Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

40327926 .. 40328870

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGATCCCAAAACCCCAAATGTCCAAGGAGGAGTTGGAGGACATAATCCTGCAGAAAATCTTTCTTGTATCACTCACCGAGCCCTCCGAACCCGATTCTCGAATCGTCTACTTGGAGATGACGGCTGCAGAGATTCTCAGCGTAGGCAAGGAGATGAGGCTCAGTATAGACCTCATGGAGTCGATCCTAATCGATCGGCTCATGGGTAATTTCGGCTCTGTCGAACCACCTTTTCAGTACCTAGTTGGCTGCTACAAACGTGCCCATGATGAGTGTAAGAAGATTACTTCTGTGAAACATAAGGATTTGAGGTTTTATATGGAATCTATTATTAGGCAAGCCAAGAAGCTGTCGGTTTCGTATGGTAGGATTCACTTGGGGAACCCGGAAGCGTTTCCTAGTCCAGGTGGGAATTCAAAAAACTCAATAAGTGCGTCCCCTTTGTTGCCGTTGATTTTCTCAGAGGTTGCAAATTCAGTGGATGGATTTGGAGGAAGCAGTAGTAGCCCACCTGGGTTTTTGGATGAGTTCTTTCGTGACTCGGATTTTGATATGTTGGACCCCATTTTGAAGGGTTTGTATGAAGAACTTACGGAGACTGTGCAAAATGTTTCGGCACTTGGAAACTTTCAGCAGCCGTTGAGGGCTCTGTTGTTTTTGGTTAGTTTCCCAGCTGGTGCCAAGTCTCTTGTGAATCACCCAAGGTGGATTCCCAAAGGAGTCTTGAATGGCCGTGGTATTGAAAAGACAAGTATTTTAGGTCCTTTCTTTCATGTCAGTGCCCTGTCTGACCATCCTTTTTCTGTTAGTGAGTTCTTTTCAGAAGGTTCTAACACAGCTGATAAATCTTCGTACGTGACGATTAAGACAGTGATGAACAATTTATATGATGGCCTCGCACAAGTTCTCCTCACGCTACTGAAAAATCCAGACACCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

314

Amino Acids

34.77

Weight (kDa)

