Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

3292271 .. 3298602

Gene Structure 6332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGGATTTTGATTTGGATCAGGCCGATACCGTTGAACCGGGACCCGTTTGGGGAGCCATTCCTACTTCTCCCCCAAGTTCTTCTCTACCAAGTCCACAGATATTGTTCTACTGGGTCTCGCACACCATCAAGGAAACCTCTGCGTCGTTGTTTTTGCTCTCTCTCTACAATGGCGACTGTTCCCATCAATTTCTCTCACTAAAACACCCACCTTCCACCATCCACCATTACAATCAACCCAAAATCCAACTACCCATCTGTTTGTTTCTCGGGAAAATCCCATTACTGAGAGCCCAGATTCCATCTATGGCGACCCCGAAACCCCAGCGGTCCCGGGAGGAGTTGGAGGACATAGTCCTCCGCAAAATCTTTCTCGTATCGCTGACCGGTTCATCGGACTCCGATTCCCGAGTCGTTTACTTGGAGATGACTGCGGCAGAGATTCTCAGCGAGGGGAAAGAGTTAAGGCTCAATTACGACCTCATGGAATCGATTCTAATCGATCGGCTATCCGGCAGCTTCCCCGCTGCTGAACCGCCGTTCCAGTACCTGATCGGGTGCTACAAACGCGCCTACGACGAGGGTAAGAAAATTGCTTCCATGAAAGATAGGAACTTGAAGTCGGAATTGGAATCCGTGGTTAGGCAAGCGAAAAAGCTTTCGGTTTCGTATTGTAGGATTCATTTGGGGAATCCCGAATCGTTCCCCAACCCGAATTTCGATTCGAACAAGTCGAATGCCTCGCCTTTATTGCCATTGATCTTCTCAGAGGGTGGCGGTTCAGGTGATGGGTTTGGAGGAAGTGGGAGTAGTGGGGGAATTCAGTGCCCACCTGGGTTTTTGGAGGAGTTCTTCACTGACTCCGATTTCGATAGCTTGGACCCAATTTTGAAGGGGTTGTATGAGGAGCTTAGAGAGATTGTGCTTAAGGTTTCGGCCCTCGGAAACTTCCAGCAGCCACTGAGGGCTCTGTATTTTTTGGTTAAGTTGCCGGTTGGTGCAAGGTCACTTGTGAATCACCCGTGGTGGATTCCAAAAGGGGTGTACTTGAATGGACGTGTGATTGAGAGGACTAGCATTTTGGGCCCTTTTTTTCATGTCAGTGCTCTGCCTGATAATCCTATTTTCAAGAGCCAGCCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCTTCAACTCGTAGACCAGCTGATCTGCTATCTTCATTTGCCACGATTAAGACAGTCATGAATAACTTATATGATGGCCTTACTGAAGTTCTTCTCTTACTACTGAAAAATGCTGACACCCGTGAGAATGTTCTCGAGTATCTTGCAGAGGTGATCAACAAAAACTCATCAAGGGCTCAGATTCAGGTAGATCCTCTTTCATGTGCAAGTTCAGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGGCTTTGTGATCCATTTTTAGATGCAAATTTAACAAAAAGGGACAAAATCGATCCAAAATATGTATTCTACAGTAACCGTTTGGAGTTAAGAGGTTTGACTGCTTTACATGCATCGTCTGAAGAAGTTACTGAATGGATTAATAAAGCTAGTATGGGGAATACTGATGGTGAAACTCGCCTTTTACAATCTCAAGAAGCCACCAGTTCCGGAAATAGTGTCAACGTGAAGCCAAATAGTGAAAAAGCTAAATATTCATTTATTTGCGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGATTGTTGAAAGCATTTTCTGACTTTAAACATTTAGTACAGGACATTTCAAGGTCTGAAGATACTCTCGCCACACTTAAAGCCATGCAAGGCCAGACTTCTTCTCCACAATTAGAGACAGATATAGCTCGCCTTGAGAAGGAAATAGAGTCGTATTCGCAGGAAAAGCTTTCTTATGAAGCTCAGATATTAAGGGATCCAACAGTTATACAGAGTGCTCTTACTTTCTATCGTTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGGTTTAAAATGCCCCTGCCATCAACTAGCCCAATGGAGTTTGCTTCTATGCCGGAGCATTTTGTGGAAGATGCCATGGAGTTGCTTATATTTGCTTCCCGGATTCCAAAAGCCTTGGATGGGGTTTTGTTGGATGATTTTATGAACTTCATTATAATGTTTATGGCCAGCCCAGAATATATCAGGAACCCTTACCTAAGAGCAAAGATGGTTGAAGTCCTAAACTGCTGGATGCCCCGTGGAAGTGGATCATCTATTACAGCGACCCTATTTGAAGGGCACCAACTATCTCTTGAGTATCTTGTGAGGAATCTCTTGAAGCTATATGTTGACATCGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAATATTCGCCACAATATTGCTGAACTTCTTGAATATCTGTGGCATGTCCCTAGTCATCGAAATGCTTGGAAACAGATTGCTAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTAAACTTCTTGATCGATGATAGCATCTATCTTCTGGATGAAAGTCTTAACAAAATTCTTGAACACAAAGAACTGGAAGCTGAGATGTCAAACACTGCAGAGTGGGAGCGGAGACCTGCTCAAGAAAGGCAGGAGAGAACACGCCTCTTCCAGTCTCAAGAAAATATTATCCGAATAGATATGAAGTTAGCAAATGAAGACGTTAGTATGATGGCATTTACTACAGAACAAATTACAGCACCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCCAGCATGCTCAATTACTTTTTGTTGCAATTAGTAGGCCCTCAAAGAAAATCTCTTAGCTTGAAAGACCCTGAGAAGTATGAATTCCGGCCAAAGCAATTGCTTAAGCAGATTGTATACATATATGTTCATTTGGCAAAGGGTGATTCAGAAAATATATTTCCAGCTGCCATCTCAAAGGATGGTCGGTCGTACAATGAGCAGTTATTTAGTGCTGCAGCAGATGTCCTAAGGCGGAAAATTGGTGAAGATGAGAGGATCATACAAGAGTTTATCGAGCTAGGTGCGAAAGCCAAGGTTGCTGCTTCAGAGGCCATGGACATTGAAGCTATTCTTGGGGACATACCAGATGAATTCCTCGATCCAATTCAGTACACTTTAATGAAGGATCCAGTCATCTTACCCTCTTCAAGAATCACAGTAGACCGACCGGTCATTCAAAGGCATCTTCTTAGTGATAGTTCTGATCCGTTCAACCGATCCCATCTTACTGCGGACATGCTGATACCAGACAACGAGTTAAAGGCAAGGATACAAGAGTTCATTAGGTCCCAAGAATCGAAGAAGCGCGGGGAAGACTTGAGCACGCAGAGCTCCAAGGCAACGATACAAACTACAACTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

1129

Amino Acids

127.54

Weight (kDa)

5.35

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	361 - 1013	5.9e-205	Ubiquitin elongating factor core
U-box	PF04564	1030 - 1101	5.4e-30	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2138
AasI	GACNNNNNNGTC	1 cut(s)	3176
Acc36I	ACCTGC	1 cut(s)	2596
AccB1I	GGYRCC	1 cut(s)	2262
AccBSI	CCGCTC	1 cut(s)	2581
AccI	GTMKAC	3 cut(s)	1180, 2862, 3168
AccII	CGCG	2 cut(s)	570, 3315
AccIII	TCCGGA	1 cut(s)	1622
AcoI	YGGCCR	3 cut(s)	2148, 2745, 2834
AcsI	RAATTY	7 cut(s)	715, 819, 1441, 2467, 2526, 2828, 3098
AcuI	CTGAAG	4 cut(s)	1272, 1554, 1794, 3036
AfaI	GTAC	5 cut(s)	548, 1046, 1755, 2939, 3119
AfiI	CCNNNNNNNGG	5 cut(s)	50, 642, 1145, 1855, 2103
AflII	CTTAAG	2 cut(s)	926, 2849
AflIII	ACRYGT	1 cut(s)	1057
AgeI	ACCGGT	2 cut(s)	386, 3175
AhlI	ACTAGT	1 cut(s)	3365
AjiI	CACGTC	1 cut(s)	1058
AjnI	CCWGG	1 cut(s)	832
