Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

6817201 .. 6823379

Gene Structure 6179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGTCGACCCCAAAACCGCAGAGGTCTAAAGAAGAGCTGGAGGACATAATCCTCCGGAAAATCTTCCAGGTCTCGCTGACGGAGCCGGCCGAGCCCAATTCCCGAGTCGTCTACTTGGAGATGACGGCGGCGGAGATTCTCAGCGAGGGCAAGCCGATGAGGCTCACGCGCGACCTCATGGAGTCGATCCTGATCGACCGCTTAATGGGTAGCTTCGCCCCCGCCGCCGTGGAGCCGCCGTTTCAGTACCTAGTCGGGTGTTACCGACGCGCCTACGACGAGGGTCGGAAAATCACCGTCATGAAAGATAAGAACTTGAGGGCGGATATGGAGTCCGTGATTAAACAGGCGAAGAAGCTTTCGGTTTCGTATTGTAGGATCCATTTAGGGAACCCGGAGGCGTTTCCGGGTTCGGGTTCGGGTTCGGATCCGGCGACGGCGTCAAATGCGTCGCCGTTGCTGCCGTTGATTTTTTCCGAGGTGGGGAGCGGCTCGGTGGATGAGTTTGGAGGGAGTTCTAGTAGTAGTAGTGGAGTTCAGTGCCCACCTGGGTTTTTGGATGACTTCTTTAGGGACTCGGATTTCGATAGCTTGGACCCAATTTTGAAGGGTTTGTATGAGGAGCTTAGGGAGATTGTGCTTAAGGTTTCGGCATTGGGGAATTTCCAGCAGCCATTGAGGGCTCTGTTGTATTTGGTTAGCTTTCCTGCTGGGGCTAAGAGTCTGGTGAATCACCCGTGGTGGATTCCGAAAGGTGTTTACTTGAATGGGAGGGTTATCGAAAGGACTAGTATTTTGGGTCCTTTTTTTCATGTCAGTGCTTTGCCTGATCATCCTATTTTCAAGAGCCAGCCGGATGTGGGGCAGCAGTGCTTTTCAGAAAATTCTAAGGATAGTGATCTGCGATCTTCGTACGTCACAATAAAGACACTTATGAATAGTTTATATGACGGCCTCGCAGAAGTTCTCCTCAAACTATTAAAAAATGCAGAGACCCGTGAGAGTGTTCTTGAGTATCTTGCTGAGGTTATCAACAAAAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGACTTTGCGAGCCATTTCTGGATCCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTCTATGGTGACCGGCTGGAGTTAAGAGGTTTGACTGCTCTACATGCATCATCTGAAGAAGTTACTGAATGGATTAACCAAGATAGTCTCGGGAATGCTGGTGGTGATGGTCAAAATCGCCTTTCACAATCCCAAGAAGCCACCAGCTCTGGCAGTAATATATCTCAACCTTCTAACATGAAGCCAAGCGGCGAAAAATCTAAATCATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTGCTCAACCTGGGTTTATTGAAAGCACTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGTCTGAAGATACACTTAAAGCCTTAAAAAGACAGGCACCTTCTCCTCAATTGAAGATTGATATAGCTCGCCTTGAAAAAGAGTTAGAGTTGTGTAAACAGGAAAAGCGTTGTCATGAAGCTCAGATACTCACGGATGAACCACTTCTAGAGCGTGCTCTTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTTTGCCGTCAACTTGCCCCGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTCGCTTCCCGGATGCCAAAAGCATTTCATGGGATCTTGTTGGATGAATTTATGAACTTTATTATAATGTTCATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAACTGCTTGATGCCCCGTCCAAGTCATCAATCACCTGCTGCTACAGCTGCTGCTACTAGCCTGTTCGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTCTTGAAATTATATGTAGACATTGAGTTCACTGGTTCTCATACACAGTTCTATGACAAGTTCAACATCCGCCACAATATTGCTGAACTTCTTGAATATCTTTGGCAAGTCCCCAGTCATCGAAATGCTTGGAAACAGATTGCTAGGGAAGAAGAGAAAGGCGTATATTTGAATTTCTTAAACTTCTTGATCAATGATAGTATATATCTTCTGGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCAAACACCGCAGAATGGGAGCGTAGACCTGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCACTCTCAAGAAAATATTATCCGAATTGATATGAAATTAGCAAATGAAGATGTGAGTATGTTGGCATTTACTACAGAACAAATTACAGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCAAGTATGCTCAATTATTTTTTGTTGCAACTAGTAGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCAGAGAAGTATGAGTTCCGCCCAAAGCAATTGCTTAAGCAGATTGTGTACATATATGTTAATCTGGCAAGAGGTGATACGGAAAATATCTTTCCAGCTGCCATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTTAGTGCTGCTGCGGATGTCCTAAGGAGAATTGGTGAAGATGGAAGGGTCATACAGGAGTTTGTTGAGCTTGGTTCCAAAGCAAAGGTTGCTGCTTCTGAGGCCATGGACGCTGAAGCTGTTCTTGGGGATATACCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCGTTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCAGATAATGATTTGAAGGCAAAAATACAAGAGTTTATTAGGTCGCAACAGTCGAAGCGTGGGGAAAGCCTTAGCATGCAGAGTGACAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1036

Amino Acids

117.12

Weight (kDa)

5.5

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	266 - 922	2.2e-202	Ubiquitin elongating factor core
U-box	PF04564	939 - 1010	1.1e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1853
AarI	CACCTGC	1 cut(s)	1963
AasI	GACNNNNNNGTC	1 cut(s)	2903
Acc36I	ACCTGC	2 cut(s)	1963, 2326
AccB1I	GGYRCC	2 cut(s)	1528, 1992
AccBSI	CCGCTC	1 cut(s)	489
AccI	GTMKAC	5 cut(s)	5, 111, 2043, 2314, 2895
AccII	CGCG	3 cut(s)	169, 171, 270
AccIII	TCCGGA	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	7 cut(s)	661, 883, 1150, 1736, 1835, 2197, 2825
AcuI	CTGAAG	3 cut(s)	1263, 1518, 2817
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	5 cut(s)	248, 914, 1479, 2594, 2846
AfiI	CCNNNNNNNGG	6 cut(s)	205, 413, 483, 860, 1669, 2304
AflII	CTTAAG	2 cut(s)	641, 2579
AflIII	ACRYGT	1 cut(s)	2970
AgeI	ACCGGT	1 cut(s)	1662
AhlI	ACTAGT	2 cut(s)	788, 2506
AjnI	CCWGG	3 cut(s)	66, 547, 1437
AjuI	GAANNNNNNNTTGG	2 cut(s)	2790, 2822
Alw21I	GWGCWC	2 cut(s)	1434, 1651
Alw26I	GTCTC	4 cut(s)	76, 986, 1280, 2007
AlwNI	CAGNNNCTG	1 cut(s)	1970
Ama87I	CYCGRG	3 cut(s)	102, 1277, 2006
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	4 cut(s)	87, 952, 2784, 2900
ApoI	RAATTY	7 cut(s)	661, 883, 1150, 1736, 1835, 2197, 2825
ArsI	GACNNNNNNTTYG	4 cut(s)	566, 598, 778, 810
AsiGI	ACCGGT	1 cut(s)	1662
Asp700I	GAANNNNTTC	3 cut(s)	62, 1635, 2802
