Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

4436307 .. 4442293

Gene Structure 5987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1056200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGGCGACCCCGAAACCCCAGCGGTCCCGGGAGGAGTTGGAGGACATAGTCCTCCGCAAAATCTTTCTTGTATCGCTGACCGGTTCATCGGACTCCGATTCCCGAATTGTTTACTTGGAGATGACTGCGGCAGAGATTCTCAGCGAGGGGAAAGAGTTGAGGCTCACTCGCGACCTCATGGAATCGGTTCTAATCGATCGGCTCTCCGGCAGCTTCCCCGCTGCTGAACCGCCGTTCCAGTACCTGATCGGGTGCTACAAACGGGCCTACGACGAGGGTAAGAAAATTGCTTCCATGAAAGATAAGAACGTGAAGTCTGAATTGGAATCTTTGGTTAGGCAAGCGAAGAAGCTTTCGGTTTCGTATTGTAGGATTCATTTGGGAAATCCCGAATCGTTCCCCAACCCGAATTTCGATTCGAATAAGTCGAATGCGTCGCCTTTATTGCCATTGATTTTCTCAGAGGGCGGCGGTTCGGTTGATGGGTTCGGAGGAAGTGGGAGTAGTGGGAGAATTCAGTGCCCACCTGGGTTTTTGGAGGAGTTCTTCACTGACTCCGATTTGGATAGCTTGGACCCAATTTTGAAGGGGTTGTATGAGGAGCTTAGGGAGATTGTGCTTAAGGTTTCGGCCCTCGGAAACTTCCAGCAGCCATTGAGGGCTCTGTATTTGTTGGTTAAGTTTCCGTTTGGTGCAAGGTCACTCGTGAATCACCCATGGTGGATTCCGAAAGGGGTGTACTTGAACGGGCGTGTGATTGAGAGGACTAGCATTTTGGGTCCTTTTTTTCATGTCAGTGCTCTGCCTGATCATCCTATTTTCAAGAGCCAGCCTGATGTTGGGCAGCAGTGCTTTTCTGACTCTTCAACTCGTAGACCAGCTGATCTGCTATCTTCATTTGCCACAATTAAGACAGTCATGAGTAACTTATACGATGGCCTTACTGAAGTTCTTCTCTTACTACTGAAAAATGCTGACACTCGTGAGAATGTTCTTGAGTATCTAGCAGAGGTGATCAACAAAAACTCATCAAGGGCCCATATTCAGGTGGATCCTCTTTCATGTGCAAGTTCAGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGGCTTTGTGAGCCGTTTTTGGATGCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTTTACAGTAACCGTTTGGAGTTAAGAGGTTTGACTGCTTTACATGCATCATCTGAAGAAGTAACTGAATGGATTAATAAAGCTAATATGGGGAGTACTGATGGTGAAAATCGCCTTTTACAATCTCAAGAAGCCACCAGTTCCGGTAATAGTGTCAACGTGAAGCCAAGCAGTGAAAAAGCTAAATATTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGTTTGCTGAAAGCATTTTCTGACTTTAAACATTTAGTACAGGACATTTCAAGGTCTGAAGATACTCTTTCCACACTTAAAGCCATGCAAGGCCAGACATCTTCTCCACAATTGGAGATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTCGTATTCGCAGGAAAAGCTTTGTTACGAAGCTCAGATATTAAGGGATCCGACACTTATACAGAGTGCTCTTACTTTCTACCGTTTGATGGTGGTGTGGCTAGTTCGCTTAGTTGGTGGATTTAAAATGCCTCTACCATCAACTTGCCCCATGGAGTTTGCTTCTATGCCTGAGCATTTTGTGGAAGATGCCATGGAGTTGCTTATATTTGCTTCCCGGATTCCAAAAGCCTTGGATGGGGTTTTGTTGGATGATTTTATGAACTTCATTATAATGTTTATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTAAACTGCTGGATGCCCCGTAGAAGTGGATCATCTGCTACAGCGACCCTATTTGAAGGGCACCAACTATCTCTTGAGTATCTTGTGAGGAATCTCTTGAAGCTATATGTCGACATTGAGTTCACTGGCTCTCACACACAGTTCTATGACAAGTTTAATATTCGCCACAACATTGCTGAACTTCTTGAATATCTGTGGCATGTCCCTAGTCATCGAAATGCTTGGAAACAGATTGCTAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTAAACTTTTTGATCAATGATAGCATCTATCTTCTGGATGAAAGTCTTAACAAAATTCTTGAACTCAAAGAACTGGAAGCTGAGATGTCGAACACTGCAGAATGGGAGCGCAGACCTGCTCAAGAAAGGCAGGAGAGAACCCGCCTATTCCATTCTCAAGAGAATATTATCCGAATAGATATGAAATTAGCAAATGAAGACGTTAGTATGCTGGCATTTACTACAGAGCAGATTACAGCTCCTTTTCTACTTCCTGAGATGGTTGAAAGGGTGGCCAGCATGCTCAATTACTTTTTGTTGCAATTAGTAGGCCCTCAAAGAAAATCGCTTAGTTTGAAAGACCCTGAGAAATATGAATTCCGTCCAAAGCAATTGCTTAAGCAGATTGTATACATATATGTTCATTTGGCAAAGGGTGATTCAGAAAATATATTTCCAGCTGCCATCTCAAAGGATGGTCGGTCGTACAATGAGCAGTTGTTTAGTGCTGCGGCGGATGTCCTAAGGAAAATTGGTGAAGATGGGAGGATCATACGAGAGTTTATCGAGTTAGGTGCGAAAGCAAAGGTTGCTGCTTCGGAGGCCATGGACACTGAAGCTACTCTTGGGGATATACCAGATGAATTCCTCGATCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCGTCTTCAAGAATCACGGTAGACCGGCCCGTCATTCAAAGGCATCTTCTTAGTGATAGCTCTGATCCGTTCAACCGATCACATCTTACTGCGGACATGCTGATACCAGACAATGAATTAAAGGCAAGGATACAGGAGTTCATTAGGTCCCAAGAATCGAAGAAGCACGGGGAAGACTTGAGCACGCAGAGCACCAAGGCGACGATACAAACTACAACTAGTGAGATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1026

Amino Acids

116.22

Weight (kDa)

5.47

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	259 - 910	5.1e-207	Ubiquitin elongating factor core
U-box	PF04564	927 - 998	4.8e-30	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1832
AasI	GACNNNNNNGTC	1 cut(s)	2867
Acc36I	ACCTGC	1 cut(s)	2290
AccB1I	GGYRCC	1 cut(s)	1956
AccI	GTMKAC	4 cut(s)	874, 2007, 2556, 2859
AccII	CGCG	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	2439
AcsI	RAATTY	7 cut(s)	409, 513, 1135, 2161, 2220, 2522, 2789
AcuI	CTGAAG	4 cut(s)	966, 1248, 1488, 2781
AfaI	GTAC	6 cut(s)	242, 740, 1270, 1449, 2633, 2810
AfiI	CCNNNNNNNGG	5 cut(s)	839, 1045, 1549, 1648, 1797
AflII	CTTAAG	2 cut(s)	620, 2543
AgeI	ACCGGT	1 cut(s)	80
AhlI	ACTAGT	1 cut(s)	3056
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	6 cut(s)	305, 337, 395, 427, 2754, 2786
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
Alw21I	GWGCWC	5 cut(s)	802, 1404, 1630, 3023, 3032
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	9 cut(s)	264, 630, 937, 1035, 1501, 2439, 2476, 2748, 2864
ApaI	GGGCCC	1 cut(s)	1039
ApeKI	GCWGC	7 cut(s)	210, 221, 649, 844, 2606, 2654, 2738
ApoI	RAATTY	7 cut(s)	409, 513, 1135, 2161, 2220, 2522, 2789
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
AseI	ATTAAT	1 cut(s)	1248
AsiGI	ACCGGT	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	186, 951
AspLEI	GCGC	1 cut(s)	2277
AsuC2I	CCSGG	3 cut(s)	28, 29, 1777
AsuHPI	GGTGA	5 cut(s)	704, 1024, 1289, 2594, 2693