5.6

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	940
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	415, 475
AfaI	GTAC	2 cut(s)	242, 857
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	4 cut(s)	420, 574, 730, 746
AjnI	CCWGG	2 cut(s)	406, 514
AluBI	AGCT	3 cut(s)	352, 677, 842
AluI	AGCT	3 cut(s)	352, 677, 842
Alw26I	GTCTC	2 cut(s)	593, 693
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	733, 895
ApeKI	GCWGC	3 cut(s)	128, 252, 637
ApoI	RAATTY	2 cut(s)	415, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	562, 764
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	70, 692
AvaII	GGWCC	2 cut(s)	562, 764
BaeGI	GKGCMC	2 cut(s)	268, 787
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	2 cut(s)	87, 652
BbvI	GCAGC	3 cut(s)	115, 239, 649
BccI	CCATC	3 cut(s)	479, 804, 887
BceAI	ACGGC	4 cut(s)	141, 436, 625, 720
BciT130I	CCWGG	2 cut(s)	408, 516
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	593, 693
BfaI	CTAG	3 cut(s)	245, 402, 943
BfmI	CTRYAG	2 cut(s)	53, 129
BisI	GCNGC	3 cut(s)	129, 253, 638
BlsI	GCNGC	3 cut(s)	130, 254, 639
Bme1390I	CCNGG	3 cut(s)	389, 408, 516
Bme18I	GGWCC	2 cut(s)	562, 764
BmgT120I	GGNCC	2 cut(s)	562, 764
BmiI	GGNNCC	3 cut(s)	386, 564, 682
BmrFI	CCNGG	3 cut(s)	389, 408, 516
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	27, 515, 704, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	408, 516
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	4 cut(s)	27, 515, 704, 736
BseGI	GGATG	3 cut(s)	490, 532, 796
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	3 cut(s)	154, 178, 477
BseRI	GAGGAG	2 cut(s)	47, 902
BseSI	GKGCMC	2 cut(s)	268, 787
BseXI	GCAGC	3 cut(s)	115, 239, 649
BseYI	CCCAGC	1 cut(s)	673
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	735, 897
BshNI	GGYRCC	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	389
BsiWI	CGTACG	1 cut(s)	855
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	2 cut(s)	593, 693
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	735, 897
Bsp1286I	GDGCHC	4 cut(s)	87, 268, 652, 787
Bsp143I	GATC	3 cut(s)	6, 186, 196
BspACI	CCGC	1 cut(s)	940
BspANI	GGCC	2 cut(s)	735, 897
BspCNI	CTCAG	3 cut(s)	153, 177, 476
BspDI	ATCGAT	1 cut(s)	195
BspLI	GGNNCC	3 cut(s)	386, 564, 682
BspMAI	CTGCAG	2 cut(s)	57, 133
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	680
BssECI	CCNNGG	4 cut(s)	27, 515, 704, 736
BssMI	GATC	3 cut(s)	6, 186, 196
BssT1I	CCWWGG	2 cut(s)	27, 704
Bst2UI	CCWGG	2 cut(s)	408, 516
Bst4CI	ACNGT	2 cut(s)	604, 874
BstBAI	YACGTR	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	140, 164, 463
BstDSI	CCRYGG	1 cut(s)	736
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	490, 532, 796
BstKTI	GATC	3 cut(s)	9, 189, 199
BstMAI	GTCTC	2 cut(s)	593, 693
BstMBI	GATC	3 cut(s)	6, 186, 196
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	2 cut(s)	408, 516
BstSCI	CCNGG	3 cut(s)	387, 406, 514
BstSFI	CTRYAG	2 cut(s)	53, 129
BstSLI	GKGCMC	2 cut(s)	268, 787
BstV1I	GCAGC	3 cut(s)	115, 239, 649
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	735, 897
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	3 cut(s)	490, 532, 796
BtsIMutI	CAGTG	3 cut(s)	486, 787, 879
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	562, 764
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	241, 856
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	4 cut(s)	178, 205, 269, 776
CviQI	GTAC	2 cut(s)	241, 856
DdeI	CTNAG	3 cut(s)	140, 164, 463
DpnI	GATC	3 cut(s)	8, 188, 198
DpnII	GATC	3 cut(s)	6, 186, 196
EaeI	YGGCCR	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	27, 704
Eco24I	GRGCYC	2 cut(s)	87, 652
Eco47I	GGWCC	2 cut(s)	562, 764
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	406, 514
EcoT14I	CCWWGG	2 cut(s)	27, 704
EcoT38I	GRGCYC	2 cut(s)	87, 652
ErhI	CCWWGG	2 cut(s)	27, 704
FaeI	CATG	4 cut(s)	181, 208, 272, 779
