Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

24657643 .. 24661730

Gene Structure 4088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGACCTGTCCATCACCACAAGTCTTTCACTTCCCAAGAACTAAATCACAGAGCAGGGGCGGATTCAGCCTGGACTGGGTAGGACTCAAGCCCCACCGCCGAACTCGGTTGGAGAATTGGAGCACTCCCGAGTCTCGACCCGAACACGGAAGATGGAACACCGAACACAGTAACCTGCAAGGCTACAACCAGCAACCCGTCTCCGCCAGTCCGCCTCTGCAGTCTCCGAGCTCCGCCTCCAGGCTCCAGTTCGAAATTGCTGAATTATTCACTCCGGTCACTCCACCGAAAGAGATTGGGAGGTGGATTGAGGAGGATGCTTCCGTTCTTGTTCCTACTGATATAAATCATATAATCAACATTAAGCTTGGGGATATTATTCCAGCACATGCTCGTCTCCTCAACGATGAGTTTAGATTATGTAGTTTTGATATGGGCTTGGATTATGCTAAGGGAATCAATGGAATTAGGAGTATAGCTGGATATGGGATTGAGCAAAATGAAGCTGAAAGGGTATTGCATTTGGCACAAATAGGAAACTCTTGGGTTCTTCAGCTAAGGAAGTCAAAAGGTATTGCATTTGGCACTCTTGATGTATGTTTTATAATGTTTGTAGCAGCAGGTTTCACATACTACTGCTGGAAGTTAATTTCTGTGTTGAAGCAAAGGGTGACAAGTTGTTGGCATCTCAAAATGCACAGCCGTCATAGTGGCGGCGGCTATGTGGCTTATGCTCGAGCGAACTCAAGACTCCCACTTCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

256

Amino Acids

28.88

Weight (kDa)

