Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Forward (+)

81296067 .. 81302202

Gene Structure 6136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3099 bp

ATGTCGACCCCAAAACCGCAGAGGTCTAAAGAAGAGCTGGAGGACATAATCCTCCGGAGAATCTTCCAGGTCTCGCTGACGGAGCCGGCCGAGCCCAATTCGCGAGTCGTCTACTTGGAGATGACGGCGGCGGAGATTCTCAGCGAGGGCAAGCCGATGAGGCTCACGCGCGACCTCATGGAGTCGATCCTGATCGACCGTTTAATGGGTAGCTTCGCCGCCGTGGAGCCGCCGTTTCAGTACCTTGTCGGGTGTTACCGACGCGCCTACGACGAGGGTCGGAAAATCACCGTCATGAAAGATAAGAACTTGAGGGCGGATATGGAGTCGGTGATTAAGCAGGCGAAGAAGCTTTCGGTTTCGTATTGTAGGATCCATTTGGGGAACCCGGAGGCGTTTCCGGGTTCGGGTTCGGATCCGGCGACGGCGTCAAATGCGTCGCCGTTGCTGCCGTTGGTTTTTTCCGAGGTGGGGAGCGGCTCGGTGGATGAGTTTGGAGGGAGTTCTAGTACTAGTAGTGGAGTTCAGTGCCCACCTGGGTTTTTGGATGACTTCTTTAGGGACTCGGATTTCGATAGCTTGGACCCAATTTTGAAGGGTTTGTATGAGGAGCTTAGGGAGATTGTGCTCAAGGTTTCGGCATTGGGGAATTTCCAGCAGCCATTGAGGGCTCTGTTGTATTTGGTTAGCTTTCCTGCTGGGGCTAAGAGTCTGGTGAATCACCCGTGGTGGATTCCCAAAGGTGTTTACTTGAATGGGAGGGTTATCGAAAGGACTAGTATTTTGGGTCCTTTTTTTCATGTCAGTGCTCTGCCGGATCATCCTATTTTCAAGAGCCAGCCGGATGTGGGGCAGCAGTGCTTTTCAGAAAATTCTAAGGATAGTGATCTGCGATCTTCGTACGCCACAATAAAGACACTTACGAATAGTCTATATGACGGCCTCGCAGAAGTTCTCCTCAAACTATTAAAAAATGCAGAGACCCGTGAGAGTGTTCTTGAGTATCTTGCTGAGGTTATCAACAAAAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGACTTTGCGAGCCATTTCTGGATCCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTCTATGGTGACCGTCTGGAGTTAAGAGGTTTGACTGCTCTACATGCATCATCTGAAGAAGTTACTGAATGGATTAACAAAGATAGTCTCGGGAATGCTGGTGGTGATGGTCAAAATCGCCTTTCACAATCCCAAGAAGCCACCAGCTCTGGCAGTAATATATCTCAACCTTCTAACATGAAGCCAAGCGGCGAAAAATCTAAATCATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTGCTCAACCTGGGTTTATTGAAGGCACTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGTCTGAAGATACACTTAAAGCCTTGAAAAGACAGGCACCTTCTCCTCAATTGAATATTGATATAGCTCGCCTTGAGAAAGAGTTAGAGTTGTATAAACAGGAAAAGCGTTGTCATGAAGCTCAGATACTCACGGATGAACCACTTTTAGAGCGTGCTCTTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTTTGCCGTCAACTTGCCCCGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTCGCTTCCCGGATGCCAAAAGCATTTCATGGGATCCTGTTGGATGAATTTATGAACTTTATTATAATGTTCATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAATTGCTTGATGCCCCGTCCAAGTCATCAATCACCTGCTGCTACAGCTGCTGCTGCTAGCCTGTTCGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTAGACATTGAGTTCACTGGTTCTCATACACAGTTCTATGACAAGTTCAACATCCGTCACAATATTGCTGAACTTCTTGAATATCTTTGGCAAGTCCCCAGTCATCAAAATGCTTGGAAACAGATTGCTAGGGAAGAAGAGAAAGGCGTATATTTGAATTTCTTAAACTTCTTGATCAATGATAGTATATATCTTCTTGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCAAACACCGCAGAATGGGAGCGTAGACCCGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCACTCTCAAGAAAATATTATCCGAATTGATATGAAGTTAGCAAATGAAGATGTGAGTATGTTGGCATTTACTACGGAACAAATTACAGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCAAGTATGCTCAATTATTTTTTGTTGCAATTAGTAGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCGGAGAAGTATGAGTTCCGCCCAAAGCAATTGCTTAAGCAGATTGTGTACATATATGTTAATCTGGCAAGAGGTGATACGGAAAATATCTTTCCAGCTGCTATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTCAGTGCTGCTGCCGATGTCCTAAGGAGAATTGGTGAAGATGGAAGGGTCATACAGGAGTTTGTTGAGCTTGGTTCCAAAGCCAAGGTTGCTGCTTCTGAGGCCATGGACGCTGAAGCTGTTCTTGGGGATATACCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTGCCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCGGATAATGATTTGAAGGCAAAAATACAAGAGTTTATTAGGTCGCAACAGTCGAAGCGCGGGGAAAGCCTTAGCATGCAGAGTGATAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1032

Amino Acids

116.77

Weight (kDa)

5.47

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	262 - 918	1.5e-201	Ubiquitin elongating factor core
U-box	PF04564	935 - 1006	1.1e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1841
AarI	CACCTGC	1 cut(s)	1951
AasI	GACNNNNNNGTC	1 cut(s)	2891
Acc36I	ACCTGC	1 cut(s)	1951
AccB1I	GGYRCC	2 cut(s)	1516, 1980
AccBSI	CCGCTC	2 cut(s)	477, 2309
AccI	GTMKAC	5 cut(s)	5, 111, 2031, 2302, 2883
AccII	CGCG	5 cut(s)	103, 169, 171, 264, 3027
AccIII	TCCGGA	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	7 cut(s)	649, 871, 1138, 1724, 1823, 2185, 2813
AcuI	CTGAAG	3 cut(s)	1251, 1506, 2805
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	6 cut(s)	242, 511, 902, 1467, 2582, 2834
AfiI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 848, 1657, 2292
AflII	CTTAAG	1 cut(s)	2567
AflIII	ACRYGT	1 cut(s)	2958
AgeI	ACCGGT	1 cut(s)	1650
AhlI	ACTAGT	2 cut(s)	512, 776
AjnI	CCWGG	3 cut(s)	66, 535, 1425
AjuI	GAANNNNNNNTTGG	2 cut(s)	2778, 2810
Alw21I	GWGCWC	4 cut(s)	630, 811, 1422, 1639
Alw26I	GTCTC	4 cut(s)	76, 974, 1268, 1995
AlwNI	CAGNNNCTG	1 cut(s)	1958
Ama87I	CYCGRG	2 cut(s)	1265, 1994
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	4 cut(s)	87, 940, 2772, 2888
ApoI	RAATTY	7 cut(s)	649, 871, 1138, 1724, 1823, 2185, 2813
ArsI	GACNNNNNNTTYG	4 cut(s)	554, 586, 766, 798
AsiGI	ACCGGT	1 cut(s)	1650
Asp700I	GAANNNNTTC	1 cut(s)	2790
AspLEI	GCGC	3 cut(s)	171, 266, 3027
AspS9I	GGNCC	3 cut(s)	583, 788, 2501
AsuC2I	CCSGG	4 cut(s)	389, 402, 1786, 2534
AsuHPI	GGTGA	9 cut(s)	280, 343, 713, 727, 1196, 1292, 1932, 2618, 2717
AsuII	TTCGAA	1 cut(s)	1974
AsuNHI	GCTAGC	1 cut(s)	1964
AvaI	CYCGRG	2 cut(s)	1265, 1994
