Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Forward (+)

84544869 .. 84552797

Gene Structure 7929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG613600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3216 bp

ATGTCGACCCCGAAACCGCAGAGGTCTAAAGAAGAGCTGGAGGACATAATCCTCCGGAAAATCTTCCAGGTCTCGCTGACGGAGCCGGCCGAGCCCAATTCCCGAGTCGTCTACTTGGAGATGACGGCGGCGGAGATTCTCAGCGAGGGCAAGCCGATGAGGCTCACGCGCGACCTCATGGAGTCGATCCTGATCGACCGTTTAATGGGTAGCTTCGCCGCCGCCGCCGCGGAGCCACCGTTTCAGTACCTAGTCGGGTGTTACCGACGCGCCTACGACGAGGGTCGGAAAATCACCGCCATGAAAGATAAGAACTTGAGGGCGGATATGGAGTCGGTGATTAAGCAGGCGAAGAAGCTTTCGGTTTCGTATTGTAGGATCCATTTAGGGAACCCGGAGGCGTTTCCGGGTTCGGGTTCGGGTTCGGATCCGGCGACGGCGTCAAATGCGTCGCCGTTGCTGCCGTTGATTTTTTCGGAGGTGGGGAGCGGCTCGGTGGATGAGTTTGGAGGGAGTTCTAGTAGTAGTAGTGGAGTTCAGTGCCCACCTGGGTTTTTGGATGAGTTCTTTAGGGACTCGGATTTCGATAGCTTGGACCCAATTTTGAAGGGTTTGTATGAGGAGCTTAGGGAGATTGTGCTTAAGGTTTCGGCATTGGGGAATTTCCAGCAGCCATTGAGGGCTCTGTTGTATTTGGTTAGCTTTCCTGCTGGGGCTAAGAGTCTGGTGAATCACCCTTGGTGGATTCCGAAAGGTGTTTACTTGAATGGGAGGGTTATCGAAAGGACTAGTATTTTGGGTCCTTTTTTTCATGTCAGTGCTTTGCCTGATCATCCTATTTTCAAGAGCCAGCCGGATGTGGGGCAGCAGTGCTTTTCAGAAAATTCTAAGGATAGTGATCTGCGATCTTCGTATGTCACAATAAAGACACATGTGAATAATTTATATGACGGCCTCGCAGAAGTTCTCCTCAAACTATTAAAAAATGCAGAGACCCGTGAGAGTGTTCGTGAGTATCTTGCTGAGGTTATCAACAAAAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGACTTTGCGAGCCATTTCTGGATCCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTCTATGGTGACCGGCTGGAGTTAAGAGGTTTGACTGCTCTACATGCATCATCTGAAGAAGTTATTGAATGGATTAACAAAGATAGTGGTGGTGATGGTCAAAATCGTCTTTCACAATCCCAAGAAGCCACCAGTTCTGGCAGTAATATCTCTCAACCTTCTAGCGTGAAGCCAAGTGGCGAAAAAACTACATATTCATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTGCTCAACCTGGGTTTATTGAAAGCACTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGTCTGAAGATACACTTAAAGCCTTGAAAAGACAGGCACCTTCTCCTCAATTGAAGATCGATATAGCTCGCCTTGAGAAAGAGTTAGAGTTGTATAAACAGGAAAAGCGTTGTCATGAAGCTCAAATACTCACGGATGAACCACTTTTAGAGCGTGCTCTTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTTTGCCGTCAACTTGCCCCGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTCGCTTCCCGGATGCCAAAAGCATTTCATGGGATCTTGTTGGATGAATTTATGAACTTTATTATAATGTTCATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAACTGCTTGATGCCCCGTCCAAGTCATCAATCACCTGCTGCTACAGCTGCTGCTGCTAGCCTGTTCGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTAGACATTGAGTTCACTGGTTCTCATACACAGTTCTATGACAAGTTCAACATCCGCCACAATATTGCTGAACTTCTTGAATATCTTTGGCAAGTCCCCAGTCATCGAAATGCTTGGAAACAGGTAGAGACCAATTTCATGGAAAGACTTGTTAGAAATATTGATTATACGTTCAATACAGTGTACCCTGATCTTTATGCCATGTGCTTGACTACACCAACTTGTATACTGTTCCAGATTGCTAGGGAAGAAGAGAAAGGCGTATATTTGAATTTCTTAAACTTCTTGATCAATGATAGTATATATCTTCTGGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCAAACACCGCAGAATGGGAGCGTAGACCCGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCACTCTCAAGAAAATATTATCCGAATTGATATGAAGTTAGCAAATGAAGATGTGAGTATGTTGGCATTTACTACAGAACAAATTACAGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCAAGTATGCTCAATTATTTTTTGTTGCAATTAGTAGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCGGAGAAGTATGAGTTCCGCCCAAAGCAATTGCTTAAGCAGATTGTGTACATATATGTCAATCTGGCAAGAGGTGATACGGAAAATATCTTTCCAGCTGCTATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTCAGTGCTGCTGCAGATGTCCTAAGGAGAATTGGTGAAGATGGAAGGGTCATACAGGAGTTTGTTGAGCTTGGTTCCAAAGCCAAGGTTGCTGCTTCTGAGGCCATGGATGCTGAAGCTGTTCTTGGGGATATACCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCGGATAATGATTTGAAGGCAAAAATACAAGAGTTTATTAGGTCGCAACAGTCGAAGCGCGGGGAAAGCCTTAGCATGCAGAGTGATAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1071

Amino Acids

121.41

Weight (kDa)

5.5

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	266 - 957	3.5e-194	Ubiquitin elongating factor core
U-box	PF04564	974 - 1045	1.1e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1844
AarI	CACCTGC	1 cut(s)	1954
AasI	GACNNNNNNGTC	1 cut(s)	3008
Acc36I	ACCTGC	1 cut(s)	1954
AccB1I	GGYRCC	2 cut(s)	1519, 1983
AccBSI	CCGCTC	2 cut(s)	489, 2426
AccI	GTMKAC	6 cut(s)	5, 111, 2034, 2257, 2419, 3000
AccII	CGCG	5 cut(s)	169, 171, 230, 270, 3144
AccIII	TCCGGA	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	7 cut(s)	661, 883, 1150, 1727, 1826, 2302, 2930
AcuI	CTGAAG	3 cut(s)	1263, 1509, 2922
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	5 cut(s)	248, 1470, 2216, 2699, 2951
AfiI	CCNNNNNNNGG	5 cut(s)	205, 413, 860, 1660, 2409
AflII	CTTAAG	2 cut(s)	641, 2684
AflIII	ACRYGT	2 cut(s)	931, 3075
AgeI	ACCGGT	1 cut(s)	1653
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	3 cut(s)	66, 547, 1428
AjuI	GAANNNNNNNTTGG	2 cut(s)	2895, 2927
Alw21I	GWGCWC	2 cut(s)	1425, 1642
Alw26I	GTCTC	4 cut(s)	76, 986, 1998, 2153
AlwNI	CAGNNNCTG	1 cut(s)	1961
Ama87I	CYCGRG	2 cut(s)	102, 1997
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	4 cut(s)	87, 952, 2889, 3005
ApoI	RAATTY	7 cut(s)	661, 883, 1150, 1727, 1826, 2302, 2930
ArsI	GACNNNNNNTTYG	4 cut(s)	566, 598, 778, 810
AsiGI	ACCGGT	1 cut(s)	1653
Asp700I	GAANNNNTTC	2 cut(s)	62, 2907
AspLEI	GCGC	3 cut(s)	171, 272, 3144
AspS9I	GGNCC	3 cut(s)	595, 800, 2618
AsuC2I	CCSGG	4 cut(s)	395, 408, 1789, 2651
AsuHPI	GGTGA	9 cut(s)	286, 349, 725, 739, 1208, 1292, 1935, 2735, 2834
AsuII	TTCGAA	1 cut(s)	1977
AsuNHI	GCTAGC	1 cut(s)	1967