AspLEI	GCGC	2 cut(s)	171, 272
AspS9I	GGNCC	3 cut(s)	595, 800, 2513
AsuC2I	CCSGG	3 cut(s)	395, 408, 1798
AsuHPI	GGTGA	8 cut(s)	286, 725, 739, 1208, 1304, 1944, 2630, 2729
AsuII	TTCGAA	1 cut(s)	1986
AvaI	CYCGRG	3 cut(s)	102, 1277, 2006
AvaII	GGWCC	3 cut(s)	595, 800, 2513
AxyI	CCTNAGG	1 cut(s)	2705
BaeGI	GKGCMC	2 cut(s)	545, 1995
BamHI	GGATCC	4 cut(s)	378, 427, 1144, 2860
BanI	GGYRCC	2 cut(s)	1528, 1992
BanII	GRGCYC	3 cut(s)	96, 685, 1054
BarI	GAAGNNNNNNTAC	2 cut(s)	1602, 1634
Bbv12I	GWGCWC	2 cut(s)	1434, 1651
BbvCI	CCTCAGC	1 cut(s)	1023
BccI	CCATC	8 cut(s)	1289, 1663, 1900, 2455, 2651, 2654, 2717, 2964
BceAI	ACGGC	8 cut(s)	141, 212, 223, 439, 448, 453, 967, 1702
BciT130I	CCWGG	3 cut(s)	68, 549, 1439
BclI	TGATCA	2 cut(s)	829, 2214
BcnI	CCSGG	3 cut(s)	395, 408, 1798
BcoDI	GTCTC	4 cut(s)	76, 986, 1280, 2007
BcuI	ACTAGT	2 cut(s)	788, 2506
BfmI	CTRYAG	2 cut(s)	1962, 2424
BfrI	CTTAAG	2 cut(s)	641, 2579
BfuAI	ACCTGC	2 cut(s)	1963, 2326
BglI	GCCNNNNNGGC	1 cut(s)	160
Bme1390I	CCNGG	6 cut(s)	68, 395, 408, 549, 1439, 1798
Bme18I	GGWCC	3 cut(s)	595, 800, 2513
BmeT110I	CYCGRG	3 cut(s)	102, 1277, 2006
BmgT120I	GGNCC	3 cut(s)	595, 800, 2513
BmrFI	CCNGG	6 cut(s)	68, 395, 408, 549, 1439, 1798
BmrI	ACTGGG	1 cut(s)	2133
BmsI	GCATC	7 cut(s)	1244, 1480, 1751, 1759, 1791, 1920, 2926
BmuI	ACTGGG	1 cut(s)	2133
BoxI	GACNNNNGTC	1 cut(s)	282
BpmI	CTGGAG	3 cut(s)	59, 1226, 2297
Bpu10I	CCTNAGC	3 cut(s)	626, 1023, 3050
Bpu14I	TTCGAA	1 cut(s)	1986
BpuEI	CTTGAG	4 cut(s)	337, 1031, 2307, 2343
BpuMI	CCSGG	3 cut(s)	395, 408, 1798
BsaBI	GATNNNNATC	2 cut(s)	191, 897
BsaHI	GRCGYC	1 cut(s)	440
BsaI	GGTCTC	2 cut(s)	76, 986
BsaJI	CCNNGG	8 cut(s)	228, 477, 548, 737, 1438, 1731, 1773, 2787
BsaWI	WCCGGW	2 cut(s)	54, 1662
BsaXI	ACNNNNNCTCC	6 cut(s)	224, 254, 505, 535, 2701, 2731
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 413, 483, 860, 1669, 2304
Bse118I	RCCGGY	4 cut(s)	85, 1200, 1662, 2898
Bse1I	ACTGG	4 cut(s)	2062, 2139, 2280, 2864
Bse21I	CCTNAGG	1 cut(s)	2705
Bse8I	GATNNNNATC	2 cut(s)	191, 897
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	68, 549, 1439
BseDI	CCNNGG	8 cut(s)	228, 477, 548, 737, 1438, 1731, 1773, 2787
BseJI	GATNNNNATC	2 cut(s)	191, 897
BseLI	CCNNNNNNNGG	6 cut(s)	205, 413, 483, 860, 1669, 2304
BseMII	CTCAG	7 cut(s)	154, 1014, 1120, 1628, 2274, 2448, 2772
BseNI	ACTGG	4 cut(s)	2062, 2139, 2280, 2864