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	4 cut(s)	24, 574, 779, 2985
AxyI	CCTNAGG	1 cut(s)	2669
BaeGI	GKGCMC	3 cut(s)	524, 1039, 1959
BaeI	ACNNNNGTAYC	2 cut(s)	2960, 2993
BalI	TGGCCA	1 cut(s)	2441
BamHI	GGATCC	3 cut(s)	1051, 1606, 2824
BanI	GGYRCC	1 cut(s)	1956
BanII	GRGCYC	2 cut(s)	664, 1039
BarI	GAAGNNNNNNTAC	2 cut(s)	2138, 2170
BauI	CACGAG	2 cut(s)	704, 981
BbsI	GAAGAC	3 cut(s)	2370, 2835, 3018
Bbv12I	GWGCWC	5 cut(s)	802, 1404, 1630, 3023, 3032
BbvI	GCAGC	7 cut(s)	208, 222, 661, 856, 2593, 2641, 2725
BceAI	ACGGC	2 cut(s)	217, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	2702, 2736
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	2961
BclI	TGATCA	3 cut(s)	808, 1014, 2178
BcnI	CCSGG	3 cut(s)	28, 29, 1777
BcuI	ACTAGT	1 cut(s)	3056
BfaI	CTAG	5 cut(s)	768, 1004, 1661, 2103, 3057
BfmI	CTRYAG	3 cut(s)	1935, 2262, 2388
BfrI	CTTAAG	2 cut(s)	620, 2543
BfuAI	ACCTGC	1 cut(s)	2290
BfuI	GTATCC	1 cut(s)	2961
BmcAI	AGTACT	1 cut(s)	1270
Bme1390I	CCNGG	4 cut(s)	28, 29, 528, 1777
Bme18I	GGWCC	4 cut(s)	24, 574, 779, 2985
BmeT110I	CYCGRG	1 cut(s)	27
BmrFI	CCNGG	4 cut(s)	28, 29, 528, 1777
BmsI	GCATC	7 cut(s)	1120, 1229, 1738, 1899, 2199, 2890, 3054
BpiI	GAAGAC	3 cut(s)	2370, 2835, 3018
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
Bpu10I	CCTNAGC	3 cut(s)	605, 1731, 2133
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	7 cut(s)	1016, 1284, 1565, 1991, 2271, 2307, 3037
BpuMI	CCSGG	3 cut(s)	28, 29, 1777
Bsa29I	ATCGAT	1 cut(s)	195
BsaJI	CCNNGG	9 cut(s)	27, 527, 634, 716, 1710, 1752, 1791, 2751, 3033
BsaWI	WCCGGW	2 cut(s)	80, 1316
BsaXI	ACNNNNNCTCC	2 cut(s)	1498, 1528
Bsc4I	CCNNNNNNNGG	5 cut(s)	839, 1045, 1549, 1648, 1797
Bse118I	RCCGGY	2 cut(s)	80, 2862
Bse1I	ACTGG	5 cut(s)	238, 1311, 2026, 2244, 2828
Bse21I	CCTNAGG	1 cut(s)	2669
Bse3DI	GCAATG	1 cut(s)	2067
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	9 cut(s)	27, 527, 634, 716, 1710, 1752, 1791, 2751, 3033
BseGI	GGATG	8 cut(s)	811, 1135, 1801, 1816, 1914, 2209, 2626, 2668
BseLI	CCNNNNNNNGG	5 cut(s)	839, 1045, 1549, 1648, 1797
BseMI	GCAATG	1 cut(s)	2067
BseMII	CTCAG	8 cut(s)	154, 474, 1105, 1607, 1722, 2238, 2412, 2502
BseNI	ACTGG	5 cut(s)	238, 1311, 2026, 2244, 2828
BseRI	GAGGAG	4 cut(s)	47, 554, 614, 2156
BseSI	GKGCMC	3 cut(s)	524, 1039, 1959
BseXI	GCAGC	7 cut(s)	208, 222, 661, 856, 2593, 2641, 2725
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	2 cut(s)	199, 2630
BshFI	GGCC	9 cut(s)	266, 632, 939, 1037, 1503, 2441, 2478, 2750, 2866