AvaI	CYCGRG	2 cut(s)	102, 1997
AvaII	GGWCC	3 cut(s)	595, 800, 2618
AxyI	CCTNAGG	1 cut(s)	2810
BaeGI	GKGCMC	2 cut(s)	545, 1986
BamHI	GGATCC	4 cut(s)	378, 427, 1144, 2965
BanI	GGYRCC	2 cut(s)	1519, 1983
BanII	GRGCYC	3 cut(s)	96, 685, 1054
BarI	GAAGNNNNNNTAC	2 cut(s)	1593, 1625
Bbv12I	GWGCWC	2 cut(s)	1425, 1642
BbvCI	CCTCAGC	1 cut(s)	1023
BccI	CCATC	7 cut(s)	1277, 1654, 1891, 2560, 2756, 2822, 3069
BceAI	ACGGC	6 cut(s)	141, 439, 448, 453, 967, 1693
BciT130I	CCWGG	3 cut(s)	68, 549, 1430
BclI	TGATCA	2 cut(s)	829, 2319
BcnI	CCSGG	4 cut(s)	395, 408, 1789, 2651
BcoDI	GTCTC	4 cut(s)	76, 986, 1998, 2153
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	9 cut(s)	251, 519, 789, 1350, 1466, 1673, 1968, 2274, 3195
BfmI	CTRYAG	3 cut(s)	1953, 2529, 2799
BfrI	CTTAAG	2 cut(s)	641, 2684
BfuAI	ACCTGC	1 cut(s)	1954
BglI	GCCNNNNNGGC	1 cut(s)	160
Bme1390I	CCNGG	7 cut(s)	68, 395, 408, 549, 1430, 1789, 2651
Bme18I	GGWCC	3 cut(s)	595, 800, 2618
BmeT110I	CYCGRG	2 cut(s)	102, 1997
BmgT120I	GGNCC	3 cut(s)	595, 800, 2618
BmrFI	CCNGG	7 cut(s)	68, 395, 408, 549, 1430, 1789, 2651
BmrI	ACTGGG	1 cut(s)	2124
BmsI	GCATC	8 cut(s)	1244, 1471, 1742, 1750, 1782, 1911, 2887, 3031
BmtI	GCTAGC	1 cut(s)	1971
BmuI	ACTGGG	1 cut(s)	2124
BoxI	GACNNNNGTC	1 cut(s)	282
BpmI	CTGGAG	3 cut(s)	59, 1226, 2402
Bpu10I	CCTNAGC	3 cut(s)	626, 1023, 3155
Bpu14I	TTCGAA	1 cut(s)	1977
BpuEI	CTTGAG	4 cut(s)	337, 1577, 2412, 2448
BpuMI	CCSGG	4 cut(s)	395, 408, 1789, 2651
Bsa29I	ATCGAT	1 cut(s)	1542
BsaBI	GATNNNNATC	2 cut(s)	191, 897
BsaHI	GRCGYC	1 cut(s)	440
BsaI	GGTCTC	3 cut(s)	76, 986, 2153
BsaJI	CCNNGG	8 cut(s)	228, 548, 737, 1429, 1722, 1764, 2871, 2892
BsaWI	WCCGGW	3 cut(s)	54, 1653, 3085
BsaXI	ACNNNNNCTCC	6 cut(s)	224, 254, 505, 535, 2806, 2836
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 413, 860, 1660, 2409
Bse118I	RCCGGY	4 cut(s)	85, 1200, 1653, 3003
Bse1I	ACTGG	5 cut(s)	1320, 2053, 2130, 2385, 2969
Bse21I	CCTNAGG	1 cut(s)	2810
Bse8I	GATNNNNATC	2 cut(s)	191, 897
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	68, 549, 1430
BseCI	ATCGAT	1 cut(s)	1542
BseDI	CCNNGG	8 cut(s)	228, 548, 737, 1429, 1722, 1764, 2871, 2892
BseJI	GATNNNNATC	2 cut(s)	191, 897
BseLI	CCNNNNNNNGG	5 cut(s)	205, 413, 860, 1660, 2409
BseMII	CTCAG	6 cut(s)	154, 1014, 1120, 2379, 2553, 2877
BseNI	ACTGG	5 cut(s)	1320, 2053, 2130, 2385, 2969
BseRI	GAGGAG	3 cut(s)	635, 959, 1518
BseSI	GKGCMC	2 cut(s)	545, 1986
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	5 cut(s)	169, 171, 230, 270, 3144
Bsh1285I	CGRYCG	2 cut(s)	90, 199
