Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Forward (+)

36002065 .. 36008934

Gene Structure 6870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47550.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGGCGACCCCAAAACCCCAGAGGTCTAAGGAGGAGGTGGAGGACATAATCCTCCGCAAAATCTTCCAGGTCACGCTGACGGAGCCACCGCCGGATCCCAACTCCCGAGTCGTCTACTTGGAGATGACGGCAGCGGAGCTTCTCAGCGAGAACAAGCCGATGAGGCTCACGCGCGACCTCTTGGAGTCGATCCTTATCGACCGCCTCATGGGCGGCGGTGGCGGCGCCGCGGCGGCGGAGCCACCGTTCCAGTATCTCGTCGGGTGTTACCGACGCGCCTACGAGGAGAGTAGGAAGATCACCGCCATGAAAGATAAGAACTTGAGGTCGGATATGGAGTCTGTGATTAGACAAGCGAAGAAGCTTTCTGTTTCGTATTGTAGGATCCATTTGGGTAACCCGGAGTCGTTTCCGGGTTCGGGTTCGGATCCGGGTACGGCGTCGCCTTTACTGCCGTTGATTTTCAGTGAAGTGGGAGGCACAATGGATGAGTTTGGAGGGAGTAGTAGTAGTGGGGTGCAATGCCCACCTGGGTTTTTGGATGAGTTCTTTAGGGACTCGGATTTCGATAGCTTGGACCCGATTTTGAGGGGATTGTATGAGGAGTTGAGGGAGATTGTGCTTAAGGTTTCGGCATTGGGGAATTTCCAGCAGCCATTGAGGGCCTTGTTGTATTTGGTTAGCTTTCCGGTGGGGGCAAAGAGTTTGGTGAATCACCCTTGGTGGATTCCGAAAGGGGTTTACTTGAATGGGAGGGTTATAGAGAGGACTAGTATTTTGGGTCCTTTTTTTCATGTTAGTGCATTGCCTGATACTCCAATTTTCAAGAGCCAGCCTGATGTGGGGCAGCAGTGCTTTCCAGAAAATTCAAGTGATAGTGGTCTGCGATCTTCATACAGCACGATTAAGACAATGATGAATAATTTATATGCCGGCCTCCATGAACTTCTCCACACACTTTTAAAAAATCCAGAAACTCGTGAGAGTGTTCTTGAGTATCTTGCTGAGGTTATCAACAAGAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTTACTCTCAGTGCTGTTATGCTTCGACTTTGTGAGCCATTTCTGGATGCAAATTCAAGTAAAAGGGACAAAATCGATCCGAAATATGTATTCTATGGTAACCGTCTAGAGTTAAGAGGTTTGACTGCCCTACATGCATCATCTGAAGAAGTTACGGAATGGATTAATGAAGATAGGCTGGGGAATGCTGGTGGTGATGGTCAAAATCGACTTTCACAATCCCAACAAGCCACCAGTTCTGGCAGTAACATATCTCAACCTTCTAACCTGAAGCCGACCGGTGAAAAAATTAAATATACATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTACTCAATCTGGGTTTATTGAAAGCATTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGAATGAAGATACACTTAAAGCCTTGAAAAAGCAGGCACCTTCTCCTGGAATGAATAATGATATAGCTCGCCTTGAGAAAGAGATAGAGTTGTGTAAACAAGAAAAGCGTTGTTATGAAGCTCAGATACTAACGGATGAACCACTCTTAGAGCGTGCTCTTTCTTTCTACCGGTTGATGGTGGTATGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTCTGCCATCATCTTGCCCTGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTTGCTTCGCGGATGCCAAAAGCATTTCAAGGGATCTTATTGGATGAATTTATGAACTTCATTATAATGTTCATGGCAAGTCCAGAATATATCAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAACTGCTTGATGCCCCGTCCAAGTCATCAACCAGCTTCTGTTACAGCTGCTGCTGCTAGCCTGTTCGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTCGACATTGAGTTCACTGGTTCTCATACACAGTTTTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTTCTCGAATATCTTTGGCAAGTCCCCAGTCATCGAAATGCTTGGAAACAGATTGCTAGGGAAGAGGAGAAAGGCGTATATTTGAATTTCTTGAACTTCTTGATCAATGATAGTATATATCTTCTGGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCGAATACTGCAGAATGGGAGAGTAGACCTGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCAATCTCAAGAAAATATCATCCGAATTGATATGAAGTTGGCAAATGAAGATGTGAGCATGTTGGCATTTACTACAGAACAAATTACAGCTCCTTTCCTACTTGCTGAGATGGTCGAAAGGGTGGCAAGCATGCTCAATTACTTTTTGTTGCAATTAGTAGGTCCTCAAAGAAAATCTCTTAGCCTAAAAGACCCGGAAAAGTATGAATTCCGTCCAAAGCAATTGCTTAAGCAGATTGTGTACATCTATGTTCATCTAGCAAGAGGCGATACAGAAAATATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTTGGTGCTGCTGCGGATGTCCTAAGAAGAATCGGTGAAGATGGGAGGGTCATACAGGAGTTTGTGGAGCTTGGTGCCAAAGCCAAGGTTTCTGCTTCTGAGGCCATGGACGCTGAAGCTGTTCTAGGGGATATTCCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACTGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCTGATAATGAATTGAAGGCAAAAATACAAGAGTTCATTAGGTCACAGGAGTCTAAGCGTGGGGAAAGCCTAGGCATGCAGAGTGACAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1032

Amino Acids

116.62

Weight (kDa)

5.44

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	260 - 818	5.8e-161	Ubiquitin elongating factor core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1838
AasI	GACNNNNNNGTC	1 cut(s)	2888
Acc36I	ACCTGC	1 cut(s)	2311
AccB1I	GGYRCC	4 cut(s)	224, 1513, 1977, 2741
AccI	GTMKAC	4 cut(s)	114, 2028, 2299, 2880
AccII	CGCG	5 cut(s)	172, 174, 230, 276, 1783
AcsI	RAATTY	8 cut(s)	643, 865, 1132, 1721, 1820, 2182, 2543, 2810
AcuI	CTGAAG	3 cut(s)	1245, 1370, 2802
AcyI	GRCGYC	2 cut(s)	225, 440
AfaI	GTAC	5 cut(s)	436, 1416, 1464, 2579, 2831
AfiI	CCNNNNNNNGG	5 cut(s)	208, 419, 842, 1523, 1654
AflII	CTTAAG	2 cut(s)	623, 2564
AflIII	ACRYGT	1 cut(s)	2955
AgeI	ACCGGT	2 cut(s)	1358, 1647
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	3 cut(s)	66, 529, 1522
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
Alw21I	GWGCWC	1 cut(s)	1636
Alw26I	GTCTC	1 cut(s)	1992
AlwNI	CAGNNNCTG	2 cut(s)	1943, 1955
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	4 cut(s)	663, 934, 2769, 2885
ApeKI	GCWGC	9 cut(s)	131, 652, 847, 1952, 1955, 1958, 2627, 2675, 2678
ApoI	RAATTY	8 cut(s)	643, 865, 1132, 1721, 1820, 2182, 2543, 2810
ArsI	GACNNNNNNTTYG	4 cut(s)	548, 580, 760, 792
AseI	ATTAAT	1 cut(s)	1245
AsiGI	ACCGGT	2 cut(s)	1358, 1647
Asp700I	GAANNNNTTC	1 cut(s)	2787
AspA2I	CCTAGG	1 cut(s)	3034
AspLEI	GCGC	3 cut(s)	174, 227, 278
AspS9I	GGNCC	4 cut(s)	577, 663, 782, 2498
