1 cut(s)	1736
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	1478
BsrFI	RCCGGY	2 cut(s)	819, 2055
BsrGI	TGTACA	1 cut(s)	1749
BsrI	ACTGG	4 cut(s)	1219, 1296, 1437, 2021
BssAI	RCCGGY	2 cut(s)	819, 2055
BssECI	CCNNGG	5 cut(s)	595, 888, 930, 1923, 1944
BssT1I	CCWWGG	3 cut(s)	930, 1923, 1944
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	6 cut(s)	359, 1158, 1230, 2050, 2108, 2187
Bst6I	CTCTTC	1 cut(s)	1329
BstAFI	CTTAAG	1 cut(s)	1736
BstAUI	TGTACA	1 cut(s)	1749
BstBI	TTCGAA	1 cut(s)	1143
BstC8I	GCNNGC	5 cut(s)	290, 718, 804, 1135, 2213
BstDSI	CCRYGG	3 cut(s)	888, 930, 1944
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	6 cut(s)	790, 963, 994, 1248, 1402, 1819
BstFNI	CGCG	2 cut(s)	1093, 2196
BstHHI	GCGC	1 cut(s)	2196
BstMAI	GTCTC	3 cut(s)	143, 437, 1164
BstMWI	GCNNNNNNNGC	8 cut(s)	389, 1121, 1124, 1130, 1928, 1940, 1949, 2202
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	5 cut(s)	253, 392, 646, 2131, 2215
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	594, 953, 1701
BstSFI	CTRYAG	3 cut(s)	1119, 1581, 1851
BstSLI	GKGCMC	2 cut(s)	808, 1152
BstUI	CGCG	2 cut(s)	1093, 2196
BstX2I	RGATCY	3 cut(s)	301, 978, 2017
BstYI	RGATCY	3 cut(s)	301, 978, 2017
Bsu36I	CCTNAGG	1 cut(s)	1862
BsuRI	GGCC	3 cut(s)	111, 1943, 2059
BtgI	CCRYGG	3 cut(s)	888, 930, 1944
BtsCI	GGATG	6 cut(s)	790, 963, 994, 1248, 1402, 1819
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	4 cut(s)	32, 271, 1212, 1849
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	5 cut(s)	290, 718, 804, 1135, 2213
CaiI	CAGNNNCTG	1 cut(s)	1127
CciI	TCATGA	2 cut(s)	573, 763
CfoI	GCGC	1 cut(s)	2196
Cfr10I	RCCGGY	2 cut(s)	819, 2055
Cfr13I	GGNCC	1 cut(s)	1670
CseI	GACGC	2 cut(s)	1082, 1958
Csp6I	GTAC	4 cut(s)	70, 635, 1750, 2002
CspAI	ACCGGT	1 cut(s)	819
CviQI	GTAC	4 cut(s)	70, 635, 1750, 2002
DraI	TTTAAA	1 cut(s)	862
DrdI	GACNNNNNNGTC	1 cut(s)	2060
DseDI	GACNNNNNNGTC	1 cut(s)	2060
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
EciI	GGCGGA	2 cut(s)	1241, 1709
Eco130I	CCWWGG	3 cut(s)	930, 1923, 1944
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	1670
Eco57I	CTGAAG	3 cut(s)	420, 675, 1974
Eco81I	CCTNAGG	1 cut(s)	1862
Eco88I	CYCGRG	2 cut(s)	434, 1163
Eco91I	GGTNACC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	1670
EcoO65I	GGTNACC	1 cut(s)	353
EcoRI	GAATTC	2 cut(s)	1208, 1982
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	3 cut(s)	930, 1923, 1944
EcoT22I	ATGCAT	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	930, 1923, 1944
FalI	AAGNNNNNCTT	4 cut(s)	648, 680, 1947, 1979
FaqI	GGGAC	2 cut(s)	335, 1277
FauI	CCCGC	3 cut(s)	1483, 1508, 2189
FauNDI	CATATG	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	1371
FblI	GTMKAC	3 cut(s)	1200, 1471, 2052
FokI	GGATG	6 cut(s)	797, 970, 1001, 1235, 1409, 1826
FriOI	GRGCYC	1 cut(s)	211
FspBI	CTAG	5 cut(s)	632, 839, 1134, 1326, 2247
GlaI	GCGC	1 cut(s)	2195
GsuI	CTGGAG	2 cut(s)	383, 1454
HaeIII	GGCC	3 cut(s)	111, 1943, 2059
HapII	CCGG	5 cut(s)	820, 955, 1703, 2056, 2138
HgaI	GACGC	2 cut(s)	1082, 1958
HhaI	GCGC	1 cut(s)	2196
Hin6I	GCGC	1 cut(s)	2194
HinP1I	GCGC	1 cut(s)	2194
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HinfI	GANTC	3 cut(s)	1180, 1414, 2043
HpaII	CCGG	5 cut(s)	820, 955, 1703, 2056, 2138
HphI	GGTGA	5 cut(s)	365, 461, 1101, 1787, 1886
Hpy166II	GTNNAC	7 cut(s)	15, 879, 1201, 1472, 1750, 2004, 2053
Hpy188I	TCNGA	8 cut(s)	37, 400, 619, 655, 774, 1532, 1695, 1939
Hpy8I	GTNNAC	7 cut(s)	15, 879, 1201, 1472, 1750, 2004, 2053
HpyAV	CCTTC	7 cut(s)	525, 699, 1139, 1878, 2008, 2043, 2146
HpyCH4III	ACNGT	6 cut(s)	359, 1158, 1230, 2050, 2108, 2187
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	9 cut(s)	6, 146, 239, 392, 646, 899, 1660, 1853, 2215
HpyF10VI	GCNNNNNNNGC	8 cut(s)	389, 1121, 1124, 1130, 1928, 1940, 1949, 2202
HpySE526I	ACGT	1 cut(s)	72
HspAI	GCGC	1 cut(s)	2194
Ksp22I	TGATCA	1 cut(s)	1371
LmnI	GCTCC	2 cut(s)	1465, 1603
LweI	GCATC	7 cut(s)	401, 637, 908, 916, 948, 1077, 2083
MaeI	CTAG	5 cut(s)	632, 839, 1134, 1326, 2247
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	73, 353, 406
MbiI	CCGCTC	1 cut(s)	1478
MfeI	CAATTG	2 cut(s)	698, 1730
MflI	RGATCY	3 cut(s)	301, 978, 2017
MhlI	GDGCHC	4 cut(s)	211, 591, 808, 1152
MmeI	TCCRAC	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	1959
MslI	CAYNNNNRTG	2 cut(s)	1305, 2009
MspA1I	CMGCKG	2 cut(s)	1124, 1799
MspCI	CTTAAG	1 cut(s)	1736
MspI	CCGG	5 cut(s)	820, 955, 1703, 2056, 2138
MspR9I	CCNGG	3 cut(s)	596, 955, 1703
MunI	CAATTG	2 cut(s)	698, 1730
Mva1269I	GAATGC	2 cut(s)	445, 569
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	2 cut(s)	1093, 2196
MwoI	GCNNNNNNNGC	8 cut(s)	389, 1121, 1124, 1130, 1928, 1940, 1949, 2202
NciI	CCSGG	2 cut(s)	955, 1703
NcoI	CCATGG	2 cut(s)	930, 1944
NdeI	CATATG	1 cut(s)	8
NheI	GCTAGC	1 cut(s)	1133
NlaIV	GGNNCC	7 cut(s)	303, 687, 980, 1043, 1151, 1915, 2019
NmuCI	GTSAC	2 cut(s)	73, 353
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	5 cut(s)	253, 392, 646, 2131, 2215