BshFI	GGCC	4 cut(s)	89, 954, 2891, 3007
BshNI	GGYRCC	2 cut(s)	1519, 1983
BshTI	ACCGGT	1 cut(s)	1653
BshVI	ATCGAT	1 cut(s)	1542
BsiEI	CGRYCG	2 cut(s)	90, 199
BsiHKAI	GWGCWC	2 cut(s)	1425, 1642
BsiHKCI	CYCGRG	2 cut(s)	102, 1997
BslFI	GGGAC	3 cut(s)	587, 1178, 2111
BslI	CCNNNNNNNGG	5 cut(s)	205, 413, 860, 1660, 2409
BsmAI	GTCTC	4 cut(s)	76, 986, 1998, 2153
BsmFI	GGGAC	3 cut(s)	587, 1178, 2111
BsmI	GAATGC	1 cut(s)	1403
BsnI	GGCC	4 cut(s)	89, 954, 2891, 3007
Bso31I	GGTCTC	3 cut(s)	76, 986, 2153
BsoBI	CYCGRG	2 cut(s)	102, 1997
Bsp119I	TTCGAA	1 cut(s)	1977
Bsp1286I	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1425, 1642, 1986
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	2697
Bsp19I	CCATGG	2 cut(s)	1764, 2892
BspANI	GGCC	4 cut(s)	89, 954, 2891, 3007
BspCNI	CTCAG	6 cut(s)	153, 1015, 1119, 2380, 2554, 2878
BspDI	ATCGAT	1 cut(s)	1542
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	5 cut(s)	169, 171, 230, 270, 3144
BspHI	TCATGA	2 cut(s)	1407, 1597
BspMAI	CTGCAG	1 cut(s)	2803
BspMI	ACCTGC	1 cut(s)	1954
BspOI	GCTAGC	1 cut(s)	1971
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	1977
BspT107I	GGYRCC	2 cut(s)	1519, 1983
BspTI	CTTAAG	2 cut(s)	641, 2684
BspTNI	GGTCTC	3 cut(s)	76, 986, 2153
BsrBI	CCGCTC	2 cut(s)	489, 2426
BsrFI	RCCGGY	4 cut(s)	85, 1200, 1653, 3003
BsrGI	TGTACA	1 cut(s)	2697
BsrI	ACTGG	5 cut(s)	1320, 2053, 2130, 2385, 2969
BssAI	RCCGGY	4 cut(s)	85, 1200, 1653, 3003
BssECI	CCNNGG	8 cut(s)	228, 548, 737, 1429, 1722, 1764, 2871, 2892
BssNAI	GTATAC	1 cut(s)	2258
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	4 cut(s)	737, 1764, 2871, 2892
Bst1107I	GTATAC	1 cut(s)	2258
Bst2UI	CCWGG	3 cut(s)	68, 549, 1430
Bst4CI	ACNGT	9 cut(s)	200, 240, 1992, 2064, 2212, 2262, 2998, 3056, 3135
Bst6I	CTCTTC	2 cut(s)	27, 2277
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	2 cut(s)	641, 2684
BstAUI	TGTACA	1 cut(s)	2697
BstBI	TTCGAA	1 cut(s)	1977
BstC8I	GCNNGC	9 cut(s)	87, 152, 348, 851, 1133, 1552, 1638, 1969, 3161
BstDSI	CCRYGG	4 cut(s)	228, 1722, 1764, 2892
BstEII	GGTNACC	1 cut(s)	1196
BstFNI	CGCG	5 cut(s)	169, 171, 230, 270, 3144
BstHHI	GCGC	3 cut(s)	171, 272, 3144
BstMAI	GTCTC	4 cut(s)	76, 986, 1998, 2153
BstMCI	CGRYCG	2 cut(s)	90, 199
BstNI	CCWGG	3 cut(s)	68, 549, 1430
BstNSI	RCATGY	6 cut(s)	935, 1096, 1235, 1480, 3079, 3163
BstPAI	GACNNNNGTC	1 cut(s)	282
BstPI	GGTNACC	1 cut(s)	1196
BstSCI	CCNGG	7 cut(s)	66, 393, 406, 547, 1428, 1787, 2649
BstSFI	CTRYAG	3 cut(s)	1953, 2529, 2799
BstSLI	GKGCMC	2 cut(s)	545, 1986
BstUI	CGCG	5 cut(s)	169, 171, 230, 270, 3144