BseRI	GAGGAG	3 cut(s)	635, 959, 1527
BseSI	GKGCMC	2 cut(s)	545, 1995
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	3 cut(s)	169, 171, 270
Bsh1285I	CGRYCG	2 cut(s)	90, 199
BshFI	GGCC	4 cut(s)	89, 954, 2786, 2902
BshNI	GGYRCC	2 cut(s)	1528, 1992
BshTI	ACCGGT	1 cut(s)	1662
BsiEI	CGRYCG	2 cut(s)	90, 199
BsiHKAI	GWGCWC	2 cut(s)	1434, 1651
BsiHKCI	CYCGRG	3 cut(s)	102, 1277, 2006
BsiWI	CGTACG	1 cut(s)	912
BslFI	GGGAC	3 cut(s)	587, 1178, 2120
BslI	CCNNNNNNNGG	6 cut(s)	205, 413, 483, 860, 1669, 2304
BsmAI	GTCTC	4 cut(s)	76, 986, 1280, 2007
BsmFI	GGGAC	3 cut(s)	587, 1178, 2120
BsmI	GAATGC	2 cut(s)	1288, 1412
BsnI	GGCC	4 cut(s)	89, 954, 2786, 2902
Bso31I	GGTCTC	2 cut(s)	76, 986
BsoBI	CYCGRG	3 cut(s)	102, 1277, 2006
Bsp119I	TTCGAA	1 cut(s)	1986
Bsp1286I	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1434, 1651, 1995
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	2592
Bsp19I	CCATGG	2 cut(s)	1773, 2787
BspANI	GGCC	4 cut(s)	89, 954, 2786, 2902
BspCNI	CTCAG	7 cut(s)	153, 1015, 1119, 1627, 2275, 2449, 2773
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	3 cut(s)	169, 171, 270
BspHI	TCATGA	3 cut(s)	300, 1416, 1606
BspMI	ACCTGC	2 cut(s)	1963, 2326
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	1986
BspT107I	GGYRCC	2 cut(s)	1528, 1992
BspTI	CTTAAG	2 cut(s)	641, 2579
BspTNI	GGTCTC	2 cut(s)	76, 986
BsrBI	CCGCTC	1 cut(s)	489
BsrFI	RCCGGY	4 cut(s)	85, 1200, 1662, 2898
BsrGI	TGTACA	1 cut(s)	2592
BsrI	ACTGG	4 cut(s)	2062, 2139, 2280, 2864
BssAI	RCCGGY	4 cut(s)	85, 1200, 1662, 2898
BssECI	CCNNGG	8 cut(s)	228, 477, 548, 737, 1438, 1731, 1773, 2787
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	1773, 2787
Bst2UI	CCWGG	3 cut(s)	68, 549, 1439
Bst4CI	ACNGT	6 cut(s)	298, 2001, 2073, 2893, 2951, 3030
Bst6I	CTCTTC	2 cut(s)	27, 2172
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	2 cut(s)	641, 2579
BstAPI	GCANNNNNTGC	1 cut(s)	2771
BstAUI	TGTACA	1 cut(s)	2592
BstBI	TTCGAA	1 cut(s)	1986
BstC8I	GCNNGC	7 cut(s)	87, 152, 851, 1133, 1561, 1647, 3056
BstDSI	CCRYGG	5 cut(s)	228, 737, 1731, 1773, 2787
BstEII	GGTNACC	1 cut(s)	1196
BstFNI	CGCG	3 cut(s)	169, 171, 270
BstHHI	GCGC	2 cut(s)	171, 272
BstMAI	GTCTC	4 cut(s)	76, 986, 1280, 2007
BstMCI	CGRYCG	2 cut(s)	90, 199
BstNI	CCWGG	3 cut(s)	68, 549, 1439
BstNSI	RCATGY	5 cut(s)	1096, 1235, 1489, 2974, 3058
BstPAI	GACNNNNGTC	1 cut(s)	282