AvaII	GGWCC	3 cut(s)	583, 788, 2501
AxyI	CCTNAGG	1 cut(s)	2693
BaeGI	GKGCMC	2 cut(s)	533, 1983
BamHI	GGATCC	5 cut(s)	372, 415, 1132, 1809, 2848
BanI	GGYRCC	2 cut(s)	1516, 1980
BanII	GRGCYC	3 cut(s)	96, 673, 1042
BarI	GAAGNNNNNNTAC	2 cut(s)	1590, 1622
Bbv12I	GWGCWC	4 cut(s)	630, 811, 1422, 1639
BbvCI	CCTCAGC	1 cut(s)	1011
BccI	CCATC	7 cut(s)	1277, 1651, 1888, 2443, 2639, 2705, 2952
BceAI	ACGGC	8 cut(s)	141, 206, 217, 427, 436, 441, 955, 1690
BciT130I	CCWGG	3 cut(s)	68, 537, 1427
BclI	TGATCA	1 cut(s)	2202
BcnI	CCSGG	4 cut(s)	389, 402, 1786, 2534
BcoDI	GTCTC	4 cut(s)	76, 974, 1268, 1995
BcuI	ACTAGT	2 cut(s)	512, 776
BfaI	CTAG	8 cut(s)	507, 513, 777, 1463, 1670, 1965, 2157, 3078
BfmI	CTRYAG	1 cut(s)	1950
BfrI	CTTAAG	1 cut(s)	2567
BfuAI	ACCTGC	1 cut(s)	1951
BglI	GCCNNNNNGGC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	7 cut(s)	68, 389, 402, 537, 1427, 1786, 2534
Bme18I	GGWCC	3 cut(s)	583, 788, 2501
BmeT110I	CYCGRG	2 cut(s)	1265, 1994
BmgT120I	GGNCC	3 cut(s)	583, 788, 2501
BmrFI	CCNGG	7 cut(s)	68, 389, 402, 537, 1427, 1786, 2534
BmrI	ACTGGG	1 cut(s)	2121
BmsI	GCATC	7 cut(s)	1232, 1468, 1739, 1747, 1779, 1908, 2914
BmtI	GCTAGC	1 cut(s)	1968
BmuI	ACTGGG	1 cut(s)	2121
BoxI	GACNNNNGTC	1 cut(s)	276
BpmI	CTGGAG	3 cut(s)	59, 1214, 2285
Bpu10I	CCTNAGC	3 cut(s)	614, 1011, 3038
Bpu14I	TTCGAA	1 cut(s)	1974
BpuEI	CTTGAG	6 cut(s)	331, 614, 1019, 1574, 2295, 2331
BpuMI	CCSGG	4 cut(s)	389, 402, 1786, 2534
BsaBI	GATNNNNATC	2 cut(s)	191, 885
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	2 cut(s)	76, 974
BsaJI	CCNNGG	9 cut(s)	222, 465, 536, 725, 1426, 1719, 1761, 2754, 2775
BsaWI	WCCGGW	3 cut(s)	54, 1650, 2968
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 493, 523, 2689, 2719
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 848, 1657, 2292
Bse118I	RCCGGY	3 cut(s)	85, 1650, 2886
Bse1I	ACTGG	4 cut(s)	2050, 2127, 2268, 2852
Bse21I	CCTNAGG	1 cut(s)	2693
Bse8I	GATNNNNATC	2 cut(s)	191, 885
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	68, 537, 1427
BseDI	CCNNGG	9 cut(s)	222, 465, 536, 725, 1426, 1719, 1761, 2754, 2775
BseGI	GGATG	9 cut(s)	493, 553, 820, 850, 1621, 1794, 1825, 2079, 2650
BseJI	GATNNNNATC	2 cut(s)	191, 885
BseLI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 848, 1657, 2292
BseMII	CTCAG	7 cut(s)	154, 1002, 1108, 1616, 2262, 2436, 2760
BseNI	ACTGG	4 cut(s)	2050, 2127, 2268, 2852
BseRI	GAGGAG	3 cut(s)	623, 947, 1515
BseSI	GKGCMC	2 cut(s)	533, 1983
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	698
Bsh1236I	CGCG	5 cut(s)	103, 169, 171, 264, 3027