AsuC2I	CCSGG	4 cut(s)	401, 414, 432, 2531
AsuHPI	GGTGA	6 cut(s)	292, 707, 721, 1286, 1373, 2714
AsuII	TTCGAA	1 cut(s)	1971
AsuNHI	GCTAGC	1 cut(s)	1961
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	3 cut(s)	577, 782, 2498
AvrII	CCTAGG	1 cut(s)	3034
BaeGI	GKGCMC	1 cut(s)	1980
BamHI	GGATCC	4 cut(s)	94, 384, 427, 2845
BanI	GGYRCC	4 cut(s)	224, 1513, 1977, 2741
BanII	GRGCYC	1 cut(s)	1036
BarI	GAAGNNNNNNTAC	2 cut(s)	1587, 1619
BauI	CACGAG	1 cut(s)	978
Bbv12I	GWGCWC	1 cut(s)	1636
BbvCI	CCTCAGC	1 cut(s)	1005
BbvI	GCAGC	9 cut(s)	143, 664, 859, 1939, 1942, 1945, 2614, 2662, 2665
BccI	CCATC	9 cut(s)	1271, 1648, 1711, 1885, 2440, 2636, 2639, 2702, 2949
BceAI	ACGGC	3 cut(s)	144, 439, 453
BciT130I	CCWGG	3 cut(s)	68, 531, 1524
BclI	TGATCA	1 cut(s)	2199
BcnI	CCSGG	4 cut(s)	401, 414, 432, 2531
BcoDI	GTCTC	1 cut(s)	1992
BcuI	ACTAGT	1 cut(s)	770
BfmI	CTRYAG	3 cut(s)	2283, 2409, 2877
BfoI	RGCGCY	1 cut(s)	228
BfrI	CTTAAG	2 cut(s)	623, 2564
BfuAI	ACCTGC	1 cut(s)	2311
BglI	GCCNNNNNGGC	3 cut(s)	163, 210, 233
BlnI	CCTAGG	1 cut(s)	3034
Bme1390I	CCNGG	7 cut(s)	68, 401, 414, 432, 531, 1524, 2531
Bme18I	GGWCC	3 cut(s)	577, 782, 2498
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	4 cut(s)	577, 663, 782, 2498
BmrFI	CCNGG	7 cut(s)	68, 401, 414, 432, 531, 1524, 2531
BmrI	ACTGGG	1 cut(s)	2118
BmsI	GCATC	8 cut(s)	1117, 1226, 1465, 1736, 1744, 1776, 1905, 2911
BmtI	GCTAGC	1 cut(s)	1965
BmuI	ACTGGG	1 cut(s)	2118
BpmI	CTGGAG	1 cut(s)	2282
Bpu10I	CCTNAGC	1 cut(s)	1005
Bpu14I	TTCGAA	1 cut(s)	1971
BpuEI	CTTGAG	6 cut(s)	343, 1013, 1571, 2012, 2292, 2328
BpuMI	CCSGG	4 cut(s)	401, 414, 432, 2531
Bsa29I	ATCGAT	1 cut(s)	1155
BsaBI	GATNNNNATC	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	225, 440
BsaJI	CCNNGG	7 cut(s)	228, 530, 719, 1758, 2751, 2772, 3034
BsaWI	WCCGGW	3 cut(s)	688, 1358, 1647
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 493, 523
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 419, 842, 1523, 1654
Bse118I	RCCGGY	4 cut(s)	932, 1358, 1647, 2883
Bse1I	ACTGG	6 cut(s)	250, 1314, 2047, 2124, 2265, 2849
Bse3DI	GCAATG	2 cut(s)	527, 803
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	68, 531, 1524
BseCI	ATCGAT	1 cut(s)	1155
BseDI	CCNNGG	7 cut(s)	228, 530, 719, 1758, 2751, 2772, 3034
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	5 cut(s)	208, 419, 842, 1523, 1654
BseMI	GCAATG	2 cut(s)	527, 803
BseMII	CTCAG	7 cut(s)	157, 996, 1102, 1613, 2259, 2433, 2757
