Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

44990352 .. 44993354

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3003 bp

ATGGCGATCCCAAAACCCCAAATGTCCAAGGAGGAGTTGGAGGACATAATCCTGCAGAAAATCTTTCTTGTATCACTCACCGAGCCCTCCGAACCCGATTCTCGAATCGTCTACTTGGAGATGACGGCTGCAGAGATTCTCAGCGTAGGCAAGGAGATGAGGCTCAGTATAGACCTCATGGAGTCGATCCTAATCGATCGGCTCATGGGTAATTTCGTCTCTGTCGAACCACCTTTTCAGTACCTAGTTGGCTGCTACAAACGTGCCGATGATGAGTGTAAGAAGATTACTTCTGTGAAAAATAACGATTTGAGGTCTTATATGGAATCTATTATTAGGCAAGCCAAGAAGCTGTCGGTGTCGTACGGTAGGATTCACTTGGGGAACCCGGAAGCGTTTCCTAGTCCAGGTGGGAATTCAAATAACTCAATAACTGCGTCCCCTTTGTTGCCGTTGATTTTCTCAGAGGTTGCAAGTTCAGTGGATGGATTTGGAGGAAGCAGTAGTAGTCCACCTGGGTTTATGGATGAGTTCTTTCGTGACTCGGATTTTGATATGTTGGACCCCATTTTGAAGGGTTTATATGAAGAACTTATGGAGACTGTGCAAAATGTTTCGGCACTTGGAAACTTTCAGCAGCCATTGAGGGCTCTGTTGTTTTTGGTTAGTTTCCCAGCTGGTGCCAAGTCTCTTGTGAATCACCCAAGGTGGATTCCCAAAGGAGTCTTGAATGGCCGTGGTATTGAAAAGACAAGTATTTTAGGTCCTTTCTTTCATGTCAGTGCCCTGTCTGACCATCCTTTTTCTGTTAGTGAGTTCTTTTCAGAAGGTTCTAACACAGCTGATAAATCTTCGTACGTGACGATTAAGACAGTGATGAACAATTTATATGATGGCCTCGCACAAGTTCTCCTCACGCTACTGAAAAATCCAGACACCAGCGAGAAAGTTCTCGAGTATCTTGCTGTGGTTATCAACAAGAACTCATCAAGAGCTCATATGCAAGTGGATCCTCTTTCCTGCGCAAGTTCGGGGATGTTCGTCAATCTCAGTGCGGTCATGCTTCGGCTTTGCGGGCCGCTTTTAGATGCAAACTTAACCAAAAGAGACAAAATTTATCCGAAATATGTGTTCTCAGGTAACCGTCTGGAGTCGAGAGGTTTGACAGCTCTACATGCTACATCTGAGGAAGTTACTGAATGGATTAGTAAAGATAACATGAGCGCTCAATATTCTTTTAATTGCGAGTGCTTCTTCATGACTGCGAGGGTGCTCAATCTGGGTTTATTGAAAGCATTTTCTGACCATAAACATTTAGAAGAGAACATTCGCAGGTTTAAAGAAGCACTTAATGCCATCAAAGACCTGGGTTCTCCACAGTTGAACACTAACATAGCTCAGCTCGAGAAAGAAATAAAGTTGTTAGAACAGGGAAGGCATTGCTACGAAGCTCAGATAGTAAGCGATGAACCACTTGTACAGCAGGCGATTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGGTGGCTTGGTTGGTGGATTTAAAATGCCTCTGCCATCAACGTGCCCCGTAGAATTTGCATCTATGCCAGAGCATTTTGTGGAAGATGCCATGGAGTTTATTTTATTTGCTTCCCGGATTCCAAAAGCATTTAGTGGGATCTTGTTGGATGATTTTATGAACTTCATAATAACGTTCATGGCAAGTCCGGAATATATCAGGAACCCTTATCTAAGATCAAAGATGGTTGAAGTCCTCAACTGCTTGATGCCGGGTGGAAATCGACCATCTGCTGCTCCTCCTACTCTGTTCAAAGAGCACAAACTGTCTCTTGAGTATCTTGTAAGGAATCTCTTGAAACTATATGTGGATGTTGAGTTGACTGGTTCTCACACACAGTTGTATGACAAGTTTAACATCCGGCACAAAATTGCTAAGCTTCTCGAGTATCTGTGGCAAGTACCTAGTCATCGAAATGCTTGGAAAAAGGTTGCTAAGGAAGAGGAGAAGGGCGTATATTTGAATTACTTAAACTTCTTGATCAATGACAGTATATATCTTCTGGATAACAGTTTTAAAACGATTCTTGAACACAAACAACTGGAAGCCGAGATGTCAAACAATGCAGACTGGAAGCGTCGACCTGCTCGAGAGAGGAAGGAGAAAGCTCACCTCTTCCACTCTCAGGAAAAGATTATCCAAACTCATTTGACGTTGGCAAATGAAGATCTGAATACGCTGGCATTTACTTCAGAACAGATTACAGCTCCTTTCCTACTCCCAGAGATGGTTGAAAGGGTGGCAAGCGTGCTGAATTATTTTTTGTTGCAATTGGTAGGTCCTAAAAGAAAATCTCTTAATTTGAAAGACCCCGAGAAATGTAAGTTTCACCCAGAGCAATTGATCAAGCAGATTGTCTACATATATGTTCATCTGGCAAGAGGCGATACAGACAATACTTTTGCAGCTGCCATCTCGAAAGATGGTAGGTCTTCCAATGACCAATTGTTTAGTGCTGCCGCGGATGTCTTGAGGAAAATTGGTGAAGATGGGAGGGCCATACAAGAGTTTGTTGAGCTTGGTTCCAAAGCTGAGGTTGCTGCTTCGGAGGCCTCGGACGCTGAAGCTGCACTTGGAGATATACCAGATGAGTTCCTAGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCCTACCTTCTTCAAGAATCACAATAGACCGGCCAGTCATTCAGAGGCATCTTCTTAGTGATAATACTGATCCATTCAATCGTTCCCATCTTACTGCGGACATGTTGATACCAGACAACGAATTGAAAGCAAAAATACAAGAGTTCATTAGGTCCAAAGAATCGAAGAGTGGGAAAAGCCCAAGCACGCAGAGCAGCAAGACTACAATACCAATTCACCACAACATATGGTATGCTAGTTTGATTACATCTTTGTTAATTTTAACAATACTGTTAGTTTTTGTGATATGGATGTATGCTTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1000

Amino Acids

112.78

Weight (kDa)

6.01

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	254 - 865	3.5e-180	Ubiquitin elongating factor core
U-box	PF04564	881 - 952	8.9e-31	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2729
Acc16I	TGCGCA	1 cut(s)	1024
Acc36I	ACCTGC	2 cut(s)	1323, 2152
AccB1I	GGYRCC	1 cut(s)	680
AccI	GTMKAC	3 cut(s)	111, 2140, 2418
AccII	CGCG	1 cut(s)	2522
AccIII	TCCGGA	1 cut(s)	1708
AciI	CCGC	6 cut(s)	1055, 1074, 1079, 2520, 2522, 2792
AclI	AACGTT	1 cut(s)	1694
AclWI	GGATC	7 cut(s)	181, 1004, 1017, 1667, 2681, 2694, 2759
AcoI	YGGCCR	2 cut(s)	733, 2726
AcsI	RAATTY	3 cut(s)	415, 1113, 1574
AcuI	CTGAAG	2 cut(s)	2235, 2643
AfaI	GTAC	6 cut(s)	242, 365, 857, 1479, 1962, 2672
AfeI	AGCGCT	1 cut(s)	1225
AfiI	CCNNNNNNNGG	4 cut(s)	407, 1507, 2185, 2287
AflIII	ACRYGT	1 cut(s)	2796
AgeI	ACCGGT	1 cut(s)	1500
AjnI	CCWGG	3 cut(s)	406, 514, 1365
AjuI	GAANNNNNNNTTGG	2 cut(s)	2616, 2648
Alw21I	GWGCWC	3 cut(s)	997, 1275, 1821
Alw26I	GTCTC	5 cut(s)	223, 593, 693, 1101, 1833
AlwI	GGATC	7 cut(s)	181, 1004, 1017, 1667, 2681, 2694, 2759
Ama87I	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
Aor13HI	TCCGGA	1 cut(s)	1708
Aor51HI	AGCGCT	1 cut(s)	1225
AoxI	GGCC	6 cut(s)	733, 895, 1076, 2556, 2610, 2726
ApoI	RAATTY	3 cut(s)	415, 1113, 1574
ArsI	GACNNNNNNTTYG	4 cut(s)	533, 565, 2444, 2476
AsiGI	ACCGGT	1 cut(s)	1500
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	1025, 1226
AspS9I	GGNCC	6 cut(s)	562, 764, 1076, 2339, 2556, 2847
AsuC2I	CCSGG	3 cut(s)	389, 1636, 1773
AsuHPI	GGTGA	6 cut(s)	70, 692, 2162, 2381, 2555, 2903
AvaI	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
