Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

18785962 .. 18787281

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCCTCTGCCCTCAACTTGCCCCATAGAATTTGCATCTATGCCAGAGCATTTTGTGGAAGATGCCATGGAGTTGCTTATAGTTGCTTCCCAGCTGATTCCAAAGGCATTTAGTGGGGTCTTGTTGGATGATTTTATGAATTTTATTGTTATGTTCATGGCAAGTCCGGAATATATCAGGAACCCTTATTTAAGATCAAAGATGGTTCAAGTCCTCAACTGCTTGATGCATGGAAGTCGATCATCTGCTGCTCTTGCTATGCTGTTCGAAGGGCACAAACTGTCTCTTGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTGGACATTGAGTACACTGGCTCTCACACTCGGTTCTATGACAAGTTTAGCATCCGCCATAGCATTGCCGAGCTTCTCAAGTATCTGTGGCAAGTACCTAGTCATCGAAATGTTTGGAGACAGGTTGCTAAGGAAGAGGAAAAGGGCATCTATTTGAATTTCTTAAACTTCTTGATGAATGACAGCATATATCTTCTGGATGAAGGTTTTAAAACAATTATTGAACACAAACAACTGGAAGCCGAGATGAACACTGCAGCATGGTCGCATGTACCTGAACATGAGAGGAAAGAGAAAACTCGCCTCTTCCACTCTCAGGAAAACATTATCCGAACTAATATGATCTTCGCAAATGAAGATCTGAGTATATTGGCATTTACTTCAGAACAGATTACAGCTCCTTTCCTACTCCAGGAGATGGTTGAAAGGGTGGCAAGCATGCTGAATTATTTTCTCTTGCAATTAGTAGGTCCTAAAAGAAACTCTCTAAAGTTGACAGACCCCAAGAAATACGAGTCCAACCCGAAGCAATTGATCAAGCAGATTGTCAAGGTAAATGTTCATCTGGCAAGAGGTGATAGAGACAATATTTTTGCAGCTGCCATCTCAAATGATGGAAGGTCTTACAATGACCAATTGTTTAGTTCTGCTGTACATGTCTTGAGGAGAATTGGTGAAGATGGGAGGGTCATTCAAGAGTTTTTTGAGCTTGGTTCCAAAGCCAAGGATGCTGCTTCGGAGGCCATGGACGTTGAAGCTGCTCTTGGAGATATACCAGATGAGTTCCTGGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCCTACCTTCTTCAAGAATCACAATAGACTGGCCTGTGATTCAGAGGCATCTTCTTAGTAATAGTACCGATCCATTCAATCGTTCCCATCTAACTGCGGACATGTTGATACCAGACATTGAATTGAAGGCAAAAATACAAGAGTTCATTAGGTCCCAAGAGTTCATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

440

Amino Acids

50.63

Weight (kDa)