BseNI	ACTGG	6 cut(s)	250, 1314, 2047, 2124, 2265, 2849
BseRI	GAGGAG	4 cut(s)	47, 299, 617, 2177
BseSI	GKGCMC	1 cut(s)	1980
BseXI	GCAGC	9 cut(s)	143, 664, 859, 1939, 1942, 1945, 2614, 2662, 2665
BseYI	CCCAGC	2 cut(s)	1258, 2623
Bsh1236I	CGCG	5 cut(s)	172, 174, 230, 276, 1783
Bsh1285I	CGRYCG	2 cut(s)	202, 1359
BshFI	GGCC	4 cut(s)	665, 936, 2771, 2887
BshNI	GGYRCC	4 cut(s)	224, 1513, 1977, 2741
BshTI	ACCGGT	2 cut(s)	1358, 1647
BshVI	ATCGAT	1 cut(s)	1155
BsiEI	CGRYCG	2 cut(s)	202, 1359
BsiHKAI	GWGCWC	1 cut(s)	1636
BsiHKCI	CYCGRG	1 cut(s)	105
BslFI	GGGAC	3 cut(s)	569, 1160, 2105
BslI	CCNNNNNNNGG	5 cut(s)	208, 419, 842, 1523, 1654
BsmAI	GTCTC	1 cut(s)	1992
BsmFI	GGGAC	3 cut(s)	569, 1160, 2105
BsmI	GAATGC	2 cut(s)	1270, 1397
BsnI	GGCC	4 cut(s)	665, 936, 2771, 2887
BsoBI	CYCGRG	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	1971
Bsp1286I	GDGCHC	3 cut(s)	1036, 1636, 1980
Bsp1407I	TGTACA	1 cut(s)	2577
Bsp19I	CCATGG	2 cut(s)	1758, 2772
BspANI	GGCC	4 cut(s)	665, 936, 2771, 2887
BspCNI	CTCAG	7 cut(s)	156, 997, 1101, 1612, 2260, 2434, 2758
BspDI	ATCGAT	1 cut(s)	1155
BspFNI	CGCG	5 cut(s)	172, 174, 230, 276, 1783
BspHI	TCATGA	1 cut(s)	1401
BspMAI	CTGCAG	1 cut(s)	2287
BspMI	ACCTGC	1 cut(s)	2311
BspOI	GCTAGC	1 cut(s)	1965
BspT104I	TTCGAA	1 cut(s)	1971
BspT107I	GGYRCC	4 cut(s)	224, 1513, 1977, 2741
BspTI	CTTAAG	2 cut(s)	623, 2564
BsrDI	GCAATG	2 cut(s)	527, 803
BsrFI	RCCGGY	4 cut(s)	932, 1358, 1647, 2883
BsrGI	TGTACA	1 cut(s)	2577
BsrI	ACTGG	6 cut(s)	250, 1314, 2047, 2124, 2265, 2849
BssAI	RCCGGY	4 cut(s)	932, 1358, 1647, 2883
BssECI	CCNNGG	7 cut(s)	228, 530, 719, 1758, 2751, 2772, 3034
BssNI	GRCGYC	2 cut(s)	225, 440
BssSI	CACGAG	1 cut(s)	978
BssT1I	CCWWGG	5 cut(s)	719, 1758, 2751, 2772, 3034
Bst2BI	CACGAG	1 cut(s)	978
Bst2UI	CCWGG	3 cut(s)	68, 531, 1524
Bst4CI	ACNGT	6 cut(s)	246, 1184, 1986, 2058, 2878, 2936
Bst6I	CTCTTC	1 cut(s)	2154
BstACI	GRCGYC	2 cut(s)	225, 440
BstAFI	CTTAAG	2 cut(s)	623, 2564
BstAUI	TGTACA	1 cut(s)	2577
BstBI	TTCGAA	1 cut(s)	1971
BstC8I	GCNNGC	9 cut(s)	833, 934, 1512, 1546, 1632, 1963, 2464, 2468, 3041
BstDSI	CCRYGG	3 cut(s)	228, 1758, 2772
BstEII	GGTNACC	2 cut(s)	395, 1178
BstFNI	CGCG	5 cut(s)	172, 174, 230, 276, 1783
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	3 cut(s)	174, 227, 278
BstMAI	GTCTC	1 cut(s)	1992
BstMCI	CGRYCG	2 cut(s)	202, 1359
BstNI	CCWGG	3 cut(s)	68, 531, 1524
BstNSI	RCATGY	7 cut(s)	1078, 1217, 1474, 2398, 2470, 2959, 3043