BstX2I	RGATCY	5 cut(s)	378, 427, 1144, 1812, 2965
BstXI	CCANNNNNNTGG	1 cut(s)	2170
BstYI	RGATCY	5 cut(s)	378, 427, 1144, 1812, 2965
BstZ17I	GTATAC	1 cut(s)	2258
BstZI	CGGCCG	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	1542
Bsu36I	CCTNAGG	1 cut(s)	2810
BsuRI	GGCC	4 cut(s)	89, 954, 2891, 3007
BsuTUI	ATCGAT	1 cut(s)	1542
BtgI	CCRYGG	4 cut(s)	228, 1722, 1764, 2892
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	7 cut(s)	545, 823, 875, 1114, 2046, 2217, 2797
BveI	ACCTGC	1 cut(s)	1954
Cac8I	GCNNGC	9 cut(s)	87, 152, 348, 851, 1133, 1552, 1638, 1969, 3161
CaiI	CAGNNNCTG	1 cut(s)	1961
CciI	TCATGA	2 cut(s)	1407, 1597
CfoI	GCGC	3 cut(s)	171, 272, 3144
Cfr10I	RCCGGY	4 cut(s)	85, 1200, 1653, 3003
Cfr13I	GGNCC	3 cut(s)	595, 800, 2618
Cfr42I	CCGCGG	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	1542
CseI	GACGC	3 cut(s)	276, 429, 438
Csp6I	GTAC	5 cut(s)	247, 1469, 2215, 2698, 2950
CspAI	ACCGGT	1 cut(s)	1653
CspCI	CAANNNNNGTGG	2 cut(s)	1255, 1290
CviQI	GTAC	5 cut(s)	247, 1469, 2215, 2698, 2950
DraI	TTTAAA	1 cut(s)	1696
DrdI	GACNNNNNNGTC	1 cut(s)	3008
DseDI	GACNNNNNNGTC	1 cut(s)	3008
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	27, 2277
EarI	CTCTTC	2 cut(s)	27, 2277
EciI	GGCGGA	4 cut(s)	146, 338, 2075, 2657
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	4 cut(s)	737, 1764, 2871, 2892
Eco24I	GRGCYC	3 cut(s)	96, 685, 1054
Eco31I	GGTCTC	3 cut(s)	76, 986, 2153
Eco47I	GGWCC	3 cut(s)	595, 800, 2618
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	1263, 1509, 2922
Eco81I	CCTNAGG	1 cut(s)	2810
Eco88I	CYCGRG	2 cut(s)	102, 1997
Eco91I	GGTNACC	1 cut(s)	1196
EcoO109I	RGGNCCY	2 cut(s)	800, 2618
EcoO65I	GGTNACC	1 cut(s)	1196
EcoRI	GAATTC	1 cut(s)	2930
EcoRII	CCWGG	3 cut(s)	66, 547, 1428
EcoT14I	CCWWGG	4 cut(s)	737, 1764, 2871, 2892
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	3 cut(s)	96, 685, 1054
ErhI	CCWWGG	4 cut(s)	737, 1764, 2871, 2892
FalI	AAGNNNNNCTT	4 cut(s)	1482, 1514, 2895, 2927
FaqI	GGGAC	3 cut(s)	587, 1178, 2111
FauI	CCCGC	3 cut(s)	2431, 2456, 3137
FbaI	TGATCA	2 cut(s)	829, 2319
FblI	GTMKAC	6 cut(s)	5, 111, 2034, 2257, 2419, 3000
FriOI	GRGCYC	3 cut(s)	96, 685, 1054
FspBI	CTAG	9 cut(s)	251, 519, 789, 1350, 1466, 1673, 1968, 2274, 3195
GlaI	GCGC	3 cut(s)	170, 271, 3143
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	3 cut(s)	59, 1226, 2402
HaeIII	GGCC	4 cut(s)	89, 954, 2891, 3007
HgaI	GACGC	3 cut(s)	276, 429, 438
HhaI	GCGC	3 cut(s)	171, 272, 3144
Hin1I	GRCGYC	1 cut(s)	440
Hin6I	GCGC	3 cut(s)	169, 270, 3142
HinP1I	GCGC	3 cut(s)	169, 270, 3142
HincII	GTYRAC	2 cut(s)	6, 1713