AjuI	GAANNNNNNNTTGG	6 cut(s)	611, 643, 701, 733, 3063, 3095
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
Alw21I	GWGCWC	5 cut(s)	1108, 1710, 1936, 3332, 3341
Alw26I	GTCTC	4 cut(s)	121, 1826, 2578, 2631
AlwNI	CAGNNNCTG	2 cut(s)	550, 961
Ama87I	CYCGRG	4 cut(s)	269, 333, 408, 1301
Aor13HI	TCCGGA	1 cut(s)	1622
ApaI	GGGCCC	1 cut(s)	1088
ApeKI	GCWGC	8 cut(s)	516, 527, 955, 1150, 2912, 2960, 2963, 3047
ApoI	RAATTY	7 cut(s)	715, 819, 1441, 2467, 2526, 2828, 3098
ArsI	GACNNNNNNTTYG	4 cut(s)	851, 883, 1063, 1095
AseI	ATTAAT	1 cut(s)	1554
AsiGI	ACCGGT	2 cut(s)	386, 3175
Asp700I	GAANNNNTTC	3 cut(s)	492, 1257, 3075
AspLEI	GCGC	2 cut(s)	572, 3315
AspS9I	GGNCC	8 cut(s)	41, 330, 880, 937, 1084, 1085, 2783, 3294
AsuC2I	CCSGG	4 cut(s)	39, 334, 335, 2083
AsuHPI	GGTGA	6 cut(s)	797, 1010, 1330, 1595, 2900, 3002
AsuII	TTCGAA	1 cut(s)	725
AvaI	CYCGRG	4 cut(s)	269, 333, 408, 1301
AvaII	GGWCC	4 cut(s)	41, 330, 880, 3294
AxyI	CCTNAGG	1 cut(s)	2975
BaeGI	GKGCMC	3 cut(s)	830, 1088, 2265
BaeI	ACNNNNGTAYC	2 cut(s)	3269, 3302
BalI	TGGCCA	2 cut(s)	2150, 2747
BamHI	GGATCC	2 cut(s)	1912, 3133
BanI	GGYRCC	1 cut(s)	2262
BanII	GRGCYC	5 cut(s)	295, 970, 1088, 1345, 3341
BarI	GAAGNNNNNNTAC	2 cut(s)	2444, 2476
BbsI	GAAGAC	2 cut(s)	2676, 3327
Bbv12I	GWGCWC	5 cut(s)	1108, 1710, 1936, 3332, 3341
BbvI	GCAGC	8 cut(s)	514, 528, 967, 1162, 2899, 2947, 2975, 3034
BceAI	ACGGC	1 cut(s)	523
BcgI	CGANNNNNNTGC	4 cut(s)	1292, 1326, 3011, 3045
BciT130I	CCWGG	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	3270
BclI	TGATCA	1 cut(s)	1320
BcnI	CCSGG	4 cut(s)	39, 334, 335, 2083
BcoDI	GTCTC	4 cut(s)	121, 1826, 2578, 2631
BcuI	ACTAGT	1 cut(s)	3365
BfaI	CTAG	7 cut(s)	1074, 1563, 1967, 2010, 2409, 3026, 3366
BfmI	CTRYAG	4 cut(s)	1483, 2568, 2694, 2961
BfrI	CTTAAG	2 cut(s)	926, 2849
BfuAI	ACCTGC	1 cut(s)	2596
BfuI	GTATCC	1 cut(s)	3270
BisI	GCNGC	9 cut(s)	435, 517, 528, 956, 1151, 2913, 2961, 2964, 3048
BlsI	GCNGC	9 cut(s)	436, 518, 529, 957, 1152, 2914, 2962, 2965, 3049
Bme1390I	CCNGG	5 cut(s)	39, 334, 335, 834, 2083
Bme18I	GGWCC	4 cut(s)	41, 330, 880, 3294
BmeT110I	CYCGRG	4 cut(s)	269, 333, 408, 1301
BmgBI	CACGTC	1 cut(s)	1058
BmgT120I	GGNCC	8 cut(s)	41, 330, 880, 937, 1084, 1085, 2783, 3294
BmrFI	CCNGG	5 cut(s)	39, 334, 335, 834, 2083
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	6 cut(s)	1426, 1535, 2044, 2205, 2505, 3199