BstPI	GGTNACC	2 cut(s)	395, 1178
BstSCI	CCNGG	7 cut(s)	66, 399, 412, 430, 529, 1522, 2529
BstSFI	CTRYAG	3 cut(s)	2283, 2409, 2877
BstSLI	GKGCMC	1 cut(s)	1980
BstUI	CGCG	5 cut(s)	172, 174, 230, 276, 1783
BstV1I	GCAGC	9 cut(s)	143, 664, 859, 1939, 1942, 1945, 2614, 2662, 2665
BstX2I	RGATCY	5 cut(s)	94, 384, 427, 1806, 2845
BstYI	RGATCY	5 cut(s)	94, 384, 427, 1806, 2845
Bsu15I	ATCGAT	1 cut(s)	1155
BsuRI	GGCC	4 cut(s)	665, 936, 2771, 2887
BsuTUI	ATCGAT	1 cut(s)	1155
BtgI	CCRYGG	3 cut(s)	228, 1758, 2772
BtsI	GCAGTG	1 cut(s)	857
BtsIMutI	CAGTG	5 cut(s)	472, 857, 1096, 2040, 2874
BveI	ACCTGC	1 cut(s)	2311
Cac8I	GCNNGC	9 cut(s)	833, 934, 1512, 1546, 1632, 1963, 2464, 2468, 3041
CaiI	CAGNNNCTG	2 cut(s)	1943, 1955
CciI	TCATGA	1 cut(s)	1401
CfoI	GCGC	3 cut(s)	174, 227, 278
Cfr10I	RCCGGY	4 cut(s)	932, 1358, 1647, 2883
Cfr13I	GGNCC	4 cut(s)	577, 663, 782, 2498
Cfr42I	CCGCGG	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	1155
CseI	GACGC	3 cut(s)	282, 429, 2786
Csp6I	GTAC	5 cut(s)	435, 1415, 1463, 2578, 2830
CspAI	ACCGGT	2 cut(s)	1358, 1647
CviQI	GTAC	5 cut(s)	435, 1415, 1463, 2578, 2830
DinI	GGCGCC	1 cut(s)	226
DraI	TTTAAA	2 cut(s)	963, 1690
DrdI	GACNNNNNNGTC	1 cut(s)	2888
DseDI	GACNNNNNNGTC	1 cut(s)	2888
Eam1104I	CTCTTC	1 cut(s)	2154
EarI	CTCTTC	1 cut(s)	2154
EciI	GGCGGA	2 cut(s)	251, 2069
Eco130I	CCWWGG	5 cut(s)	719, 1758, 2751, 2772, 3034
Eco24I	GRGCYC	1 cut(s)	1036
Eco47I	GGWCC	3 cut(s)	577, 782, 2498
Eco57I	CTGAAG	3 cut(s)	1245, 1370, 2802
Eco88I	CYCGRG	1 cut(s)	105
Eco91I	GGTNACC	2 cut(s)	395, 1178
EcoO109I	RGGNCCY	3 cut(s)	663, 782, 2498
EcoO65I	GGTNACC	2 cut(s)	395, 1178
EcoRI	GAATTC	2 cut(s)	2543, 2810
EcoRII	CCWGG	3 cut(s)	66, 529, 1522
EcoT14I	CCWWGG	5 cut(s)	719, 1758, 2751, 2772, 3034
EcoT22I	ATGCAT	1 cut(s)	1219
EcoT38I	GRGCYC	1 cut(s)	1036
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	5 cut(s)	719, 1758, 2751, 2772, 3034
FalI	AAGNNNNNCTT	2 cut(s)	1476, 1508
FaqI	GGGAC	3 cut(s)	569, 1160, 2105
FauI	CCCGC	1 cut(s)	2336
FbaI	TGATCA	1 cut(s)	2199
FblI	GTMKAC	4 cut(s)	114, 2028, 2299, 2880
FriOI	GRGCYC	1 cut(s)	1036
GlaI	GCGC	3 cut(s)	173, 226, 277
GsaI	CCCAGC	2 cut(s)	1262, 2627
GsuI	CTGGAG	1 cut(s)	2282
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	665, 936, 2771, 2887
HgaI	GACGC	3 cut(s)	282, 429, 2786
HhaI	GCGC	3 cut(s)	174, 227, 278
Hin1I	GRCGYC	2 cut(s)	225, 440
Hin6I	GCGC	3 cut(s)	172, 225, 276
HinP1I	GCGC	3 cut(s)	172, 225, 276