AvaII	GGWCC	4 cut(s)	562, 764, 2339, 2847
BaeGI	GKGCMC	2 cut(s)	787, 1568
BamHI	GGATCC	2 cut(s)	1009, 2686
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	3 cut(s)	87, 652, 997
BbsI	GAAGAC	1 cut(s)	2484
Bbv12I	GWGCWC	3 cut(s)	997, 1275, 1821
BbvCI	CCTCAGC	1 cut(s)	2592
BceAI	ACGGC	3 cut(s)	141, 436, 720
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	3 cut(s)	408, 516, 1367
BclI	TGATCA	2 cut(s)	2040, 2403
BcnI	CCSGG	3 cut(s)	389, 1636, 1773
BcoDI	GTCTC	5 cut(s)	223, 593, 693, 1101, 1833
BfaI	CTAG	6 cut(s)	245, 402, 1520, 1965, 2657, 2931
BfmI	CTRYAG	2 cut(s)	53, 129
BfoI	RGCGCY	1 cut(s)	1227
BfuAI	ACCTGC	2 cut(s)	1323, 2152
BglII	AGATCT	1 cut(s)	2227
BlpI	GCTNAGC	2 cut(s)	1398, 1935
Bme1390I	CCNGG	6 cut(s)	389, 408, 516, 1367, 1636, 1773
Bme18I	GGWCC	4 cut(s)	562, 764, 2339, 2847
BmeT110I	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
BmgT120I	GGNCC	6 cut(s)	562, 764, 1076, 2339, 2556, 2847
BmiI	GGNNCC	7 cut(s)	386, 564, 682, 1011, 1724, 2584, 2688
BmrFI	CCNGG	6 cut(s)	389, 408, 516, 1367, 1636, 1773
BmsI	GCATC	5 cut(s)	1078, 1589, 1597, 1758, 2752
BpiI	GAAGAC	1 cut(s)	2484
BpmI	CTGGAG	1 cut(s)	1169
Bpu10I	CCTNAGC	2 cut(s)	1995, 2592
Bpu1102I	GCTNAGC	2 cut(s)	1398, 1935
BpuEI	CTTGAG	2 cut(s)	1853, 2551
BpuMI	CCSGG	3 cut(s)	389, 1636, 1773
Bsa29I	ATCGAT	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	8 cut(s)	27, 515, 704, 736, 1366, 1611, 2520, 2613
BsaWI	WCCGGW	2 cut(s)	1500, 1708
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 1507, 2185, 2287
Bse118I	RCCGGY	2 cut(s)	1500, 2724
Bse1I	ACTGG	5 cut(s)	1888, 2106, 2135, 2690, 2729
Bse3DI	GCAATG	1 cut(s)	1438
Bse8I	GATNNNNATC	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	1708
BseBI	CCWGG	3 cut(s)	408, 516, 1367
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	8 cut(s)	27, 515, 704, 736, 1366, 1611, 2520, 2613
BseGI	GGATG	9 cut(s)	490, 532, 796, 1041, 1675, 1876, 1917, 2530, 2991
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	407, 1507, 2185, 2287
BseMI	GCAATG	1 cut(s)	1438
BseNI	ACTGG	5 cut(s)	1888, 2106, 2135, 2690, 2729
BseRI	GAGGAG	4 cut(s)	47, 902, 1788, 2018
BseSI	GKGCMC	2 cut(s)	787, 1568
BseYI	CCCAGC	1 cut(s)	673
BsgI	GTGCAG	1 cut(s)	2613
Bsh1236I	CGCG	1 cut(s)	2522
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	6 cut(s)	735, 897, 1078, 2558, 2612, 2728
BshNI	GGYRCC	1 cut(s)	680
BshTI	ACCGGT	1 cut(s)	1500
BshVI	ATCGAT	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	3 cut(s)	997, 1275, 1821