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	2 cut(s)	2676, 3327
BplI	GAGNNNNNCTC	2 cut(s)	2575, 2607
Bpu10I	CCTNAGC	1 cut(s)	2439
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	6 cut(s)	1590, 1871, 2297, 2577, 2613, 3346
BpuMI	CCSGG	4 cut(s)	39, 334, 335, 2083
Bsa29I	ATCGAT	4 cut(s)	491, 501, 1464, 2487
BsaBI	GATNNNNATC	2 cut(s)	15, 497
BsaI	GGTCTC	2 cut(s)	121, 2578
BsaWI	WCCGGW	3 cut(s)	386, 1622, 3175
BsaXI	ACNNNNNCTCC	2 cut(s)	1804, 1834
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 642, 1145, 1855, 2103
Bse118I	RCCGGY	3 cut(s)	386, 991, 3175
Bse1I	ACTGG	7 cut(s)	116, 544, 1617, 2332, 2550, 2623, 3137
Bse21I	CCTNAGG	1 cut(s)	2975
Bse8I	GATNNNNATC	2 cut(s)	15, 497
BseAI	TCCGGA	1 cut(s)	1622
BseBI	CCWGG	1 cut(s)	834
BseCI	ATCGAT	4 cut(s)	491, 501, 1464, 2487
BseGI	GGATG	6 cut(s)	219, 2107, 2122, 2220, 2515, 2932
BseJI	GATNNNNATC	2 cut(s)	15, 497
BseLI	CCNNNNNNNGG	5 cut(s)	50, 642, 1145, 1855, 2103
BseNI	ACTGG	7 cut(s)	116, 544, 1617, 2332, 2550, 2623, 3137
BseRI	GAGGAG	4 cut(s)	353, 860, 920, 2462
BseSI	GKGCMC	3 cut(s)	830, 1088, 2265
BseXI	GCAGC	8 cut(s)	514, 528, 967, 1162, 2899, 2947, 2975, 3034
BseYI	CCCAGC	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	570, 3315
Bsh1285I	CGRYCG	3 cut(s)	505, 2936, 3176
BshNI	GGYRCC	1 cut(s)	2262
BshTI	ACCGGT	2 cut(s)	386, 3175
BshVI	ATCGAT	4 cut(s)	491, 501, 1464, 2487
BsiEI	CGRYCG	3 cut(s)	505, 2936, 3176
BsiHKAI	GWGCWC	5 cut(s)	1108, 1710, 1936, 3332, 3341
BsiHKCI	CYCGRG	4 cut(s)	269, 333, 408, 1301
BslFI	GGGAC	6 cut(s)	54, 316, 1469, 2390, 3098, 3280
BslI	CCNNNNNNNGG	5 cut(s)	50, 642, 1145, 1855, 2103
BsmAI	GTCTC	4 cut(s)	121, 1826, 2578, 2631
BsmFI	GGGAC	6 cut(s)	54, 316, 1469, 2390, 3098, 3280
BsmI	GAATGC	2 cut(s)	742, 1688
Bso31I	GGTCTC	2 cut(s)	121, 2578
BsoBI	CYCGRG	4 cut(s)	269, 333, 408, 1301
Bsp119I	TTCGAA	1 cut(s)	725
Bsp120I	GGGCCC	1 cut(s)	1084
Bsp13I	TCCGGA	1 cut(s)	1622
Bsp19I	CCATGG	2 cut(s)	2058, 3060
BspDI	ATCGAT	4 cut(s)	491, 501, 1464, 2487
BspEI	TCCGGA	1 cut(s)	1622
BspFNI	CGCG	2 cut(s)	570, 3315
BspHI	TCATGA	2 cut(s)	1224, 1692
BspMAI	CTGCAG	2 cut(s)	2572, 2965
BspMI	ACCTGC	1 cut(s)	2596
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	2262
BspTI	CTTAAG	2 cut(s)	926, 2849
BspTNI	GGTCTC	2 cut(s)	121, 2578
BsrBI	CCGCTC	1 cut(s)	2581
BsrFI	RCCGGY	3 cut(s)	386, 991, 3175