HincII	GTYRAC	1 cut(s)	2029
HindII	GTYRAC	1 cut(s)	2029
HindIII	AAGCTT	1 cut(s)	362
HphI	GGTGA	6 cut(s)	292, 707, 721, 1286, 1373, 2714
Hpy166II	GTNNAC	9 cut(s)	115, 742, 1574, 2029, 2040, 2300, 2578, 2832, 2881
Hpy8I	GTNNAC	9 cut(s)	115, 742, 1574, 2029, 2040, 2300, 2578, 2832, 2881
Hpy99I	CGWCG	3 cut(s)	263, 276, 445
HpyAV	CCTTC	6 cut(s)	1350, 1527, 1967, 2836, 2871, 2974
HpyCH4III	ACNGT	6 cut(s)	246, 1184, 1986, 2058, 2878, 2936
Hsp92I	GRCGYC	2 cut(s)	225, 440
HspAI	GCGC	3 cut(s)	172, 225, 276
KasI	GGCGCC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	932
KroNI	GCCGGC	1 cut(s)	934
Ksp22I	TGATCA	1 cut(s)	2199
KspI	CCGCGG	1 cut(s)	231
LmnI	GCTCC	5 cut(s)	82, 136, 238, 2431, 2734
Lsp1109I	GCAGC	9 cut(s)	143, 664, 859, 1939, 1942, 1945, 2614, 2662, 2665
LweI	GCATC	8 cut(s)	1117, 1226, 1465, 1736, 1744, 1776, 1905, 2911
MfeI	CAATTG	1 cut(s)	2558
MflI	RGATCY	5 cut(s)	94, 384, 427, 1806, 2845
MhlI	GDGCHC	3 cut(s)	1036, 1636, 1980
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	6 cut(s)	117, 194, 347, 413, 551, 3023
MmeI	TCCRAC	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	1219
MroNI	GCCGGC	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	2787
MslI	CAYNNNNRTG	5 cut(s)	305, 798, 1838, 2133, 2837
MspA1I	CMGCKG	4 cut(s)	134, 230, 1952, 2627
MspCI	CTTAAG	2 cut(s)	623, 2564
MspR9I	CCNGG	7 cut(s)	68, 401, 414, 432, 531, 1524, 2531
MunI	CAATTG	1 cut(s)	2558
Mva1269I	GAATGC	2 cut(s)	1270, 1397
MvaI	CCWGG	3 cut(s)	68, 531, 1524
MvnI	CGCG	5 cut(s)	172, 174, 230, 276, 1783
NaeI	GCCGGC	1 cut(s)	934
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	4 cut(s)	401, 414, 432, 2531
NcoI	CCATGG	2 cut(s)	1758, 2772
NgoMIV	GCCGGC	1 cut(s)	932
NheI	GCTAGC	1 cut(s)	1961
NmuCI	GTSAC	3 cut(s)	70, 3006, 3047
NsiI	ATGCAT	1 cut(s)	1219
NspI	RCATGY	7 cut(s)	1078, 1217, 1474, 2398, 2470, 2959, 3043
NspV	TTCGAA	1 cut(s)	1971
PaeI	GCATGC	2 cut(s)	2470, 3043
PagI	TCATGA	1 cut(s)	1401
PciI	ACATGT	1 cut(s)	2955
PctI	GAATGC	2 cut(s)	1270, 1397
PdiI	GCCGGC	1 cut(s)	934
PdmI	GAANNNNTTC	1 cut(s)	2787
PfeI	GAWTC	6 cut(s)	712, 727, 2008, 2242, 2697, 2871
PfoI	TCCNGGA	1 cut(s)	1522
PinAI	ACCGGT	2 cut(s)	1358, 1647
PleI	GAGTC	6 cut(s)	116, 193, 346, 412, 551, 3022
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	6 cut(s)	116, 193, 346, 412, 551, 3022
PpuMI	RGGWCCY	2 cut(s)	782, 2498
PscI	ACATGT	1 cut(s)	2955
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	1 cut(s)	1838