BsiHKCI	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
BsiSI	CCGG	7 cut(s)	389, 1501, 1636, 1709, 1772, 1921, 2725
BsiWI	CGTACG	2 cut(s)	363, 855
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	4 cut(s)	407, 1507, 2185, 2287
BsmAI	GTCTC	5 cut(s)	223, 593, 693, 1101, 1833
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	6 cut(s)	735, 897, 1078, 2558, 2612, 2728
BsoBI	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
Bsp1286I	GDGCHC	7 cut(s)	87, 652, 787, 997, 1275, 1568, 1821
Bsp13I	TCCGGA	1 cut(s)	1708
Bsp1407I	TGTACA	1 cut(s)	1477
Bsp1720I	GCTNAGC	2 cut(s)	1398, 1935
Bsp19I	CCATGG	1 cut(s)	1611
BspACI	CCGC	6 cut(s)	1055, 1074, 1079, 2520, 2522, 2792
BspANI	GGCC	6 cut(s)	735, 897, 1078, 2558, 2612, 2728
BspDI	ATCGAT	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	1708
BspFNI	CGCG	1 cut(s)	2522
BspHI	TCATGA	1 cut(s)	1257
BspLI	GGNNCC	7 cut(s)	386, 564, 682, 1011, 1724, 2584, 2688
BspMAI	CTGCAG	2 cut(s)	57, 133
BspMI	ACCTGC	2 cut(s)	1323, 2152
BspPI	GGATC	7 cut(s)	181, 1004, 1017, 1667, 2681, 2694, 2759
BspT107I	GGYRCC	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	1438
BsrFI	RCCGGY	2 cut(s)	1500, 2724
BsrGI	TGTACA	1 cut(s)	1477
BsrI	ACTGG	5 cut(s)	1888, 2106, 2135, 2690, 2729
BssAI	RCCGGY	2 cut(s)	1500, 2724
BssECI	CCNNGG	8 cut(s)	27, 515, 704, 736, 1366, 1611, 2520, 2613
BssT1I	CCWWGG	3 cut(s)	27, 704, 1611
Bst2UI	CCWGG	3 cut(s)	408, 516, 1367
Bst6I	CTCTTC	4 cut(s)	1314, 1995, 2180, 2855
BstAPI	GCANNNNNTGC	1 cut(s)	1352
BstAUI	TGTACA	1 cut(s)	1477
BstBAI	YACGTR	1 cut(s)	859
BstC8I	GCNNGC	7 cut(s)	342, 1076, 1485, 2241, 2305, 2309, 2882
BstDSI	CCRYGG	3 cut(s)	736, 1611, 2520
BstEII	GGTNACC	1 cut(s)	1139
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	9 cut(s)	490, 532, 796, 1041, 1675, 1876, 1917, 2530, 2991
BstFNI	CGCG	1 cut(s)	2522
BstH2I	RGCGCY	1 cut(s)	1227
BstHHI	GCGC	2 cut(s)	1025, 1226
BstMAI	GTCTC	5 cut(s)	223, 593, 693, 1101, 1833
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	8 cut(s)	1075, 1175, 1352, 2597, 2609, 2618, 2627, 2886
BstNI	CCWGG	3 cut(s)	408, 516, 1367
BstNSI	RCATGY	2 cut(s)	1178, 2800
BstPI	GGTNACC	1 cut(s)	1139
BstSCI	CCNGG	6 cut(s)	387, 406, 514, 1365, 1634, 1771
BstSFI	CTRYAG	2 cut(s)	53, 129
BstSLI	GKGCMC	2 cut(s)	787, 1568
BstUI	CGCG	1 cut(s)	2522
BstV2I	GAAGAC	1 cut(s)	2484
BstX2I	RGATCY	4 cut(s)	1009, 1659, 2227, 2686
BstYI	RGATCY	4 cut(s)	1009, 1659, 2227, 2686