BsrI	ACTGG	7 cut(s)	116, 544, 1617, 2332, 2550, 2623, 3137
BssAI	RCCGGY	3 cut(s)	386, 991, 3175
BssNAI	GTATAC	1 cut(s)	2863
BssT1I	CCWWGG	5 cut(s)	2058, 2097, 3039, 3060, 3342
Bst1107I	GTATAC	1 cut(s)	2863
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	8 cut(s)	31, 179, 1222, 1487, 1493, 1921, 2343, 3166
Bst6I	CTCTTC	3 cut(s)	2439, 2624, 3157
BstAFI	CTTAAG	2 cut(s)	926, 2849
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	7 cut(s)	648, 1136, 1846, 2152, 2749, 2753, 3332
BstDSI	CCRYGG	5 cut(s)	636, 1022, 2058, 2221, 3060
BstENI	CCTNNNNNAGG	1 cut(s)	1853
BstF5I	GGATG	6 cut(s)	219, 2107, 2122, 2220, 2515, 2932
BstFNI	CGCG	2 cut(s)	570, 3315
BstHHI	GCGC	2 cut(s)	572, 3315
BstMAI	GTCTC	4 cut(s)	121, 1826, 2578, 2631
BstMCI	CGRYCG	3 cut(s)	505, 2936, 3176
BstMWI	GCNNNNNNNGC	8 cut(s)	567, 751, 1083, 1523, 1882, 3044, 3056, 3336
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	5 cut(s)	1387, 1526, 2405, 2755, 3247
BstSCI	CCNGG	5 cut(s)	37, 332, 333, 832, 2081
BstSFI	CTRYAG	4 cut(s)	1483, 2568, 2694, 2961
BstSLI	GKGCMC	3 cut(s)	830, 1088, 2265
BstUI	CGCG	2 cut(s)	570, 3315
BstV1I	GCAGC	8 cut(s)	514, 528, 967, 1162, 2899, 2947, 2975, 3034
BstV2I	GAAGAC	2 cut(s)	2676, 3327
BstX2I	RGATCY	3 cut(s)	1357, 1912, 3133
BstYI	RGATCY	3 cut(s)	1357, 1912, 3133
BstZ17I	GTATAC	1 cut(s)	2863
Bsu15I	ATCGAT	4 cut(s)	491, 501, 1464, 2487
Bsu36I	CCTNAGG	1 cut(s)	2975
BsuI	GTATCC	1 cut(s)	3270
BsuTUI	ATCGAT	4 cut(s)	491, 501, 1464, 2487
BtgI	CCRYGG	5 cut(s)	636, 1022, 2058, 2221, 3060
BtrI	CACGTC	1 cut(s)	1058
BtsCI	GGATG	6 cut(s)	219, 2107, 2122, 2220, 2515, 2932
BtsI	GCAGTG	2 cut(s)	1160, 2565
BtsIMutI	CAGTG	8 cut(s)	830, 855, 959, 1108, 1160, 1405, 2325, 2565
BveI	ACCTGC	1 cut(s)	2596
Cac8I	GCNNGC	7 cut(s)	648, 1136, 1846, 2152, 2749, 2753, 3332
CaiI	CAGNNNCTG	2 cut(s)	550, 961
CciI	TCATGA	2 cut(s)	1224, 1692
CfoI	GCGC	2 cut(s)	572, 3315
Cfr10I	RCCGGY	3 cut(s)	386, 991, 3175
Cfr13I	GGNCC	8 cut(s)	41, 330, 880, 937, 1084, 1085, 2783, 3294
Cfr9I	CCCGGG	1 cut(s)	333
ClaI	ATCGAT	4 cut(s)	491, 501, 1464, 2487
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	547, 1045, 1754, 2938, 3118
CspAI	ACCGGT	2 cut(s)	386, 3175
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviQI	GTAC	5 cut(s)	547, 1045, 1754, 2938, 3118
DraI	TTTAAA	2 cut(s)	1744, 1990