BstPI	GGTNACC	1 cut(s)	1196
BstSCI	CCNGG	6 cut(s)	66, 393, 406, 547, 1437, 1796
BstSFI	CTRYAG	2 cut(s)	1962, 2424
BstSLI	GKGCMC	2 cut(s)	545, 1995
BstUI	CGCG	3 cut(s)	169, 171, 270
BstX2I	RGATCY	5 cut(s)	378, 427, 1144, 1821, 2860
BstYI	RGATCY	5 cut(s)	378, 427, 1144, 1821, 2860
BstZI	CGGCCG	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	2705
BsuRI	GGCC	4 cut(s)	89, 954, 2786, 2902
BtgI	CCRYGG	5 cut(s)	228, 737, 1731, 1773, 2787
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	5 cut(s)	545, 823, 875, 1114, 2055
BveI	ACCTGC	2 cut(s)	1963, 2326
Cac8I	GCNNGC	7 cut(s)	87, 152, 851, 1133, 1561, 1647, 3056
CaiI	CAGNNNCTG	1 cut(s)	1970
CciI	TCATGA	3 cut(s)	300, 1416, 1606
CfoI	GCGC	2 cut(s)	171, 272
Cfr10I	RCCGGY	4 cut(s)	85, 1200, 1662, 2898
Cfr13I	GGNCC	3 cut(s)	595, 800, 2513
CseI	GACGC	4 cut(s)	276, 429, 438, 2801
Csp6I	GTAC	5 cut(s)	247, 913, 1478, 2593, 2845
CspAI	ACCGGT	1 cut(s)	1662
CviQI	GTAC	5 cut(s)	247, 913, 1478, 2593, 2845
DraI	TTTAAA	1 cut(s)	1705
DrdI	GACNNNNNNGTC	1 cut(s)	2903
DseDI	GACNNNNNNGTC	1 cut(s)	2903
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	27, 2172
EarI	CTCTTC	2 cut(s)	27, 2172
EciI	GGCGGA	4 cut(s)	146, 338, 2084, 2552
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	1773, 2787
Eco24I	GRGCYC	3 cut(s)	96, 685, 1054
Eco31I	GGTCTC	2 cut(s)	76, 986
Eco47I	GGWCC	3 cut(s)	595, 800, 2513
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	1263, 1518, 2817
Eco81I	CCTNAGG	1 cut(s)	2705
Eco88I	CYCGRG	3 cut(s)	102, 1277, 2006
Eco91I	GGTNACC	1 cut(s)	1196
EcoO109I	RGGNCCY	2 cut(s)	800, 2513
EcoO65I	GGTNACC	1 cut(s)	1196
EcoRI	GAATTC	1 cut(s)	2825
EcoRII	CCWGG	3 cut(s)	66, 547, 1437
EcoT14I	CCWWGG	2 cut(s)	1773, 2787
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	3 cut(s)	96, 685, 1054
ErhI	CCWWGG	2 cut(s)	1773, 2787
FalI	AAGNNNNNCTT	4 cut(s)	1491, 1523, 2790, 2822
FaqI	GGGAC	3 cut(s)	587, 1178, 2120
FauI	CCCGC	2 cut(s)	229, 2351
FbaI	TGATCA	2 cut(s)	829, 2214
FblI	GTMKAC	5 cut(s)	5, 111, 2043, 2314, 2895
FriOI	GRGCYC	3 cut(s)	96, 685, 1054
GlaI	GCGC	2 cut(s)	170, 271
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	3 cut(s)	59, 1226, 2297
HaeIII	GGCC	4 cut(s)	89, 954, 2786, 2902
HgaI	GACGC	4 cut(s)	276, 429, 438, 2801
HhaI	GCGC	2 cut(s)	171, 272
Hin1I	GRCGYC	1 cut(s)	440
Hin6I	GCGC	2 cut(s)	169, 270
HinP1I	GCGC	2 cut(s)	169, 270
HincII	GTYRAC	2 cut(s)	6, 1722