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	6 cut(s)	735, 897, 1078, 2558, 2612, 2728
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	3 cut(s)	736, 1611, 2520
BtgZI	GCGATG	1 cut(s)	1479
BtsCI	GGATG	9 cut(s)	490, 532, 796, 1041, 1675, 1876, 1917, 2530, 2991
BtsIMutI	CAGTG	4 cut(s)	486, 787, 879, 1057
BveI	ACCTGC	2 cut(s)	1323, 2152
Cac8I	GCNNGC	7 cut(s)	342, 1076, 1485, 2241, 2305, 2309, 2882
CciI	TCATGA	1 cut(s)	1257
CfoI	GCGC	2 cut(s)	1025, 1226
Cfr10I	RCCGGY	2 cut(s)	1500, 2724
Cfr13I	GGNCC	6 cut(s)	562, 764, 1076, 2339, 2556, 2847
Cfr42I	CCGCGG	1 cut(s)	2523
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	3 cut(s)	426, 2126, 2627
Csp6I	GTAC	6 cut(s)	241, 364, 856, 1478, 1961, 2671
CspAI	ACCGGT	1 cut(s)	1500
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviQI	GTAC	6 cut(s)	241, 364, 856, 1478, 1961, 2671
DraI	TTTAAA	3 cut(s)	1339, 1543, 2077
DrdI	GACNNNNNNGTC	1 cut(s)	2729
DseDI	GACNNNNNNGTC	1 cut(s)	2729
EaeI	YGGCCR	2 cut(s)	733, 2726
Eam1104I	CTCTTC	4 cut(s)	1314, 1995, 2180, 2855
EarI	CTCTTC	4 cut(s)	1314, 1995, 2180, 2855
Ecl136II	GAGCTC	1 cut(s)	995
Eco130I	CCWWGG	3 cut(s)	27, 704, 1611
Eco147I	AGGCCT	1 cut(s)	2612
Eco24I	GRGCYC	3 cut(s)	87, 652, 997
Eco47I	GGWCC	4 cut(s)	562, 764, 2339, 2847
Eco47III	AGCGCT	1 cut(s)	1225
Eco53kI	GAGCTC	1 cut(s)	995
Eco57I	CTGAAG	2 cut(s)	2235, 2643
Eco88I	CYCGRG	5 cut(s)	953, 1403, 1943, 2148, 2372
Eco91I	GGTNACC	1 cut(s)	1139
EcoICRI	GAGCTC	1 cut(s)	995
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	764, 2339
EcoO65I	GGTNACC	1 cut(s)	1139
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	406, 514, 1365
EcoT14I	CCWWGG	3 cut(s)	27, 704, 1611
EcoT38I	GRGCYC	3 cut(s)	87, 652, 997
ErhI	CCWWGG	3 cut(s)	27, 704, 1611
Esp3I	CGTCTC	1 cut(s)	223
FalI	AAGNNNNNCTT	4 cut(s)	1332, 1364, 2616, 2648
FaqI	GGGAC	1 cut(s)	424
FauI	CCCGC	1 cut(s)	1067
FauNDI	CATATG	2 cut(s)	999, 2921
FbaI	TGATCA	2 cut(s)	2040, 2403
FblI	GTMKAC	3 cut(s)	111, 2140, 2418
FokI	GGATG	9 cut(s)	497, 539, 783, 1048, 1682, 1883, 1904, 2537, 2998
FriOI	GRGCYC	3 cut(s)	87, 652, 997
FspBI	CTAG	6 cut(s)	245, 402, 1520, 1965, 2657, 2931
FspI	TGCGCA	1 cut(s)	1024
GlaI	GCGC	2 cut(s)	1024, 1225
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	1169
HaeII	RGCGCY	1 cut(s)	1227
HaeIII	GGCC	6 cut(s)	735, 897, 1078, 2558, 2612, 2728
HapII	CCGG	7 cut(s)	389, 1501, 1636, 1709, 1772, 1921, 2725
HgaI	GACGC	3 cut(s)	426, 2126, 2627
HhaI	GCGC	2 cut(s)	1025, 1226
Hin6I	GCGC	2 cut(s)	1023, 1224