DrdI	GACNNNNNNGTC	1 cut(s)	3176
DseDI	GACNNNNNNGTC	1 cut(s)	3176
EaeI	YGGCCR	3 cut(s)	2148, 2745, 2834
Eam1104I	CTCTTC	3 cut(s)	2439, 2624, 3157
EarI	CTCTTC	3 cut(s)	2439, 2624, 3157
EciI	GGCGGA	1 cut(s)	2995
Ecl136II	GAGCTC	1 cut(s)	3339
Eco130I	CCWWGG	5 cut(s)	2058, 2097, 3039, 3060, 3342
Eco24I	GRGCYC	5 cut(s)	295, 970, 1088, 1345, 3341
Eco31I	GGTCTC	2 cut(s)	121, 2578
Eco47I	GGWCC	4 cut(s)	41, 330, 880, 3294
Eco53kI	GAGCTC	1 cut(s)	3339
Eco57I	CTGAAG	4 cut(s)	1272, 1554, 1794, 3036
Eco81I	CCTNAGG	1 cut(s)	2975
Eco88I	CYCGRG	4 cut(s)	269, 333, 408, 1301
EcoICRI	GAGCTC	1 cut(s)	3339
EcoNI	CCTNNNNNAGG	1 cut(s)	1853
EcoO109I	RGGNCCY	4 cut(s)	41, 1085, 2783, 3294
EcoRI	GAATTC	3 cut(s)	819, 2828, 3098
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	5 cut(s)	2058, 2097, 3039, 3060, 3342
EcoT22I	ATGCAT	1 cut(s)	1528
EcoT38I	GRGCYC	5 cut(s)	295, 970, 1088, 1345, 3341
ErhI	CCWWGG	5 cut(s)	2058, 2097, 3039, 3060, 3342
FalI	AAGNNNNNCTT	2 cut(s)	3063, 3095
FaqI	GGGAC	6 cut(s)	54, 316, 1469, 2390, 3098, 3280
FauI	CCCGC	2 cut(s)	532, 3308
FbaI	TGATCA	1 cut(s)	1320
FblI	GTMKAC	3 cut(s)	1180, 2862, 3168
Fnu4HI	GCNGC	9 cut(s)	435, 517, 528, 956, 1151, 2913, 2961, 2964, 3048
FokI	GGATG	6 cut(s)	206, 2114, 2129, 2227, 2522, 2939
FriOI	GRGCYC	5 cut(s)	295, 970, 1088, 1345, 3341
Fsp4HI	GCNGC	9 cut(s)	435, 517, 528, 956, 1151, 2913, 2961, 2964, 3048
FspBI	CTAG	7 cut(s)	1074, 1563, 1967, 2010, 2409, 3026, 3366
GlaI	GCGC	2 cut(s)	571, 3314
GluI	GCNGC	9 cut(s)	435, 517, 528, 956, 1151, 2913, 2961, 2964, 3048
GsaI	CCCAGC	1 cut(s)	328
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	2 cut(s)	572, 3315
Hin6I	GCGC	2 cut(s)	570, 3313
HinP1I	GCGC	2 cut(s)	570, 3313
HincII	GTYRAC	2 cut(s)	1636, 2314
HindII	GTYRAC	2 cut(s)	1636, 2314
HindIII	AAGCTT	3 cut(s)	656, 1167, 1883
HphI	GGTGA	6 cut(s)	797, 1010, 1330, 1595, 2900, 3002
Hpy99I	CGWCG	2 cut(s)	148, 581
HpyAV	CCTTC	6 cut(s)	222, 886, 1849, 2252, 2446, 3124
HpyCH4III	ACNGT	8 cut(s)	31, 179, 1222, 1487, 1493, 1921, 2343, 3166
HpyCH4IV	ACGT	3 cut(s)	1057, 1638, 2673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	567, 751, 1083, 1523, 1882, 3044, 3056, 3336
HpySE526I	ACGT	3 cut(s)	1057, 1638, 2673
HspAI	GCGC	2 cut(s)	570, 3313
KflI	GGGWCCC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	1622
Ksp22I	TGATCA	1 cut(s)	1320