Bsh1285I	CGRYCG	2 cut(s)	90, 199
BshFI	GGCC	4 cut(s)	89, 942, 2774, 2890
BshNI	GGYRCC	2 cut(s)	1516, 1980
BshTI	ACCGGT	1 cut(s)	1650
BsiEI	CGRYCG	2 cut(s)	90, 199
BsiHKAI	GWGCWC	4 cut(s)	630, 811, 1422, 1639
BsiHKCI	CYCGRG	2 cut(s)	1265, 1994
BsiWI	CGTACG	1 cut(s)	900
BslFI	GGGAC	3 cut(s)	575, 1166, 2108
BslI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 848, 1657, 2292
BsmAI	GTCTC	4 cut(s)	76, 974, 1268, 1995
BsmFI	GGGAC	3 cut(s)	575, 1166, 2108
BsmI	GAATGC	2 cut(s)	1276, 1400
BsnI	GGCC	4 cut(s)	89, 942, 2774, 2890
Bso31I	GGTCTC	2 cut(s)	76, 974
BsoBI	CYCGRG	2 cut(s)	1265, 1994
Bsp119I	TTCGAA	1 cut(s)	1974
Bsp1286I	GDGCHC	9 cut(s)	96, 533, 630, 673, 811, 1042, 1422, 1639, 1983
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	2580
Bsp19I	CCATGG	2 cut(s)	1761, 2775
Bsp68I	TCGCGA	1 cut(s)	103
BspANI	GGCC	4 cut(s)	89, 942, 2774, 2890
BspCNI	CTCAG	7 cut(s)	153, 1003, 1107, 1615, 2263, 2437, 2761
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	5 cut(s)	103, 169, 171, 264, 3027
BspHI	TCATGA	3 cut(s)	294, 1404, 1594
BspMI	ACCTGC	1 cut(s)	1951
BspOI	GCTAGC	1 cut(s)	1968
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	1974
BspT107I	GGYRCC	2 cut(s)	1516, 1980
BspTI	CTTAAG	1 cut(s)	2567
BspTNI	GGTCTC	2 cut(s)	76, 974
BsrBI	CCGCTC	2 cut(s)	477, 2309
BsrFI	RCCGGY	3 cut(s)	85, 1650, 2886
BsrGI	TGTACA	1 cut(s)	2580
BsrI	ACTGG	4 cut(s)	2050, 2127, 2268, 2852
BssAI	RCCGGY	3 cut(s)	85, 1650, 2886
BssECI	CCNNGG	9 cut(s)	222, 465, 536, 725, 1426, 1719, 1761, 2754, 2775
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	3 cut(s)	1761, 2754, 2775
Bst2UI	CCWGG	3 cut(s)	68, 537, 1427
Bst4CI	ACNGT	8 cut(s)	200, 292, 1190, 1989, 2061, 2881, 2939, 3018
Bst6I	CTCTTC	2 cut(s)	27, 2160
BstACI	GRCGYC	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	2567
BstAUI	TGTACA	1 cut(s)	2580
BstBI	TTCGAA	1 cut(s)	1974
BstC8I	GCNNGC	9 cut(s)	87, 152, 342, 839, 1121, 1549, 1635, 1966, 3044
BstDSI	CCRYGG	5 cut(s)	222, 725, 1719, 1761, 2775
BstEII	GGTNACC	1 cut(s)	1184
BstF5I	GGATG	9 cut(s)	493, 553, 820, 850, 1621, 1794, 1825, 2079, 2650
BstFNI	CGCG	5 cut(s)	103, 169, 171, 264, 3027
BstHHI	GCGC	3 cut(s)	171, 266, 3027
BstMAI	GTCTC	4 cut(s)	76, 974, 1268, 1995
BstMCI	CGRYCG	2 cut(s)	90, 199
BstNI	CCWGG	3 cut(s)	68, 537, 1427
BstNSI	RCATGY	5 cut(s)	1084, 1223, 1477, 2962, 3046
BstPAI	GACNNNNGTC	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	1184
BstSCI	CCNGG	7 cut(s)	66, 387, 400, 535, 1425, 1784, 2532
BstSFI	CTRYAG	1 cut(s)	1950