5.67

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	1 - 348	1.7e-114	Ubiquitin elongating factor core
U-box	PF04564	365 - 435	4.8e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	739
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	376, 1244
AclWI	GGATC	3 cut(s)	1133, 1146, 1211
AcsI	RAATTY	3 cut(s)	29, 139, 478
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	6 cut(s)	335, 417, 594, 975, 1124, 1213
AfiI	CCNNNNNNNGG	3 cut(s)	637, 733, 739
AflIII	ACRYGT	2 cut(s)	976, 1248
AjnI	CCWGG	2 cut(s)	732, 1107
AjuI	GAANNNNNNNTTGG	2 cut(s)	1068, 1100
AluBI	AGCT	6 cut(s)	94, 394, 719, 920, 1030, 1079
AluI	AGCT	6 cut(s)	94, 394, 719, 920, 1030, 1079
Alw26I	GTCTC	3 cut(s)	288, 433, 897
AlwI	GGATC	3 cut(s)	1133, 1146, 1211
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	2 cut(s)	1062, 1178
ApeKI	GCWGC	6 cut(s)	248, 578, 917, 920, 1052, 1079
ApoI	RAATTY	3 cut(s)	29, 139, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspS9I	GGNCC	3 cut(s)	791, 1111, 1299
AsuHPI	GGTGA	2 cut(s)	908, 1007
AsuII	TTCGAA	1 cut(s)	267
AvaII	GGWCC	3 cut(s)	791, 1111, 1299
BaeGI	GKGCMC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	1138
BbvI	GCAGC	6 cut(s)	235, 590, 907, 929, 1039, 1066
BccI	CCATC	6 cut(s)	196, 733, 929, 932, 995, 1242
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 567, 601
BciT130I	CCWGG	2 cut(s)	734, 1109
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	3 cut(s)	288, 433, 897
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	576
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	6 cut(s)	249, 579, 918, 921, 1053, 1080
BlsI	GCNGC	6 cut(s)	250, 580, 919, 922, 1054, 1081
Bme1390I	CCNGG	2 cut(s)	734, 1109
Bme18I	GGWCC	3 cut(s)	791, 1111, 1299
BmgT120I	GGNCC	3 cut(s)	791, 1111, 1299
BmiI	GGNNCC	5 cut(s)	182, 1036, 1113, 1140, 1301
BmrFI	CCNGG	2 cut(s)	734, 1109
BmsI	GCATC	7 cut(s)	44, 52, 216, 381, 477, 1039, 1204
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	3 cut(s)	308, 383, 1003
BsaJI	CCNNGG	3 cut(s)	66, 1044, 1065
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	637, 733, 739
Bse1I	ACTGG	4 cut(s)	343, 561, 1142, 1181
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	734, 1109
BseDI	CCNNGG	3 cut(s)	66, 1044, 1065
BseGI	GGATG	4 cut(s)	133, 372, 526, 1054
BseLI	CCNNNNNNNGG	3 cut(s)	637, 733, 739
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	650, 674
BseNI	ACTGG	4 cut(s)	343, 561, 1142, 1181
BseRI	GAGGAG	1 cut(s)	1000
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	6 cut(s)	235, 590, 907, 929, 1039, 1066
BseYI	CCCAGC	1 cut(s)	90
BshFI	GGCC	2 cut(s)	1064, 1180
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	1285
BslI	CCNNNNNNNGG	3 cut(s)	637, 733, 739
BsmAI	GTCTC	3 cut(s)	288, 433, 897
BsmFI	GGGAC	1 cut(s)	1285
BsnI	GGCC	2 cut(s)	1064, 1180
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp13I	TCCGGA	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
Bsp19I	CCATGG	2 cut(s)	66, 1065
BspACI	CCGC	2 cut(s)	376, 1244
BspANI	GGCC	2 cut(s)	1064, 1180
BspCNI	CTCAG	2 cut(s)	649, 675
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	182, 1036, 1113, 1140, 1301
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	3 cut(s)	1133, 1146, 1211
BspT104I	TTCGAA	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	4 cut(s)	343, 561, 1142, 1181
BssECI	CCNNGG	3 cut(s)	66, 1044, 1065
BssMI	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
BssT1I	CCWWGG	3 cut(s)	66, 1044, 1065
Bst2UI	CCWGG	2 cut(s)	734, 1109
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	450, 632
BstAUI	TGTACA	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	757, 761
BstDEI	CTNAG	4 cut(s)	450, 636, 683, 1202
BstDSI	CCRYGG	2 cut(s)	66, 1065
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	4 cut(s)	133, 372, 526, 1054
BstKTI	GATC	7 cut(s)	197, 242, 666, 682, 858, 1141, 1219
BstMAI	GTCTC	3 cut(s)	288, 433, 897
BstMBI	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 1049, 1061
BstNI	CCWGG	2 cut(s)	734, 1109
BstNSI	RCATGY	4 cut(s)	593, 763, 980, 1252
BstSCI	CCNGG	2 cut(s)	732, 1107
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	235, 590, 907, 929, 1039, 1066
BstX2I	RGATCY	2 cut(s)	679, 1138
BstYI	RGATCY	2 cut(s)	679, 1138
BsuRI	GGCC	2 cut(s)	1064, 1180
BtgI	CCRYGG	2 cut(s)	66, 1065
BtsCI	GGATG	4 cut(s)	133, 372, 526, 1054
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	336, 573
Cac8I	GCNNGC	2 cut(s)	757, 761
Cfr13I	GGNCC	3 cut(s)	791, 1111, 1299
Csp6I	GTAC	6 cut(s)	334, 416, 593, 974, 1123, 1212
CviQI	GTAC	6 cut(s)	334, 416, 593, 974, 1123, 1212
DdeI	CTNAG	4 cut(s)	450, 636, 683, 1202
DpnI	GATC	7 cut(s)	196, 241, 665, 681, 857, 1140, 1218
DpnII	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
DraI	TTTAAA	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	450, 632