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	4 cut(s)	177, 204, 268, 775
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	129, 253, 638
FokI	GGATG	3 cut(s)	497, 539, 783
FriOI	GRGCYC	2 cut(s)	87, 652
Fsp4HI	GCNGC	3 cut(s)	129, 253, 638
FspBI	CTAG	3 cut(s)	245, 402, 943
GluI	GCNGC	3 cut(s)	129, 253, 638
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	735, 897
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	181, 208, 272, 779
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	70, 692
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	91, 466, 547, 793, 826
Hpy188III	TCNNGA	4 cut(s)	102, 539, 727, 932
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	568, 821
HpyCH4III	ACNGT	2 cut(s)	604, 874
HpyCH4IV	ACGT	2 cut(s)	262, 858
HpyCH4V	TGCA	4 cut(s)	55, 131, 473, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	3 cut(s)	140, 164, 463
HpySE526I	ACGT	2 cut(s)	262, 858
Hsp92II	CATG	4 cut(s)	181, 208, 272, 779
Kzo9I	GATC	3 cut(s)	6, 186, 196
LpnPI	CCDG	9 cut(s)	65, 393, 402, 420, 501, 528, 663, 687, 800
Lsp1109I	GCAGC	3 cut(s)	115, 239, 649
MaeI	CTAG	3 cut(s)	245, 402, 943
MaeII	ACGT	2 cut(s)	262, 858
MaeIII	GTNAC	2 cut(s)	539, 859
MalI	GATC	3 cut(s)	8, 188, 198
MboI	GATC	3 cut(s)	6, 186, 196
MboII	GAAGA	3 cut(s)	295, 599, 843
MhlI	GDGCHC	4 cut(s)	87, 268, 652, 787
MluCI	AATT	4 cut(s)	211, 415, 475, 883
MlyI	GAGTC	3 cut(s)	191, 536, 732
MmeI	TCCRAC	2 cut(s)	18, 540
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	867
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	2 cut(s)	677, 842
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	3 cut(s)	389, 408, 516
MvaI	CCWGG	2 cut(s)	408, 516
MwoI	GCNNNNNNNGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	6, 186, 196
NlaIII	CATG	4 cut(s)	181, 208, 272, 779
NlaIV	GGNNCC	3 cut(s)	386, 564, 682
NmuCI	GTSAC	2 cut(s)	539, 859
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 860
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	7 cut(s)	98, 105, 136, 326, 373, 697, 712
Pfl23II	CGTACG	1 cut(s)	855
PkrI	GCNGC	3 cut(s)	130, 254, 639
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	3 cut(s)	190, 536, 731
PpsI	GAGTC	3 cut(s)	190, 536, 731
Ppu21I	YACGTR	1 cut(s)	859
PpuMI	RGGWCCY	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	406, 514
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	406, 514
PspLI	CGTACG	1 cut(s)	855
PspN4I	GGNNCC	3 cut(s)	386, 564, 682
PspPI	GGNCC	2 cut(s)	562, 764
PspPPI	RGGWCCY	1 cut(s)	764
PstI	CTGCAG	2 cut(s)	57, 133
PvuI	CGATCG	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	677, 842
RsaI	GTAC	2 cut(s)	242, 857
RsaNI	GTAC	2 cut(s)	241, 856
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	1 cut(s)	867
SatI	GCNGC	3 cut(s)	129, 253, 638
Sau3AI	GATC	3 cut(s)	6, 186, 196
Sau96I	GGNCC	2 cut(s)	562, 764
SchI	GAGTC	3 cut(s)	191, 536, 732
ScrFI	CCNGG	3 cut(s)	389, 408, 516
SduI	GDGCHC	4 cut(s)	87, 268, 652, 787
SfcI	CTRYAG	2 cut(s)	53, 129
SinI	GGWCC	2 cut(s)	562, 764
SmiMI	CAYNNNNRTG	1 cut(s)	780
Sse9I	AATT	4 cut(s)	211, 415, 475, 883
SsiI	CCGC	1 cut(s)	940
SspMI	CTAG	3 cut(s)	245, 402, 943
StyD4I	CCNGG	3 cut(s)	387, 406, 514
StyI	CCWWGG	2 cut(s)	27, 704
TaaI	ACNGT	2 cut(s)	604, 874
TaiI	ACGT	2 cut(s)	265, 861
TaqI	TCGA	4 cut(s)	103, 185, 195, 225
TasI	AATT	4 cut(s)	211, 415, 475, 883
TfiI	GAWTC	7 cut(s)	98, 105, 136, 326, 373, 697, 712
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	3 cut(s)	486, 787, 879
TseFI	GTSAC	2 cut(s)	539, 859
TseI	GCWGC	3 cut(s)	128, 252, 637
Tsp45I	GTSAC	2 cut(s)	539, 859
TspDTI	ATGAA	3 cut(s)	600, 764, 893
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	3 cut(s)	486, 787, 879
VpaK11BI	GGWCC	2 cut(s)	562, 764
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	415, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	3 cut(s)	245, 402, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.