HindII	GTYRAC	2 cut(s)	6, 1722
HindIII	AAGCTT	1 cut(s)	356
HphI	GGTGA	8 cut(s)	286, 725, 739, 1208, 1304, 1944, 2630, 2729
Hpy99I	CGWCG	4 cut(s)	270, 281, 439, 454
HpyAV	CCTTC	8 cut(s)	601, 1368, 1542, 1982, 2721, 2851, 2886, 2989
HpyCH4III	ACNGT	6 cut(s)	298, 2001, 2073, 2893, 2951, 3030
HpyCH4IV	ACGT	1 cut(s)	915
HpyCH4V	TGCA	7 cut(s)	989, 1082, 1235, 1489, 1742, 2503, 3058
HpySE526I	ACGT	1 cut(s)	915
Hsp92I	GRCGYC	1 cut(s)	440
HspAI	GCGC	2 cut(s)	169, 270
Kpn2I	TCCGGA	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	829, 2214
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	6 cut(s)	82, 232, 486, 622, 2308, 2446
LweI	GCATC	7 cut(s)	1244, 1480, 1751, 1759, 1791, 1920, 2926
MaeII	ACGT	1 cut(s)	915
MaeIII	GTNAC	5 cut(s)	260, 916, 1196, 1249, 3062
MbiI	CCGCTC	1 cut(s)	489
MfeI	CAATTG	2 cut(s)	1541, 2573
MflI	RGATCY	5 cut(s)	378, 427, 1144, 1821, 2860
MhlI	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1434, 1651, 1995
MlyI	GAGTC	5 cut(s)	114, 191, 341, 569, 730
MmeI	TCCRAC	2 cut(s)	266, 1809
Mph1103I	ATGCAT	1 cut(s)	1237
MroI	TCCGGA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	3 cut(s)	62, 1635, 2802
MslI	CAYNNNNRTG	4 cut(s)	299, 816, 2148, 2852
MspA1I	CMGCKG	2 cut(s)	1967, 2642
MspCI	CTTAAG	2 cut(s)	641, 2579
MspR9I	CCNGG	6 cut(s)	68, 395, 408, 549, 1439, 1798
MunI	CAATTG	2 cut(s)	1541, 2573
Mva1269I	GAATGC	2 cut(s)	1288, 1412
MvaI	CCWGG	3 cut(s)	68, 549, 1439
MvnI	CGCG	3 cut(s)	169, 171, 270
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	3 cut(s)	395, 408, 1798
NcoI	CCATGG	2 cut(s)	1773, 2787
NgoMIV	GCCGGC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	3 cut(s)	916, 1196, 3062
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	5 cut(s)	1096, 1235, 1489, 2974, 3058
NspV	TTCGAA	1 cut(s)	1986
PaeI	GCATGC	1 cut(s)	3058
PaeR7I	CTCGAG	1 cut(s)	2006
PagI	TCATGA	3 cut(s)	300, 1416, 1606
PaqCI	CACCTGC	1 cut(s)	1963
PciI	ACATGT	1 cut(s)	2970
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	431, 3029
PctI	GAATGC	2 cut(s)	1288, 1412
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	3 cut(s)	62, 1635, 2802
PfeI	GAWTC	6 cut(s)	136, 730, 745, 2023, 2257, 2886
Pfl23II	CGTACG	1 cut(s)	912
PflFI	GACNNNGTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	1796
PinAI	ACCGGT	1 cut(s)	1662
PleI	GAGTC	5 cut(s)	113, 190, 340, 569, 729