BstSLI	GKGCMC	2 cut(s)	533, 1983
BstUI	CGCG	5 cut(s)	103, 169, 171, 264, 3027
BstX2I	RGATCY	5 cut(s)	372, 415, 1132, 1809, 2848
BstYI	RGATCY	5 cut(s)	372, 415, 1132, 1809, 2848
BstZI	CGGCCG	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	2693
BsuRI	GGCC	4 cut(s)	89, 942, 2774, 2890
BtgI	CCRYGG	5 cut(s)	222, 725, 1719, 1761, 2775
BtsCI	GGATG	9 cut(s)	493, 553, 820, 850, 1621, 1794, 1825, 2079, 2650
BtsI	GCAGTG	1 cut(s)	863
BtsIMutI	CAGTG	6 cut(s)	533, 811, 863, 1102, 2043, 2680
BtuMI	TCGCGA	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	1951
Cac8I	GCNNGC	9 cut(s)	87, 152, 342, 839, 1121, 1549, 1635, 1966, 3044
CaiI	CAGNNNCTG	1 cut(s)	1958
CciI	TCATGA	3 cut(s)	294, 1404, 1594
CfoI	GCGC	3 cut(s)	171, 266, 3027
Cfr10I	RCCGGY	3 cut(s)	85, 1650, 2886
Cfr13I	GGNCC	3 cut(s)	583, 788, 2501
CseI	GACGC	4 cut(s)	270, 417, 426, 2789
Csp6I	GTAC	6 cut(s)	241, 510, 901, 1466, 2581, 2833
CspAI	ACCGGT	1 cut(s)	1650
CviQI	GTAC	6 cut(s)	241, 510, 901, 1466, 2581, 2833
DraI	TTTAAA	1 cut(s)	1693
DrdI	GACNNNNNNGTC	1 cut(s)	2891
DseDI	GACNNNNNNGTC	1 cut(s)	2891
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	27, 2160
EarI	CTCTTC	2 cut(s)	27, 2160
EciI	GGCGGA	3 cut(s)	146, 332, 2540
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	1761, 2754, 2775
Eco24I	GRGCYC	3 cut(s)	96, 673, 1042
Eco31I	GGTCTC	2 cut(s)	76, 974
Eco47I	GGWCC	3 cut(s)	583, 788, 2501
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	1251, 1506, 2805
Eco81I	CCTNAGG	1 cut(s)	2693
Eco88I	CYCGRG	2 cut(s)	1265, 1994
Eco91I	GGTNACC	1 cut(s)	1184
EcoO109I	RGGNCCY	2 cut(s)	788, 2501
EcoO65I	GGTNACC	1 cut(s)	1184
EcoRI	GAATTC	1 cut(s)	2813
EcoRII	CCWGG	3 cut(s)	66, 535, 1425
EcoT14I	CCWWGG	3 cut(s)	1761, 2754, 2775
EcoT22I	ATGCAT	1 cut(s)	1225
EcoT38I	GRGCYC	3 cut(s)	96, 673, 1042
ErhI	CCWWGG	3 cut(s)	1761, 2754, 2775
FalI	AAGNNNNNCTT	4 cut(s)	1479, 1511, 2778, 2810
FaqI	GGGAC	3 cut(s)	575, 1166, 2108
FauI	CCCGC	3 cut(s)	2314, 2339, 3020
FbaI	TGATCA	1 cut(s)	2202
FblI	GTMKAC	5 cut(s)	5, 111, 2031, 2302, 2883
FokI	GGATG	9 cut(s)	500, 560, 807, 857, 1628, 1801, 1832, 2066, 2657
FriOI	GRGCYC	3 cut(s)	96, 673, 1042
FspBI	CTAG	8 cut(s)	507, 513, 777, 1463, 1670, 1965, 2157, 3078
GlaI	GCGC	3 cut(s)	170, 265, 3026
GsaI	CCCAGC	1 cut(s)	702
GsuI	CTGGAG	3 cut(s)	59, 1214, 2285
HaeIII	GGCC	4 cut(s)	89, 942, 2774, 2890
HgaI	GACGC	4 cut(s)	270, 417, 426, 2789
HhaI	GCGC	3 cut(s)	171, 266, 3027
Hin1I	GRCGYC	1 cut(s)	428
Hin6I	GCGC	3 cut(s)	169, 264, 3025
HinP1I	GCGC	3 cut(s)	169, 264, 3025
HincII	GTYRAC	2 cut(s)	6, 1710