HindII	GTYRAC	2 cut(s)	6, 1713
HindIII	AAGCTT	1 cut(s)	356
HphI	GGTGA	9 cut(s)	286, 349, 725, 739, 1208, 1292, 1935, 2735, 2834
Hpy99I	CGWCG	4 cut(s)	270, 281, 439, 454
HpyAV	CCTTC	8 cut(s)	601, 1356, 1533, 1973, 2826, 2956, 2991, 3094
HpyCH4III	ACNGT	9 cut(s)	200, 240, 1992, 2064, 2212, 2262, 2998, 3056, 3135
HpyCH4IV	ACGT	1 cut(s)	2201
HpyCH4V	TGCA	8 cut(s)	989, 1082, 1235, 1480, 1733, 2608, 2801, 3163
HpySE526I	ACGT	1 cut(s)	2201
Hsp92I	GRCGYC	1 cut(s)	440
HspAI	GCGC	3 cut(s)	169, 270, 3142
Kpn2I	TCCGGA	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	829, 2319
KspI	CCGCGG	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	6 cut(s)	82, 232, 486, 622, 2413, 2551
LweI	GCATC	8 cut(s)	1244, 1471, 1742, 1750, 1782, 1911, 2887, 3031
MaeI	CTAG	9 cut(s)	251, 519, 789, 1350, 1466, 1673, 1968, 2274, 3195
MaeII	ACGT	1 cut(s)	2201
MaeIII	GTNAC	3 cut(s)	260, 916, 1196
MbiI	CCGCTC	2 cut(s)	489, 2426
MfeI	CAATTG	2 cut(s)	1532, 2678
MflI	RGATCY	5 cut(s)	378, 427, 1144, 1812, 2965
MhlI	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1425, 1642, 1986
MlyI	GAGTC	5 cut(s)	114, 191, 341, 569, 730
MmeI	TCCRAC	2 cut(s)	266, 1800
Mph1103I	ATGCAT	1 cut(s)	1237
MroI	TCCGGA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	62, 2907
MslI	CAYNNNNRTG	4 cut(s)	299, 816, 2139, 2957
MspA1I	CMGCKG	3 cut(s)	230, 1958, 2747
MspCI	CTTAAG	2 cut(s)	641, 2684
MspR9I	CCNGG	7 cut(s)	68, 395, 408, 549, 1430, 1789, 2651
MunI	CAATTG	2 cut(s)	1532, 2678
Mva1269I	GAATGC	1 cut(s)	1403
MvaI	CCWGG	3 cut(s)	68, 549, 1430
MvnI	CGCG	5 cut(s)	169, 171, 230, 270, 3144
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	4 cut(s)	395, 408, 1789, 2651
NcoI	CCATGG	2 cut(s)	1764, 2892
NgoMIV	GCCGGC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	1967
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	916, 1196
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	6 cut(s)	935, 1096, 1235, 1480, 3079, 3163
NspV	TTCGAA	1 cut(s)	1977
PaeI	GCATGC	1 cut(s)	3163
PaeR7I	CTCGAG	1 cut(s)	1997
PagI	TCATGA	2 cut(s)	1407, 1597
PaqCI	CACCTGC	1 cut(s)	1954
PciI	ACATGT	2 cut(s)	931, 3075
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	431, 3134
PctI	GAATGC	1 cut(s)	1403
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	62, 2907
PfeI	GAWTC	6 cut(s)	136, 730, 745, 2014, 2362, 2991
PflFI	GACNNNGTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	1787
PinAI	ACCGGT	1 cut(s)	1653
PleI	GAGTC	5 cut(s)	113, 190, 340, 569, 729
PpsI	GAGTC	5 cut(s)	113, 190, 340, 569, 729
PpuMI	RGGWCCY	2 cut(s)	800, 2618