PpsI	GAGTC	5 cut(s)	113, 190, 340, 569, 729
PpuMI	RGGWCCY	2 cut(s)	800, 2513
PscI	ACATGT	1 cut(s)	2970
PshAI	GACNNNNGTC	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	1853
Psp5II	RGGWCCY	2 cut(s)	800, 2513
Psp6I	CCWGG	3 cut(s)	66, 547, 1437
PspEI	GGTNACC	1 cut(s)	1196
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	3 cut(s)	66, 547, 1437
PspLI	CGTACG	1 cut(s)	912
PspPI	GGNCC	3 cut(s)	595, 800, 2513
PspPPI	RGGWCCY	2 cut(s)	800, 2513
PstNI	CAGNNNCTG	1 cut(s)	1970
PsuI	RGATCY	5 cut(s)	378, 427, 1144, 1821, 2860
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	1967, 2642
RsaI	GTAC	5 cut(s)	248, 914, 1479, 2594, 2846
RsaNI	GTAC	5 cut(s)	247, 913, 1478, 2593, 2845
RseI	CAYNNNNRTG	4 cut(s)	299, 816, 2148, 2852
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	595, 800, 2513
SchI	GAGTC	5 cut(s)	114, 191, 341, 569, 730
ScrFI	CCNGG	6 cut(s)	68, 395, 408, 549, 1439, 1798
SduI	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1434, 1651, 1995
SfaNI	GCATC	7 cut(s)	1244, 1480, 1751, 1759, 1791, 1920, 2926
SfcI	CTRYAG	2 cut(s)	1962, 2424
Sfr274I	CTCGAG	1 cut(s)	2006
SfuI	TTCGAA	1 cut(s)	1986
SinI	GGWCC	3 cut(s)	595, 800, 2513
SlaI	CTCGAG	1 cut(s)	2006
SmiMI	CAYNNNNRTG	4 cut(s)	299, 816, 2148, 2852
SmlI	CTYRAG	7 cut(s)	316, 641, 1010, 2006, 2322, 2358, 2579
SmoI	CTYRAG	7 cut(s)	316, 641, 1010, 2006, 2322, 2358, 2579
SpeI	ACTAGT	2 cut(s)	788, 2506
SphI	GCATGC	1 cut(s)	3058
SspI	AATATT	2 cut(s)	2104, 2368
StyD4I	CCNGG	6 cut(s)	66, 393, 406, 547, 1437, 1796
StyI	CCWWGG	2 cut(s)	1773, 2787
TaaI	ACNGT	6 cut(s)	298, 2001, 2073, 2893, 2951, 3030
TaiI	ACGT	1 cut(s)	918
TatI	WGTACW	3 cut(s)	1477, 2592, 2844
TauI	GCSGC	5 cut(s)	131, 227, 238, 492, 1380
TfiI	GAWTC	6 cut(s)	136, 730, 745, 2023, 2257, 2886
TscAI	CASTG	5 cut(s)	545, 823, 875, 1114, 2062
TseFI	GTSAC	3 cut(s)	916, 1196, 3062
Tsp45I	GTSAC	3 cut(s)	916, 1196, 3062
TspGWI	ACGGA	5 cut(s)	95, 325, 1640, 2639, 2931
TspRI	CASTG	5 cut(s)	545, 823, 875, 1114, 2062
Tth111I	GACNNNGTC	1 cut(s)	439
Vha464I	CTTAAG	2 cut(s)	641, 2579
VpaK11BI	GGWCC	3 cut(s)	595, 800, 2513
XapI	RAATTY	7 cut(s)	661, 883, 1150, 1736, 1835, 2197, 2825
XbaI	TCTAGA	1 cut(s)	1639
XceI	RCATGY	5 cut(s)	1096, 1235, 1489, 2974, 3058
XhoI	CTCGAG	1 cut(s)	2006
XmiI	GTMKAC	5 cut(s)	5, 111, 2043, 2314, 2895
XmnI	GAANNNNTTC	3 cut(s)	62, 1635, 2802
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.