HindII	GTYRAC	2 cut(s)	6, 1710
HindIII	AAGCTT	1 cut(s)	350
HphI	GGTGA	9 cut(s)	280, 343, 713, 727, 1196, 1292, 1932, 2618, 2717
Hpy99I	CGWCG	4 cut(s)	264, 275, 427, 442
HpyAV	CCTTC	9 cut(s)	589, 1356, 1432, 1530, 1970, 2709, 2839, 2874, 2977
HpyCH4III	ACNGT	8 cut(s)	200, 292, 1190, 1989, 2061, 2881, 2939, 3018
HpyCH4V	TGCA	7 cut(s)	977, 1070, 1223, 1477, 1730, 2491, 3046
Hsp92I	GRCGYC	1 cut(s)	428
HspAI	GCGC	3 cut(s)	169, 264, 3025
Kpn2I	TCCGGA	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	2202
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	6 cut(s)	82, 226, 474, 610, 2296, 2434
LweI	GCATC	7 cut(s)	1232, 1468, 1739, 1747, 1779, 1908, 2914
MaeI	CTAG	8 cut(s)	507, 513, 777, 1463, 1670, 1965, 2157, 3078
MaeIII	GTNAC	4 cut(s)	254, 1184, 1237, 2084
MbiI	CCGCTC	2 cut(s)	477, 2309
MfeI	CAATTG	2 cut(s)	1529, 2561
MflI	RGATCY	5 cut(s)	372, 415, 1132, 1809, 2848
MhlI	GDGCHC	9 cut(s)	96, 533, 630, 673, 811, 1042, 1422, 1639, 1983
MlyI	GAGTC	5 cut(s)	114, 191, 335, 557, 718
MmeI	TCCRAC	2 cut(s)	260, 1797
Mph1103I	ATGCAT	1 cut(s)	1225
MroI	TCCGGA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	2790
MslI	CAYNNNNRTG	4 cut(s)	293, 804, 2136, 2840
MspA1I	CMGCKG	2 cut(s)	1955, 2630
MspCI	CTTAAG	1 cut(s)	2567
MspR9I	CCNGG	7 cut(s)	68, 389, 402, 537, 1427, 1786, 2534
MunI	CAATTG	2 cut(s)	1529, 2561
Mva1269I	GAATGC	2 cut(s)	1276, 1400
MvaI	CCWGG	3 cut(s)	68, 537, 1427
MvnI	CGCG	5 cut(s)	103, 169, 171, 264, 3027
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	4 cut(s)	389, 402, 1786, 2534
NcoI	CCATGG	2 cut(s)	1761, 2775
NgoMIV	GCCGGC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	1964
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	1184, 2084
NruI	TCGCGA	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	1225
NspI	RCATGY	5 cut(s)	1084, 1223, 1477, 2962, 3046
NspV	TTCGAA	1 cut(s)	1974
PaeI	GCATGC	1 cut(s)	3046
PaeR7I	CTCGAG	1 cut(s)	1994
PagI	TCATGA	3 cut(s)	294, 1404, 1594
PaqCI	CACCTGC	1 cut(s)	1951
PciI	ACATGT	1 cut(s)	2958
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	419, 3017
PctI	GAATGC	2 cut(s)	1276, 1400
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	2790
PfeI	GAWTC	7 cut(s)	60, 136, 718, 733, 2011, 2245, 2874
Pfl23II	CGTACG	1 cut(s)	900
PflFI	GACNNNGTC	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	1784
PinAI	ACCGGT	1 cut(s)	1650
PleI	GAGTC	5 cut(s)	113, 190, 334, 557, 717
PpsI	GAGTC	5 cut(s)	113, 190, 334, 557, 717
PpuMI	RGGWCCY	2 cut(s)	788, 2501
PscI	ACATGT	1 cut(s)	2958