LmnI	GCTCC	5 cut(s)	53, 907, 2038, 2578, 3344
Lsp1109I	GCAGC	8 cut(s)	514, 528, 967, 1162, 2899, 2947, 2975, 3034
LweI	GCATC	6 cut(s)	1426, 1535, 2044, 2205, 2505, 3199
MaeI	CTAG	7 cut(s)	1074, 1563, 1967, 2010, 2409, 3026, 3366
MaeII	ACGT	3 cut(s)	1057, 1638, 2673
MaeIII	GTNAC	3 cut(s)	1005, 1487, 1540
MbiI	CCGCTC	1 cut(s)	2581
MfeI	CAATTG	1 cut(s)	2843
MflI	RGATCY	3 cut(s)	1357, 1912, 3133
MlsI	TGGCCA	2 cut(s)	2150, 2747
MluNI	TGGCCA	2 cut(s)	2150, 2747
MlyI	GAGTC	4 cut(s)	392, 420, 854, 1874
MmeI	TCCRAC	5 cut(s)	271, 324, 603, 1940, 2094
Mox20I	TGGCCA	2 cut(s)	2150, 2747
Mph1103I	ATGCAT	1 cut(s)	1528
MroI	TCCGGA	1 cut(s)	1622
MroXI	GAANNNNTTC	3 cut(s)	492, 1257, 3075
MscI	TGGCCA	2 cut(s)	2150, 2747
MslI	CAYNNNNRTG	4 cut(s)	1101, 2138, 2418, 3125
Msp20I	TGGCCA	2 cut(s)	2150, 2747
MspA1I	CMGCKG	4 cut(s)	328, 527, 1187, 2912
MspCI	CTTAAG	2 cut(s)	926, 2849
MspR9I	CCNGG	5 cut(s)	39, 334, 335, 834, 2083
MunI	CAATTG	1 cut(s)	2843
Mva1269I	GAATGC	2 cut(s)	742, 1688
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	2 cut(s)	570, 3315
MwoI	GCNNNNNNNGC	8 cut(s)	567, 751, 1083, 1523, 1882, 3044, 3056, 3336
NciI	CCSGG	4 cut(s)	39, 334, 335, 2083
NcoI	CCATGG	2 cut(s)	2058, 3060
NmuCI	GTSAC	1 cut(s)	1005
NsiI	ATGCAT	1 cut(s)	1528
NspI	RCATGY	5 cut(s)	1387, 1526, 2405, 2755, 3247
NspV	TTCGAA	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	2755
PaeR7I	CTCGAG	1 cut(s)	1301
PagI	TCATGA	2 cut(s)	1224, 1692
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PctI	GAATGC	2 cut(s)	742, 1688
PdmI	GAANNNNTTC	3 cut(s)	492, 1257, 3075
PflFI	GACNNNGTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	2081
PinAI	ACCGGT	2 cut(s)	386, 3175
PkrI	GCNGC	9 cut(s)	436, 518, 529, 957, 1152, 2914, 2962, 2965, 3049
Ple19I	CGATCG	1 cut(s)	505
PleI	GAGTC	4 cut(s)	392, 419, 854, 1873
PpsI	GAGTC	4 cut(s)	392, 419, 854, 1873
PpuMI	RGGWCCY	2 cut(s)	41, 3294
PshBI	ATTAAT	1 cut(s)	1554
PsiI	TTATAA	1 cut(s)	2138
Psp124BI	GAGCTC	1 cut(s)	3341
Psp5II	RGGWCCY	2 cut(s)	41, 3294
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	832
PspOMI	GGGCCC	1 cut(s)	1084
PspPI	GGNCC	8 cut(s)	41, 330, 880, 937, 1084, 1085, 2783, 3294
PspPPI	RGGWCCY	2 cut(s)	41, 3294
PstI	CTGCAG	2 cut(s)	2572, 2965
PstNI	CAGNNNCTG	2 cut(s)	550, 961
PsuI	RGATCY	3 cut(s)	1357, 1912, 3133
PsyI	GACNNNGTC	1 cut(s)	353