EarI	CTCTTC	2 cut(s)	450, 632
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	3 cut(s)	66, 1044, 1065
Eco47I	GGWCC	3 cut(s)	791, 1111, 1299
Eco57I	CTGAAG	1 cut(s)	687
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoO109I	RGGNCCY	2 cut(s)	791, 1299
EcoRII	CCWGG	2 cut(s)	732, 1107
EcoT14I	CCWWGG	3 cut(s)	66, 1044, 1065
EcoT22I	ATGCAT	1 cut(s)	231
ErhI	CCWWGG	3 cut(s)	66, 1044, 1065
FalI	AAGNNNNNCTT	2 cut(s)	1068, 1100
FaqI	GGGAC	1 cut(s)	1285
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	6 cut(s)	249, 579, 918, 921, 1053, 1080
FokI	GGATG	4 cut(s)	140, 359, 533, 1061
Fsp4HI	GCNGC	6 cut(s)	249, 579, 918, 921, 1053, 1080
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	6 cut(s)	249, 579, 918, 921, 1053, 1080
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	1064, 1180
HapII	CCGG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HinfI	GANTC	5 cut(s)	97, 304, 836, 1164, 1186
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	2 cut(s)	908, 1007
Hpy166II	GTNNAC	4 cut(s)	325, 336, 816, 1125
Hpy188I	TCNGA	5 cut(s)	653, 684, 706, 1060, 1191
Hpy8I	GTNNAC	4 cut(s)	325, 336, 816, 1125
HpyAV	CCTTC	6 cut(s)	263, 518, 933, 1129, 1164, 1267
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	1071
HpyCH4V	TGCA	5 cut(s)	35, 229, 578, 781, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 1049, 1061
HpyF3I	CTNAG	4 cut(s)	450, 636, 683, 1202
HpySE526I	ACGT	1 cut(s)	1071
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	6 cut(s)	235, 590, 907, 929, 1039, 1066
LweI	GCATC	7 cut(s)	44, 52, 216, 381, 477, 1039, 1204
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	1071
MalI	GATC	7 cut(s)	196, 241, 665, 681, 857, 1140, 1218
MboI	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
MboII	GAAGA	9 cut(s)	71, 467, 506, 619, 658, 689, 1010, 1149, 1190
MfeI	CAATTG	2 cut(s)	851, 956
MflI	RGATCY	2 cut(s)	679, 1138
MhlI	GDGCHC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	2 cut(s)	105, 864
Mph1103I	ATGCAT	1 cut(s)	231
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	4 cut(s)	191, 485, 531, 1130
MslI	CAYNNNNRTG	2 cut(s)	429, 1130
MspA1I	CMGCKG	2 cut(s)	94, 920
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	734, 1109
MunI	CAATTG	2 cut(s)	851, 956
MvaI	CCWGG	2 cut(s)	734, 1109
MwoI	GCNNNNNNNGC	3 cut(s)	254, 1049, 1061
NcoI	CCATGG	2 cut(s)	66, 1065
NdeII	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
NlaIV	GGNNCC	5 cut(s)	182, 1036, 1113, 1140, 1301
NmeAIII	GCCGAG	2 cut(s)	415, 589
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	4 cut(s)	593, 763, 980, 1252
NspV	TTCGAA	1 cut(s)	267
PaeI	GCATGC	1 cut(s)	763
PciI	ACATGT	2 cut(s)	976, 1248
PfeI	GAWTC	4 cut(s)	97, 304, 1164, 1186
PflMI	CCANNNNNTGG	1 cut(s)	739
PfoI	TCCNGGA	2 cut(s)	732, 1107
PkrI	GCNGC	6 cut(s)	250, 580, 919, 922, 1054, 1081
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PpuMI	RGGWCCY	2 cut(s)	791, 1299
PscI	ACATGT	2 cut(s)	976, 1248
Psp5II	RGGWCCY	2 cut(s)	791, 1299
Psp6I	CCWGG	2 cut(s)	732, 1107
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	732, 1107
PspN4I	GGNNCC	5 cut(s)	182, 1036, 1113, 1140, 1301
PspPI	GGNCC	3 cut(s)	791, 1111, 1299
PspPPI	RGGWCCY	2 cut(s)	791, 1299
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	679, 1138
PvuII	CAGCTG	2 cut(s)	94, 920
RsaI	GTAC	6 cut(s)	335, 417, 594, 975, 1124, 1213
RsaNI	GTAC	6 cut(s)	334, 416, 593, 974, 1123, 1212
RseI	CAYNNNNRTG	2 cut(s)	429, 1130
SaqAI	TTAA	4 cut(s)	191, 485, 531, 1130
SatI	GCNGC	6 cut(s)	249, 579, 918, 921, 1053, 1080
Sau3AI	GATC	7 cut(s)	194, 239, 663, 679, 855, 1138, 1216
Sau96I	GGNCC	3 cut(s)	791, 1111, 1299
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	734, 1109
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	7 cut(s)	44, 52, 216, 381, 477, 1039, 1204
SfcI	CTRYAG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	3 cut(s)	791, 1111, 1299
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1130
SmlI	CTYRAG	3 cut(s)	287, 398, 982
SmoI	CTYRAG	3 cut(s)	287, 398, 982
SphI	GCATGC	1 cut(s)	763
SsiI	CCGC	2 cut(s)	376, 1244
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	732, 1107
StyI	CCWWGG	3 cut(s)	66, 1044, 1065
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	3 cut(s)	238, 267, 427
TatI	WGTACW	3 cut(s)	333, 973, 1122
TfiI	GAWTC	4 cut(s)	97, 304, 1164, 1186
Tru1I	TTAA	4 cut(s)	191, 485, 531, 1130
Tru9I	TTAA	4 cut(s)	191, 485, 531, 1130
TscAI	CASTG	2 cut(s)	343, 580
TseI	GCWGC	6 cut(s)	248, 578, 917, 920, 1052, 1079
TspRI	CASTG	2 cut(s)	343, 580
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	3 cut(s)	791, 1111, 1299
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	3 cut(s)	29, 139, 478
XceI	RCATGY	4 cut(s)	593, 763, 980, 1252
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.