BshNI	GGYRCC	1 cut(s)	1956
BshTI	ACCGGT	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	195
BsiEI	CGRYCG	2 cut(s)	199, 2630
BsiHKAI	GWGCWC	5 cut(s)	802, 1404, 1630, 3023, 3032
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	6 cut(s)	28, 81, 207, 1317, 1777, 2863
BslFI	GGGAC	4 cut(s)	10, 1163, 2084, 2971
BslI	CCNNNNNNNGG	5 cut(s)	839, 1045, 1549, 1648, 1797
BsmFI	GGGAC	4 cut(s)	10, 1163, 2084, 2971
BsmI	GAATGC	2 cut(s)	436, 1382
BsnI	GGCC	9 cut(s)	266, 632, 939, 1037, 1503, 2441, 2478, 2750, 2866
BsoBI	CYCGRG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	419
Bsp120I	GGGCCC	1 cut(s)	1035
Bsp1286I	GDGCHC	9 cut(s)	524, 664, 802, 1039, 1404, 1630, 1959, 3023, 3032
Bsp19I	CCATGG	4 cut(s)	716, 1710, 1752, 2751
Bsp68I	TCGCGA	1 cut(s)	171
BspANI	GGCC	9 cut(s)	266, 632, 939, 1037, 1503, 2441, 2478, 2750, 2866
BspCNI	CTCAG	8 cut(s)	153, 473, 1104, 1606, 1723, 2239, 2413, 2503
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	2 cut(s)	918, 1386
BspMAI	CTGCAG	1 cut(s)	2266
BspMI	ACCTGC	1 cut(s)	2290
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	1956
BspTI	CTTAAG	2 cut(s)	620, 2543
BsrDI	GCAATG	1 cut(s)	2067
BsrFI	RCCGGY	2 cut(s)	80, 2862
BsrI	ACTGG	5 cut(s)	238, 1311, 2026, 2244, 2828
BssAI	RCCGGY	2 cut(s)	80, 2862
BssECI	CCNNGG	9 cut(s)	27, 527, 634, 716, 1710, 1752, 1791, 2751, 3033
BssNAI	GTATAC	1 cut(s)	2557
BssSI	CACGAG	2 cut(s)	704, 981
BssT1I	CCWWGG	6 cut(s)	716, 1710, 1752, 1791, 2751, 3033
Bst1107I	GTATAC	1 cut(s)	2557
Bst2BI	CACGAG	2 cut(s)	704, 981
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	7 cut(s)	916, 1181, 1187, 1643, 2037, 2841, 2857
Bst6I	CTCTTC	2 cut(s)	868, 2133
BstAFI	CTTAAG	2 cut(s)	620, 2543
BstAPI	GCANNNNNTGC	1 cut(s)	2735
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	7 cut(s)	342, 830, 1540, 2379, 2443, 2447, 3023
BstDSI	CCRYGG	4 cut(s)	716, 1710, 1752, 2751
BstENI	CCTNNNNNAGG	1 cut(s)	1547
BstF5I	GGATG	8 cut(s)	811, 1135, 1801, 1816, 1914, 2209, 2626, 2668
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	2277
BstMCI	CGRYCG	2 cut(s)	199, 2630
BstMWI	GCNNNNNNNGC	7 cut(s)	445, 1117, 1217, 1576, 2735, 2747, 3027
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	5 cut(s)	1081, 1220, 2099, 2449, 2938
BstSCI	CCNGG	4 cut(s)	26, 27, 526, 1775
BstSFI	CTRYAG	3 cut(s)	1935, 2262, 2388
BstSLI	GKGCMC	3 cut(s)	524, 1039, 1959
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	7 cut(s)	208, 222, 661, 856, 2593, 2641, 2725