HinP1I	GCGC	2 cut(s)	1023, 1224
HincII	GTYRAC	2 cut(s)	1881, 2141
HindII	GTYRAC	2 cut(s)	1881, 2141
HindIII	AAGCTT	1 cut(s)	1937
HpaII	CCGG	7 cut(s)	389, 1501, 1636, 1709, 1772, 1921, 2725
HphI	GGTGA	6 cut(s)	70, 692, 2162, 2381, 2555, 2903
Hpy166II	GTNNAC	6 cut(s)	112, 512, 1881, 2141, 2419, 2673
Hpy8I	GTNNAC	6 cut(s)	112, 512, 1881, 2141, 2419, 2673
Hpy99I	CGWCG	1 cut(s)	2142
HpyAV	CCTTC	7 cut(s)	568, 821, 1428, 2002, 2152, 2677, 2712
HpyCH4IV	ACGT	5 cut(s)	262, 858, 1562, 1694, 2213
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1075, 1175, 1352, 2597, 2609, 2618, 2627, 2886
HpySE526I	ACGT	5 cut(s)	262, 858, 1562, 1694, 2213
HspAI	GCGC	2 cut(s)	1023, 1224
Kpn2I	TCCGGA	1 cut(s)	1708
Ksp22I	TGATCA	2 cut(s)	2040, 2403
KspI	CCGCGG	1 cut(s)	2523
LmnI	GCTCC	2 cut(s)	1801, 2272
LweI	GCATC	5 cut(s)	1078, 1589, 1597, 1758, 2752
MaeI	CTAG	6 cut(s)	245, 402, 1520, 1965, 2657, 2931
MaeII	ACGT	5 cut(s)	262, 858, 1562, 1694, 2213
MaeIII	GTNAC	4 cut(s)	539, 859, 1139, 1192
MfeI	CAATTG	3 cut(s)	2330, 2399, 2504
MflI	RGATCY	4 cut(s)	1009, 1659, 2227, 2686
MhlI	GDGCHC	7 cut(s)	87, 652, 787, 997, 1275, 1568, 1821
MlyI	GAGTC	4 cut(s)	191, 536, 732, 1160
MmeI	TCCRAC	3 cut(s)	18, 540, 1647
MroI	TCCGGA	1 cut(s)	1708
MroXI	GAANNNNTTC	1 cut(s)	396
MslI	CAYNNNNRTG	4 cut(s)	780, 1561, 1974, 2678
MspA1I	CMGCKG	4 cut(s)	677, 842, 2468, 2522
MspI	CCGG	7 cut(s)	389, 1501, 1636, 1709, 1772, 1921, 2725
MspR9I	CCNGG	6 cut(s)	389, 408, 516, 1367, 1636, 1773
MunI	CAATTG	3 cut(s)	2330, 2399, 2504
MvaI	CCWGG	3 cut(s)	408, 516, 1367
MvnI	CGCG	1 cut(s)	2522
MwoI	GCNNNNNNNGC	8 cut(s)	1075, 1175, 1352, 2597, 2609, 2618, 2627, 2886
NciI	CCSGG	3 cut(s)	389, 1636, 1773
NcoI	CCATGG	1 cut(s)	1611
NdeI	CATATG	2 cut(s)	999, 2921
NlaIV	GGNNCC	7 cut(s)	386, 564, 682, 1011, 1724, 2584, 2688
NmeAIII	GCCGAG	1 cut(s)	2134
NmuCI	GTSAC	2 cut(s)	539, 859
NsbI	TGCGCA	1 cut(s)	1024
NspI	RCATGY	2 cut(s)	1178, 2800
PaeR7I	CTCGAG	4 cut(s)	953, 1403, 1943, 2148
PagI	TCATGA	1 cut(s)	1257
PceI	AGGCCT	1 cut(s)	2612
PciI	ACATGT	1 cut(s)	2796
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 860, 2146
PdmI	GAANNNNTTC	1 cut(s)	396
Pfl23II	CGTACG	2 cut(s)	363, 855
PfoI	TCCNGGA	1 cut(s)	1634
PinAI	ACCGGT	1 cut(s)	1500
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	4 cut(s)	190, 536, 731, 1159
PpsI	GAGTC	4 cut(s)	190, 536, 731, 1159
Ppu21I	YACGTR	1 cut(s)	859
PpuMI	RGGWCCY	2 cut(s)	764, 2339
PscI	ACATGT	1 cut(s)	2796
Psp124BI	GAGCTC	1 cut(s)	997