Psp5II	RGGWCCY	2 cut(s)	782, 2498
Psp6I	CCWGG	3 cut(s)	66, 529, 1522
PspEI	GGTNACC	2 cut(s)	395, 1178
PspFI	CCCAGC	2 cut(s)	1258, 2623
PspGI	CCWGG	3 cut(s)	66, 529, 1522
PspPI	GGNCC	4 cut(s)	577, 663, 782, 2498
PspPPI	RGGWCCY	2 cut(s)	782, 2498
PsrI	GAACNNNNNNTAC	2 cut(s)	1653, 1685
PstI	CTGCAG	1 cut(s)	2287
PstNI	CAGNNNCTG	2 cut(s)	1943, 1955
PsuI	RGATCY	5 cut(s)	94, 384, 427, 1806, 2845
PvuII	CAGCTG	2 cut(s)	1952, 2627
RsaI	GTAC	5 cut(s)	436, 1416, 1464, 2579, 2831
RsaNI	GTAC	5 cut(s)	435, 1415, 1463, 2578, 2830
RseI	CAYNNNNRTG	5 cut(s)	305, 798, 1838, 2133, 2837
SacII	CCGCGG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	2027
Sau96I	GGNCC	4 cut(s)	577, 663, 782, 2498
SchI	GAGTC	6 cut(s)	117, 194, 347, 413, 551, 3023
ScrFI	CCNGG	7 cut(s)	68, 401, 414, 432, 531, 1524, 2531
SduI	GDGCHC	3 cut(s)	1036, 1636, 1980
SfaNI	GCATC	8 cut(s)	1117, 1226, 1465, 1736, 1744, 1776, 1905, 2911
SfcI	CTRYAG	3 cut(s)	2283, 2409, 2877
SfoI	GGCGCC	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1971
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	3 cut(s)	577, 782, 2498
SmiMI	CAYNNNNRTG	5 cut(s)	305, 798, 1838, 2133, 2837
SmlI	CTYRAG	8 cut(s)	322, 623, 992, 1550, 1991, 2307, 2343, 2564
SmoI	CTYRAG	8 cut(s)	322, 623, 992, 1550, 1991, 2307, 2343, 2564
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	2 cut(s)	2470, 3043
SspDI	GGCGCC	1 cut(s)	224
SspI	AATATT	1 cut(s)	2089
StyD4I	CCNGG	7 cut(s)	66, 399, 412, 430, 529, 1522, 2529
StyI	CCWWGG	5 cut(s)	719, 1758, 2751, 2772, 3034
TaaI	ACNGT	6 cut(s)	246, 1184, 1986, 2058, 2878, 2936
TatI	WGTACW	3 cut(s)	1462, 2577, 2829
TauI	GCSGC	5 cut(s)	216, 225, 230, 233, 236
TfiI	GAWTC	6 cut(s)	712, 727, 2008, 2242, 2697, 2871
TscAI	CASTG	5 cut(s)	472, 857, 1096, 2047, 2881
TseFI	GTSAC	3 cut(s)	70, 3006, 3047
TseI	GCWGC	9 cut(s)	131, 652, 847, 1952, 1955, 1958, 2627, 2675, 2678
Tsp45I	GTSAC	3 cut(s)	70, 3006, 3047
TspGWI	ACGGA	4 cut(s)	95, 1250, 1625, 2537
TspRI	CASTG	5 cut(s)	472, 857, 1096, 2047, 2881
Vha464I	CTTAAG	2 cut(s)	623, 2564
VpaK11BI	GGWCC	3 cut(s)	577, 782, 2498
VspI	ATTAAT	1 cut(s)	1245
XapI	RAATTY	8 cut(s)	643, 865, 1132, 1721, 1820, 2182, 2543, 2810
XbaI	TCTAGA	1 cut(s)	1186
XceI	RCATGY	7 cut(s)	1078, 1217, 1474, 2398, 2470, 2959, 3043
XmaJI	CCTAGG	1 cut(s)	3034
XmiI	GTMKAC	4 cut(s)	114, 2028, 2299, 2880
XmnI	GAANNNNTTC	1 cut(s)	2787
Zsp2I	ATGCAT	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.