BstV2I	GAAGAC	3 cut(s)	2370, 2835, 3018
BstX2I	RGATCY	3 cut(s)	1051, 1606, 2824
BstYI	RGATCY	3 cut(s)	1051, 1606, 2824
BstZ17I	GTATAC	1 cut(s)	2557
Bsu15I	ATCGAT	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	2669
BsuI	GTATCC	1 cut(s)	2961
BsuRI	GGCC	9 cut(s)	266, 632, 939, 1037, 1503, 2441, 2478, 2750, 2866
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	4 cut(s)	716, 1710, 1752, 2751
BtsCI	GGATG	8 cut(s)	811, 1135, 1801, 1816, 1914, 2209, 2626, 2668
BtsI	GCAGTG	3 cut(s)	854, 1351, 2259
BtsIMutI	CAGTG	9 cut(s)	524, 549, 802, 854, 1099, 1351, 2019, 2259, 2757
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	2290
Cac8I	GCNNGC	7 cut(s)	342, 830, 1540, 2379, 2443, 2447, 3023
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	2 cut(s)	918, 1386
CfoI	GCGC	1 cut(s)	2277
Cfr10I	RCCGGY	2 cut(s)	80, 2862
Cfr9I	CCCGGG	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	6 cut(s)	241, 739, 1269, 1448, 2632, 2809
CspAI	ACCGGT	1 cut(s)	80
CviQI	GTAC	6 cut(s)	241, 739, 1269, 1448, 2632, 2809
DraI	TTTAAA	2 cut(s)	1438, 1684
DrdI	GACNNNNNNGTC	1 cut(s)	2867
DseDI	GACNNNNNNGTC	1 cut(s)	2867
EaeI	YGGCCR	1 cut(s)	2439
Eam1104I	CTCTTC	2 cut(s)	868, 2133
EarI	CTCTTC	2 cut(s)	868, 2133
EciI	GGCGGA	1 cut(s)	2675
Eco130I	CCWWGG	6 cut(s)	716, 1710, 1752, 1791, 2751, 3033
Eco24I	GRGCYC	2 cut(s)	664, 1039
Eco47I	GGWCC	4 cut(s)	24, 574, 779, 2985
Eco57I	CTGAAG	4 cut(s)	966, 1248, 1488, 2781
Eco81I	CCTNAGG	1 cut(s)	2669
Eco88I	CYCGRG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	1547
EcoO109I	RGGNCCY	4 cut(s)	779, 1035, 2477, 2985
EcoRI	GAATTC	3 cut(s)	513, 2522, 2789
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	6 cut(s)	716, 1710, 1752, 1791, 2751, 3033
EcoT22I	ATGCAT	1 cut(s)	1222
EcoT38I	GRGCYC	2 cut(s)	664, 1039
ErhI	CCWWGG	6 cut(s)	716, 1710, 1752, 1791, 2751, 3033
FalI	AAGNNNNNCTT	4 cut(s)	1461, 1493, 2754, 2786
FaqI	GGGAC	4 cut(s)	10, 1163, 2084, 2971
FauI	CCCGC	2 cut(s)	226, 2315
FbaI	TGATCA	3 cut(s)	808, 1014, 2178
FblI	GTMKAC	4 cut(s)	874, 2007, 2556, 2859
FokI	GGATG	8 cut(s)	798, 1142, 1808, 1823, 1921, 2216, 2633, 2675
FriOI	GRGCYC	2 cut(s)	664, 1039
FspBI	CTAG	5 cut(s)	768, 1004, 1661, 2103, 3057
GlaI	GCGC	1 cut(s)	2276
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	9 cut(s)	266, 632, 939, 1037, 1503, 2441, 2478, 2750, 2866
HapII	CCGG	6 cut(s)	28, 81, 207, 1317, 1777, 2863
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	2277
Hin6I	GCGC	1 cut(s)	2275