NspV	TTCGAA	1 cut(s)	1143
PaeI	GCATGC	1 cut(s)	2215
PaeR7I	CTCGAG	1 cut(s)	1163
PagI	TCATGA	2 cut(s)	573, 763
PaqCI	CACCTGC	1 cut(s)	1120
PciI	ACATGT	1 cut(s)	2127
PcsI	WCGNNNNNNNCGW	1 cut(s)	2186
PctI	GAATGC	2 cut(s)	445, 569
PdmI	GAANNNNTTC	1 cut(s)	1959
PfeI	GAWTC	3 cut(s)	1180, 1414, 2043
Pfl23II	CGTACG	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	953
PinAI	ACCGGT	1 cut(s)	819
PpuMI	RGGWCCY	1 cut(s)	1670
PscI	ACATGT	1 cut(s)	2127
PsiI	TTATAA	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	1670
Psp6I	CCWGG	1 cut(s)	594
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	594
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	7 cut(s)	303, 687, 980, 1043, 1151, 1915, 2019
PspPI	GGNCC	1 cut(s)	1670
PspPPI	RGGWCCY	1 cut(s)	1670
PstI	CTGCAG	1 cut(s)	1855
PstNI	CAGNNNCTG	1 cut(s)	1127
PsuI	RGATCY	3 cut(s)	301, 978, 2017
PvuII	CAGCTG	2 cut(s)	1124, 1799
RsaI	GTAC	4 cut(s)	71, 636, 1751, 2003
RsaNI	GTAC	4 cut(s)	70, 635, 1750, 2002
RseI	CAYNNNNRTG	2 cut(s)	1305, 2009
Sau96I	GGNCC	1 cut(s)	1670
ScrFI	CCNGG	3 cut(s)	596, 955, 1703
SduI	GDGCHC	4 cut(s)	211, 591, 808, 1152
SfaNI	GCATC	7 cut(s)	401, 637, 908, 916, 948, 1077, 2083
SfcI	CTRYAG	3 cut(s)	1119, 1581, 1851
Sfr274I	CTCGAG	1 cut(s)	1163
SfuI	TTCGAA	1 cut(s)	1143
SinI	GGWCC	1 cut(s)	1670
SlaI	CTCGAG	1 cut(s)	1163
SmiMI	CAYNNNNRTG	2 cut(s)	1305, 2009
SmlI	CTYRAG	6 cut(s)	167, 722, 1163, 1479, 1515, 1736
SmoI	CTYRAG	6 cut(s)	167, 722, 1163, 1479, 1515, 1736
SphI	GCATGC	1 cut(s)	2215
SsiI	CCGC	8 cut(s)	1091, 1252, 1455, 1476, 1501, 1720, 2123, 2196
SspI	AATATT	2 cut(s)	1261, 1525
SspMI	CTAG	5 cut(s)	632, 839, 1134, 1326, 2247
StyD4I	CCNGG	3 cut(s)	594, 953, 1701
StyI	CCWWGG	3 cut(s)	930, 1923, 1944
TaaI	ACNGT	6 cut(s)	359, 1158, 1230, 2050, 2108, 2187
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	222, 280, 1143, 1164, 1819, 2189
TatI	WGTACW	3 cut(s)	634, 1749, 2001
TauI	GCSGC	1 cut(s)	1093
TfiI	GAWTC	3 cut(s)	1180, 1414, 2043
TscAI	CASTG	4 cut(s)	32, 271, 1219, 1849
TseFI	GTSAC	2 cut(s)	73, 353
Tsp45I	GTSAC	2 cut(s)	73, 353
TspGWI	ACGGA	2 cut(s)	797, 1796
TspRI	CASTG	4 cut(s)	32, 271, 1219, 1849
Vha464I	CTTAAG	1 cut(s)	1736
VpaK11BI	GGWCC	1 cut(s)	1670
XapI	RAATTY	7 cut(s)	40, 307, 893, 992, 1208, 1354, 1982
XceI	RCATGY	5 cut(s)	253, 392, 646, 2131, 2215
XhoI	CTCGAG	1 cut(s)	1163
XmiI	GTMKAC	3 cut(s)	1200, 1471, 2052
XmnI	GAANNNNTTC	1 cut(s)	1959
XspI	CTAG	5 cut(s)	632, 839, 1134, 1326, 2247
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.