9.28

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
Acc36I	ACCTGC	2 cut(s)	186, 614
AciI	CCGC	7 cut(s)	63, 100, 207, 215, 237, 717, 720
AcuI	CTGAAG	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	79, 149, 243
AgsI	TTSAA	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	72, 242
AluBI	AGCT	5 cut(s)	234, 370, 482, 509, 559
AluI	AGCT	5 cut(s)	234, 370, 482, 509, 559
Alw21I	GWGCWC	2 cut(s)	128, 236
Alw26I	GTCTC	4 cut(s)	141, 208, 231, 404
Ama87I	CYCGRG	2 cut(s)	131, 738
ApeKI	GCWGC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	9, 685
AsuII	TTCGAA	1 cut(s)	255
AvaI	CYCGRG	2 cut(s)	131, 738
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	128, 236
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	2 cut(s)	22, 150
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	74, 244
BcoDI	GTCTC	4 cut(s)	141, 208, 231, 404
BfmI	CTRYAG	1 cut(s)	221
BfuAI	ACCTGC	2 cut(s)	186, 614
BisI	GCNGC	3 cut(s)	621, 718, 721
BlsI	GCNGC	3 cut(s)	622, 719, 722
Bme1390I	CCNGG	2 cut(s)	74, 244
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	2 cut(s)	131, 738
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	7, 248
BmrFI	CCNGG	2 cut(s)	74, 244
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	310, 697
BmuI	ACTGGG	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	226, 233
Bpu10I	CCTNAGC	2 cut(s)	453, 560
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	74, 733
BsaBI	GATNNNNATC	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 149, 243
Bse1I	ACTGG	3 cut(s)	83, 210, 250
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	74, 244
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	79, 149, 243
BseNI	ACTGG	3 cut(s)	83, 210, 250
BseRI	GAGGAG	2 cut(s)	329, 392
BseXI	GCAGC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	128, 236
BsiHKCI	CYCGRG	2 cut(s)	131, 738
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	79, 149, 243
BsmAI	GTCTC	4 cut(s)	141, 208, 231, 404
BsmBI	CGTCTC	2 cut(s)	208, 404
BsmFI	GGGAC	1 cut(s)	19
BsoBI	CYCGRG	2 cut(s)	131, 738
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	128, 236
BspACI	CCGC	7 cut(s)	63, 100, 207, 215, 237, 717, 720
BspLI	GGNNCC	2 cut(s)	7, 248
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	2 cut(s)	186, 614
BspT104I	TTCGAA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	83, 210, 250
Bst2UI	CCWGG	2 cut(s)	74, 244
Bst4CI	ACNGT	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	453, 560
BstF5I	GGATG	1 cut(s)	325
BstMAI	GTCTC	4 cut(s)	141, 208, 231, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	74, 244
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	72, 242
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	325
BveI	ACCTGC	2 cut(s)	186, 614
Cfr13I	GGNCC	1 cut(s)	6
CviAII	CATG	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	453, 560
EciI	GGCGGA	4 cut(s)	78, 196, 204, 226
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	2 cut(s)	131, 738
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	72, 242
EcoT38I	GRGCYC	1 cut(s)	236
Esp3I	CGTCTC	2 cut(s)	208, 404
FaeI	CATG	1 cut(s)	395
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	621, 718, 721
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	621, 718, 721
GluI	GCNGC	3 cut(s)	621, 718, 721
GsuI	CTGGAG	2 cut(s)	226, 233
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	5 cut(s)	66, 87, 134, 459, 753
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	9, 685
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	4 cut(s)	131, 138, 593, 750
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	181, 223, 523, 581, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	453, 560
Hsp92II	CATG	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	123, 239, 252
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	2 cut(s)	310, 697
MaeIII	GTNAC	3 cut(s)	173, 280, 673
MboII	GAAGA	2 cut(s)	165, 545
MhlI	GDGCHC	2 cut(s)	128, 236
MluCI	AATT	5 cut(s)	118, 258, 266, 468, 651
MlyI	GAGTC	3 cut(s)	81, 143, 747
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	228, 250, 297, 307, 310, 413
MseI	TTAA	2 cut(s)	366, 650
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	74, 244
MvaI	CCWGG	2 cut(s)	74, 244
MwoI	GCNNNNNNNGC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	2 cut(s)	7, 248
NmuCI	GTSAC	2 cut(s)	280, 673
NspI	RCATGY	1 cut(s)	395
NspV	TTCGAA	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	66, 459
PkrI	GCNGC	3 cut(s)	622, 719, 722
PleI	GAGTC	3 cut(s)	81, 142, 747
PpsI	GAGTC	3 cut(s)	81, 142, 747
PpuMI	RGGWCCY	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	72, 242
PspGI	CCWGG	2 cut(s)	72, 242
PspN4I	GGNNCC	2 cut(s)	7, 248
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	366, 650
SatI	GCNGC	3 cut(s)	621, 718, 721
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	3 cut(s)	81, 143, 747
ScrFI	CCNGG	2 cut(s)	74, 244
SduI	GDGCHC	2 cut(s)	128, 236
SfaNI	GCATC	2 cut(s)	310, 697
SfcI	CTRYAG	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	738
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	738
SmlI	CTYRAG	3 cut(s)	89, 738, 748
SmoI	CTYRAG	3 cut(s)	89, 738, 748
Sse9I	AATT	5 cut(s)	118, 258, 266, 468, 651
SsiI	CCGC	7 cut(s)	63, 100, 207, 215, 237, 717, 720
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	72, 242
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	139, 255, 739
TasI	AATT	5 cut(s)	118, 258, 266, 468, 651
TauI	GCSGC	2 cut(s)	720, 723
TfiI	GAWTC	2 cut(s)	66, 459
Tru1I	TTAA	2 cut(s)	366, 650
Tru9I	TTAA	2 cut(s)	366, 650
TseFI	GTSAC	2 cut(s)	280, 673
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	2 cut(s)	280, 673
TspDTI	ATGAA	2 cut(s)	519, 752
TspGWI	ACGGA	2 cut(s)	165, 316
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.