HinP1I	GCGC	1 cut(s)	2275
HincII	GTYRAC	2 cut(s)	1330, 2008
HindII	GTYRAC	2 cut(s)	1330, 2008
HindIII	AAGCTT	2 cut(s)	350, 1577
HpaII	CCGG	6 cut(s)	28, 81, 207, 1317, 1777, 2863
HphI	GGTGA	5 cut(s)	704, 1024, 1289, 2594, 2693
Hpy99I	CGWCG	3 cut(s)	275, 439, 3043
HpyAV	CCTTC	5 cut(s)	580, 1543, 1946, 2140, 2815
HpyCH4III	ACNGT	7 cut(s)	916, 1181, 1187, 1643, 2037, 2841, 2857
HpyCH4IV	ACGT	3 cut(s)	309, 1332, 2367
HpyCH4V	TGCA	8 cut(s)	695, 1067, 1133, 1220, 1394, 1498, 2264, 2467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	445, 1117, 1217, 1576, 2735, 2747, 3027
HpySE526I	ACGT	3 cut(s)	309, 1332, 2367
HspAI	GCGC	1 cut(s)	2275
Ksp22I	TGATCA	3 cut(s)	808, 1014, 2178
LmnI	GCTCC	3 cut(s)	601, 2272, 2410
Lsp1109I	GCAGC	7 cut(s)	208, 222, 661, 856, 2593, 2641, 2725
LweI	GCATC	7 cut(s)	1120, 1229, 1738, 1899, 2199, 2890, 3054
MaeI	CTAG	5 cut(s)	768, 1004, 1661, 2103, 3057
MaeII	ACGT	3 cut(s)	309, 1332, 2367
MaeIII	GTNAC	5 cut(s)	699, 923, 1181, 1234, 1583
MfeI	CAATTG	2 cut(s)	1520, 2537
MflI	RGATCY	3 cut(s)	1051, 1606, 2824
MhlI	GDGCHC	9 cut(s)	524, 664, 802, 1039, 1404, 1630, 1959, 3023, 3032
MlsI	TGGCCA	1 cut(s)	2441
MluNI	TGGCCA	1 cut(s)	2441
MlyI	GAGTC	4 cut(s)	86, 548, 854, 1568
MmeI	TCCRAC	3 cut(s)	18, 1634, 1788
Mox20I	TGGCCA	1 cut(s)	2441
Mph1103I	ATGCAT	1 cut(s)	1222
MroXI	GAANNNNTTC	2 cut(s)	186, 951
MscI	TGGCCA	1 cut(s)	2441
MslI	CAYNNNNRTG	4 cut(s)	795, 1832, 2112, 2816
Msp20I	TGGCCA	1 cut(s)	2441
MspA1I	CMGCKG	4 cut(s)	22, 221, 881, 2606
MspCI	CTTAAG	2 cut(s)	620, 2543
MspI	CCGG	6 cut(s)	28, 81, 207, 1317, 1777, 2863
MspR9I	CCNGG	4 cut(s)	28, 29, 528, 1777
MunI	CAATTG	2 cut(s)	1520, 2537
Mva1269I	GAATGC	2 cut(s)	436, 1382
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	7 cut(s)	445, 1117, 1217, 1576, 2735, 2747, 3027
NciI	CCSGG	3 cut(s)	28, 29, 1777
NcoI	CCATGG	4 cut(s)	716, 1710, 1752, 2751
NmuCI	GTSAC	1 cut(s)	699
NruI	TCGCGA	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	5 cut(s)	1081, 1220, 2099, 2449, 2938
NspV	TTCGAA	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	2449
PagI	TCATGA	2 cut(s)	918, 1386
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	2 cut(s)	436, 1382
PdmI	GAANNNNTTC	2 cut(s)	186, 951
PflFI	GACNNNGTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	1775
PinAI	ACCGGT	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	4 cut(s)	86, 548, 854, 1567
PpsI	GAGTC	4 cut(s)	86, 548, 854, 1567
PpuMI	RGGWCCY	2 cut(s)	779, 2985
PshBI	ATTAAT	1 cut(s)	1248