PshAI	GACNNNNGTC	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	1841
Psp5II	RGGWCCY	2 cut(s)	788, 2501
Psp6I	CCWGG	3 cut(s)	66, 535, 1425
PspEI	GGTNACC	1 cut(s)	1184
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	3 cut(s)	66, 535, 1425
PspLI	CGTACG	1 cut(s)	900
PspPI	GGNCC	3 cut(s)	583, 788, 2501
PspPPI	RGGWCCY	2 cut(s)	788, 2501
PstNI	CAGNNNCTG	1 cut(s)	1958
PsuI	RGATCY	5 cut(s)	372, 415, 1132, 1809, 2848
PsyI	GACNNNGTC	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	1955, 2630
RruI	TCGCGA	1 cut(s)	103
RsaI	GTAC	6 cut(s)	242, 511, 902, 1467, 2582, 2834
RsaNI	GTAC	6 cut(s)	241, 510, 901, 1466, 2581, 2833
RseI	CAYNNNNRTG	4 cut(s)	293, 804, 2136, 2840
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	583, 788, 2501
ScaI	AGTACT	1 cut(s)	511
SchI	GAGTC	5 cut(s)	114, 191, 335, 557, 718
ScrFI	CCNGG	7 cut(s)	68, 389, 402, 537, 1427, 1786, 2534
SduI	GDGCHC	9 cut(s)	96, 533, 630, 673, 811, 1042, 1422, 1639, 1983
SfaNI	GCATC	7 cut(s)	1232, 1468, 1739, 1747, 1779, 1908, 2914
SfcI	CTRYAG	1 cut(s)	1950
Sfr274I	CTCGAG	1 cut(s)	1994
SfuI	TTCGAA	1 cut(s)	1974
SinI	GGWCC	3 cut(s)	583, 788, 2501
SlaI	CTCGAG	1 cut(s)	1994
SmiMI	CAYNNNNRTG	4 cut(s)	293, 804, 2136, 2840
SmlI	CTYRAG	8 cut(s)	310, 629, 998, 1553, 1994, 2310, 2346, 2567
SmoI	CTYRAG	8 cut(s)	310, 629, 998, 1553, 1994, 2310, 2346, 2567
SpeI	ACTAGT	2 cut(s)	512, 776
SphI	GCATGC	1 cut(s)	3046
SspI	AATATT	3 cut(s)	1537, 2092, 2356
SspMI	CTAG	8 cut(s)	507, 513, 777, 1463, 1670, 1965, 2157, 3078
StyD4I	CCNGG	7 cut(s)	66, 387, 400, 535, 1425, 1784, 2532
StyI	CCWWGG	3 cut(s)	1761, 2754, 2775
TaaI	ACNGT	8 cut(s)	200, 292, 1190, 1989, 2061, 2881, 2939, 3018
TatI	WGTACW	4 cut(s)	509, 1465, 2580, 2832
TauI	GCSGC	5 cut(s)	131, 221, 232, 480, 1368
TfiI	GAWTC	7 cut(s)	60, 136, 718, 733, 2011, 2245, 2874
TscAI	CASTG	6 cut(s)	533, 811, 863, 1102, 2050, 2680
TseFI	GTSAC	2 cut(s)	1184, 2084
Tsp45I	GTSAC	2 cut(s)	1184, 2084
TspGWI	ACGGA	5 cut(s)	95, 1628, 2072, 2429, 2627
TspRI	CASTG	6 cut(s)	533, 811, 863, 1102, 2050, 2680
Tth111I	GACNNNGTC	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	2567
VpaK11BI	GGWCC	3 cut(s)	583, 788, 2501
XapI	RAATTY	7 cut(s)	649, 871, 1138, 1724, 1823, 2185, 2813
XceI	RCATGY	5 cut(s)	1084, 1223, 1477, 2962, 3046
XhoI	CTCGAG	1 cut(s)	1994
XmiI	GTMKAC	5 cut(s)	5, 111, 2031, 2302, 2883
XmnI	GAANNNNTTC	1 cut(s)	2790
XspI	CTAG	8 cut(s)	507, 513, 777, 1463, 1670, 1965, 2157, 3078
ZrmI	AGTACT	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	1225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.