Psp1406I	AACGTT	1 cut(s)	1694
Psp5II	RGGWCCY	2 cut(s)	764, 2339
Psp6I	CCWGG	3 cut(s)	406, 514, 1365
PspEI	GGTNACC	1 cut(s)	1139
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	3 cut(s)	406, 514, 1365
PspLI	CGTACG	2 cut(s)	363, 855
PspN4I	GGNNCC	7 cut(s)	386, 564, 682, 1011, 1724, 2584, 2688
PspPI	GGNCC	6 cut(s)	562, 764, 1076, 2339, 2556, 2847
PspPPI	RGGWCCY	2 cut(s)	764, 2339
PsrI	GAACNNNNNNTAC	2 cut(s)	1461, 1493
PstI	CTGCAG	2 cut(s)	57, 133
PsuI	RGATCY	4 cut(s)	1009, 1659, 2227, 2686
PvuI	CGATCG	1 cut(s)	199
PvuII	CAGCTG	3 cut(s)	677, 842, 2468
RsaI	GTAC	6 cut(s)	242, 365, 857, 1479, 1962, 2672
RsaNI	GTAC	6 cut(s)	241, 364, 856, 1478, 1961, 2671
RseI	CAYNNNNRTG	4 cut(s)	780, 1561, 1974, 2678
SacI	GAGCTC	1 cut(s)	997
SacII	CCGCGG	1 cut(s)	2523
SalI	GTCGAC	1 cut(s)	2139
Sau96I	GGNCC	6 cut(s)	562, 764, 1076, 2339, 2556, 2847
SchI	GAGTC	4 cut(s)	191, 536, 732, 1160
ScrFI	CCNGG	6 cut(s)	389, 408, 516, 1367, 1636, 1773
SduI	GDGCHC	7 cut(s)	87, 652, 787, 997, 1275, 1568, 1821
SfaNI	GCATC	5 cut(s)	1078, 1589, 1597, 1758, 2752
SfcI	CTRYAG	2 cut(s)	53, 129
Sfr274I	CTCGAG	4 cut(s)	953, 1403, 1943, 2148
Sfr303I	CCGCGG	1 cut(s)	2523
SgrBI	CCGCGG	1 cut(s)	2523
SinI	GGWCC	4 cut(s)	562, 764, 2339, 2847
SlaI	CTCGAG	4 cut(s)	953, 1403, 1943, 2148
SmiMI	CAYNNNNRTG	4 cut(s)	780, 1561, 1974, 2678
SmlI	CTYRAG	6 cut(s)	953, 1403, 1832, 1943, 2148, 2530
SmoI	CTYRAG	6 cut(s)	953, 1403, 1832, 1943, 2148, 2530
SseBI	AGGCCT	1 cut(s)	2612
SsiI	CCGC	6 cut(s)	1055, 1074, 1079, 2520, 2522, 2792
SspI	AATATT	1 cut(s)	1232
SspMI	CTAG	6 cut(s)	245, 402, 1520, 1965, 2657, 2931
SstI	GAGCTC	1 cut(s)	997
StuI	AGGCCT	1 cut(s)	2612
StyD4I	CCNGG	6 cut(s)	387, 406, 514, 1365, 1634, 1771
StyI	CCWWGG	3 cut(s)	27, 704, 1611
TaiI	ACGT	5 cut(s)	265, 861, 1565, 1697, 2216
TatI	WGTACW	2 cut(s)	1477, 2670
TauI	GCSGC	2 cut(s)	1081, 2522
TscAI	CASTG	4 cut(s)	486, 787, 879, 1057
TseFI	GTSAC	2 cut(s)	539, 859
Tsp45I	GTSAC	2 cut(s)	539, 859
TspRI	CASTG	4 cut(s)	486, 787, 879, 1057
VpaK11BI	GGWCC	4 cut(s)	562, 764, 2339, 2847
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	3 cut(s)	415, 1113, 1574
XceI	RCATGY	2 cut(s)	1178, 2800
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 1363
XhoI	CTCGAG	4 cut(s)	953, 1403, 1943, 2148
XmiI	GTMKAC	3 cut(s)	111, 2140, 2418
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	6 cut(s)	245, 402, 1520, 1965, 2657, 2931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.