PsiI	TTATAA	1 cut(s)	1832
Psp5II	RGGWCCY	2 cut(s)	779, 2985
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	526
PspOMI	GGGCCC	1 cut(s)	1035
PspPPI	RGGWCCY	2 cut(s)	779, 2985
PstI	CTGCAG	1 cut(s)	2266
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	3 cut(s)	1051, 1606, 2824
PsyI	GACNNNGTC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	881, 2606
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	6 cut(s)	242, 740, 1270, 1449, 2633, 2810
RsaNI	GTAC	6 cut(s)	241, 739, 1269, 1448, 2632, 2809
RseI	CAYNNNNRTG	4 cut(s)	795, 1832, 2112, 2816
SalI	GTCGAC	1 cut(s)	2006
ScaI	AGTACT	1 cut(s)	1270
SchI	GAGTC	4 cut(s)	86, 548, 854, 1568
ScrFI	CCNGG	4 cut(s)	28, 29, 528, 1777
SduI	GDGCHC	9 cut(s)	524, 664, 802, 1039, 1404, 1630, 1959, 3023, 3032
SfaNI	GCATC	7 cut(s)	1120, 1229, 1738, 1899, 2199, 2890, 3054
SfcI	CTRYAG	3 cut(s)	1935, 2262, 2388
SfuI	TTCGAA	1 cut(s)	419
SinI	GGWCC	4 cut(s)	24, 574, 779, 2985
SmaI	CCCGGG	1 cut(s)	29
SmiMI	CAYNNNNRTG	4 cut(s)	795, 1832, 2112, 2816
SmlI	CTYRAG	9 cut(s)	620, 995, 1299, 1544, 1970, 2286, 2322, 2543, 3016
SmoI	CTYRAG	9 cut(s)	620, 995, 1299, 1544, 1970, 2286, 2322, 2543, 3016
SpeI	ACTAGT	1 cut(s)	3056
SphI	GCATGC	1 cut(s)	2449
SspI	AATATT	3 cut(s)	1361, 2056, 2332
SspMI	CTAG	5 cut(s)	768, 1004, 1661, 2103, 3057
StyD4I	CCNGG	4 cut(s)	26, 27, 526, 1775
StyI	CCWWGG	6 cut(s)	716, 1710, 1752, 1791, 2751, 3033
TaaI	ACNGT	7 cut(s)	916, 1181, 1187, 1643, 2037, 2841, 2857
TaiI	ACGT	3 cut(s)	312, 1335, 2370
TaqII	GACCGA	1 cut(s)	2616
TatI	WGTACW	4 cut(s)	738, 1268, 1447, 2808
TauI	GCSGC	3 cut(s)	131, 471, 2660
TscAI	CASTG	9 cut(s)	524, 556, 802, 854, 1099, 1351, 2026, 2266, 2764
TseFI	GTSAC	1 cut(s)	699
TseI	GCWGC	7 cut(s)	210, 221, 649, 844, 2606, 2654, 2738
Tsp45I	GTSAC	1 cut(s)	699
TspGWI	ACGGA	3 cut(s)	675, 2516, 2895
TspMI	CCCGGG	1 cut(s)	27
TspRI	CASTG	9 cut(s)	524, 556, 802, 854, 1099, 1351, 2026, 2266, 2764
Tth111I	GACNNNGTC	1 cut(s)	47
Vha464I	CTTAAG	2 cut(s)	620, 2543
VpaK11BI	GGWCC	4 cut(s)	24, 574, 779, 2985
VspI	ATTAAT	1 cut(s)	1248
XagI	CCTNNNNNAGG	1 cut(s)	1547
XapI	RAATTY	7 cut(s)	409, 513, 1135, 2161, 2220, 2522, 2789
XceI	RCATGY	5 cut(s)	1081, 1220, 2099, 2449, 2938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmaI	CCCGGG	1 cut(s)	27
XmiI	GTMKAC	4 cut(s)	874, 2007, 2556, 2859
XmnI	GAANNNNTTC	2 cut(s)	186, 951
XspI	CTAG	5 cut(s)	768, 1004, 1661, 2103, 3057
ZrmI	AGTACT	1 cut(s)	1270
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.