PvuI	CGATCG	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	1187, 2912
RsaI	GTAC	5 cut(s)	548, 1046, 1755, 2939, 3119
RsaNI	GTAC	5 cut(s)	547, 1045, 1754, 2938, 3118
RseI	CAYNNNNRTG	4 cut(s)	1101, 2138, 2418, 3125
SacI	GAGCTC	1 cut(s)	3341
SatI	GCNGC	9 cut(s)	435, 517, 528, 956, 1151, 2913, 2961, 2964, 3048
Sau96I	GGNCC	8 cut(s)	41, 330, 880, 937, 1084, 1085, 2783, 3294
SchI	GAGTC	4 cut(s)	392, 420, 854, 1874
ScrFI	CCNGG	5 cut(s)	39, 334, 335, 834, 2083
SfaNI	GCATC	6 cut(s)	1426, 1535, 2044, 2205, 2505, 3199
SfcI	CTRYAG	4 cut(s)	1483, 2568, 2694, 2961
Sfr274I	CTCGAG	1 cut(s)	1301
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	4 cut(s)	41, 330, 880, 3294
SlaI	CTCGAG	1 cut(s)	1301
SmaI	CCCGGG	1 cut(s)	335
SmiMI	CAYNNNNRTG	4 cut(s)	1101, 2138, 2418, 3125
SmlI	CTYRAG	9 cut(s)	926, 1301, 1605, 1850, 2276, 2592, 2628, 2849, 3325
SmoI	CTYRAG	9 cut(s)	926, 1301, 1605, 1850, 2276, 2592, 2628, 2849, 3325
SpeI	ACTAGT	1 cut(s)	3365
SphI	GCATGC	1 cut(s)	2755
SspI	AATATT	4 cut(s)	1667, 2362, 2374, 2638
SspMI	CTAG	7 cut(s)	1074, 1563, 1967, 2010, 2409, 3026, 3366
SstI	GAGCTC	1 cut(s)	3341
StyD4I	CCNGG	5 cut(s)	37, 332, 333, 832, 2081
StyI	CCWWGG	5 cut(s)	2058, 2097, 3039, 3060, 3342
TaaI	ACNGT	8 cut(s)	31, 179, 1222, 1487, 1493, 1921, 2343, 3166
TaiI	ACGT	3 cut(s)	1060, 1641, 2676
TaqII	GACCGA	2 cut(s)	2922, 3186
TatI	WGTACW	3 cut(s)	1044, 1753, 3117
TauI	GCSGC	1 cut(s)	437
TscAI	CASTG	8 cut(s)	830, 862, 966, 1108, 1160, 1405, 2332, 2572
TseFI	GTSAC	1 cut(s)	1005
TseI	GCWGC	8 cut(s)	516, 527, 955, 1150, 2912, 2960, 2963, 3047
Tsp45I	GTSAC	1 cut(s)	1005
TspGWI	ACGGA	2 cut(s)	625, 3204
TspMI	CCCGGG	1 cut(s)	333
TspRI	CASTG	8 cut(s)	830, 862, 966, 1108, 1160, 1405, 2332, 2572
Tth111I	GACNNNGTC	1 cut(s)	353
Vha464I	CTTAAG	2 cut(s)	926, 2849
VpaK11BI	GGWCC	4 cut(s)	41, 330, 880, 3294
VspI	ATTAAT	1 cut(s)	1554
XagI	CCTNNNNNAGG	1 cut(s)	1853
XapI	RAATTY	7 cut(s)	715, 819, 1441, 2467, 2526, 2828, 3098
XceI	RCATGY	5 cut(s)	1387, 1526, 2405, 2755, 3247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1142
XhoI	CTCGAG	1 cut(s)	1301
XmaI	CCCGGG	1 cut(s)	333
XmiI	GTMKAC	3 cut(s)	1180, 2862, 3168
XmnI	GAANNNNTTC	3 cut(s)	492, 1257, 3075
XspI	CTAG	7 cut(s)	1074, 1563, 1967, 2010, 2409, 3026, 3366
Zsp2I	ATGCAT	1 cut(s)	1528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.