PscI	ACATGT	2 cut(s)	931, 3075
PshAI	GACNNNNGTC	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	1844
Psp5II	RGGWCCY	2 cut(s)	800, 2618
Psp6I	CCWGG	3 cut(s)	66, 547, 1428
PspEI	GGTNACC	1 cut(s)	1196
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	3 cut(s)	66, 547, 1428
PspPI	GGNCC	3 cut(s)	595, 800, 2618
PspPPI	RGGWCCY	2 cut(s)	800, 2618
PstI	CTGCAG	1 cut(s)	2803
PstNI	CAGNNNCTG	1 cut(s)	1961
PsuI	RGATCY	5 cut(s)	378, 427, 1144, 1812, 2965
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	1958, 2747
RsaI	GTAC	5 cut(s)	248, 1470, 2216, 2699, 2951
RsaNI	GTAC	5 cut(s)	247, 1469, 2215, 2698, 2950
RseI	CAYNNNNRTG	4 cut(s)	299, 816, 2139, 2957
SacII	CCGCGG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	595, 800, 2618
SchI	GAGTC	5 cut(s)	114, 191, 341, 569, 730
ScrFI	CCNGG	7 cut(s)	68, 395, 408, 549, 1430, 1789, 2651
SduI	GDGCHC	7 cut(s)	96, 545, 685, 1054, 1425, 1642, 1986
SfaNI	GCATC	8 cut(s)	1244, 1471, 1742, 1750, 1782, 1911, 2887, 3031
SfcI	CTRYAG	3 cut(s)	1953, 2529, 2799
Sfr274I	CTCGAG	1 cut(s)	1997
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1977
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	3 cut(s)	595, 800, 2618
SlaI	CTCGAG	1 cut(s)	1997
SmiMI	CAYNNNNRTG	4 cut(s)	299, 816, 2139, 2957
SmlI	CTYRAG	7 cut(s)	316, 641, 1556, 1997, 2427, 2463, 2684
SmoI	CTYRAG	7 cut(s)	316, 641, 1556, 1997, 2427, 2463, 2684
SpeI	ACTAGT	1 cut(s)	788
SphI	GCATGC	1 cut(s)	3163
SspI	AATATT	3 cut(s)	2095, 2191, 2473
SspMI	CTAG	9 cut(s)	251, 519, 789, 1350, 1466, 1673, 1968, 2274, 3195
StyD4I	CCNGG	7 cut(s)	66, 393, 406, 547, 1428, 1787, 2649
StyI	CCWWGG	4 cut(s)	737, 1764, 2871, 2892
TaaI	ACNGT	9 cut(s)	200, 240, 1992, 2064, 2212, 2262, 2998, 3056, 3135
TaiI	ACGT	1 cut(s)	2204
TatI	WGTACW	3 cut(s)	1468, 2697, 2949
TauI	GCSGC	6 cut(s)	131, 221, 224, 227, 230, 492
TfiI	GAWTC	6 cut(s)	136, 730, 745, 2014, 2362, 2991
TscAI	CASTG	7 cut(s)	545, 823, 875, 1114, 2053, 2217, 2797
TseFI	GTSAC	2 cut(s)	916, 1196
Tsp45I	GTSAC	2 cut(s)	916, 1196
TspGWI	ACGGA	3 cut(s)	95, 1631, 2744
TspRI	CASTG	7 cut(s)	545, 823, 875, 1114, 2053, 2217, 2797
Tth111I	GACNNNGTC	1 cut(s)	439
Vha464I	CTTAAG	2 cut(s)	641, 2684
VpaK11BI	GGWCC	3 cut(s)	595, 800, 2618
XapI	RAATTY	7 cut(s)	661, 883, 1150, 1727, 1826, 2302, 2930
XceI	RCATGY	6 cut(s)	935, 1096, 1235, 1480, 3079, 3163
XhoI	CTCGAG	1 cut(s)	1997
XmiI	GTMKAC	6 cut(s)	5, 111, 2034, 2257, 2419, 3000
XmnI	GAANNNNTTC	2 cut(s)	62, 2907
XspI	CTAG	9 cut(s)	251, 519, 789, 1350, 1466, 1673, 1968, 2274, 3195
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.