Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

6776073 .. 6779671

Gene Structure 3599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTATCTCCGGTGCTGCAGTTGGTTCAGGCAGAAATTTAAGAAGAGCGGTAGAGTTTGGGAAAACTCATGTGGTTAGGCCTAAAGGGAAACATCAAGCAACTATTGTCTGGTTACATGGGCTTGGGGACAATGGCTCGAGCTGGTCCCAGCTTTTGGAGACCCTTCCCCTTCCAAATATCAAATGGATTTGCCCGACTGCTCCTTCTCAACCAATAAGTTTATTTGGTGGTTTTCCCTCCACAGCTTGGTTTGATGTTGTGGACATCAATGAAGATGGACCTGATGATATGGAAGGATTGGATGTGGCTGCTGCACATGTTGCAAATCTGTTGTCGAATGAGCCTGCTGACATTAAATTAGGTGTTGGAGGATTCAGCATGGGTGCGGCGACATCTCTATATTCTGCAACTTGTTTTGCTCTCGGTAAATATGGAAATGGCAATCCATACCCTATCAATTTAAGCGCAATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCAAAGACATTGGCTGGCAAACTAGAAGAGGAACAGATCAAGAACCGAGCTGCATCGTTGCCCATTGTTGTCTGTCATGGAAAAGCTGATGATGTGGTACCGTTCAAGTTTGGGGAGAAATCTTCACAGGCTTTGCTTTCAAATGGGTTTAAGAAGGTGACCTTCAAACCTTACAGTGCACTTGGTCACCACACAATCCCACAGGAGTTGGATGAGTTGTGCGCATGGTTGACATCCACGCTCAGCCTCGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

252

Amino Acids

26.73

Weight (kDa)

6.15

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	23 - 244	2.2e-40	Phospholipase/Carboxylesterase
FSH1	PF03959	80 - 237	2.9e-06	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	724
Acc65I	GGTACC	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	2 cut(s)	157, 249
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	50, 389, 486
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	157, 249
AflII	CTTAAG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	607, 642, 667
AluBI	AGCT	5 cut(s)	144, 154, 248, 551, 587
AluI	AGCT	5 cut(s)	144, 154, 248, 551, 587
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	4 cut(s)	17, 311, 314, 551
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp718I	GGTACC	1 cut(s)	598
AspLEI	GCGC	2 cut(s)	470, 725
AspS9I	GGNCC	2 cut(s)	147, 281
AsuHPI	GGTGA	2 cut(s)	670, 680
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	147, 281
BaeGI	GKGCMC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	4 cut(s)	4, 298, 301, 538
BccI	CCATC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	481
BisI	GCNGC	6 cut(s)	18, 312, 315, 390, 487, 552
BlpI	GCTNAGC	1 cut(s)	743
BlsI	GCNGC	6 cut(s)	19, 313, 316, 391, 488, 553
Bme18I	GGWCC	2 cut(s)	147, 281
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	147, 281
BmiI	GGNNCC	2 cut(s)	149, 600
BmsI	GCATC	1 cut(s)	563
Bpu1102I	GCTNAGC	1 cut(s)	743
BsaI	GGTCTC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 249
BseGI	GGATG	3 cut(s)	310, 718, 734
BseLI	CCNNNNNNNGG	2 cut(s)	157, 249
BseMII	CTCAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	4 cut(s)	4, 298, 301, 538
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	133, 143
BslI	CCNNNNNNNGG	2 cut(s)	157, 249
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	133, 143
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	1 cut(s)	537
Bsp1720I	GCTNAGC	1 cut(s)	743
BspACI	CCGC	3 cut(s)	50, 389, 486
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	756
BspLI	GGNNCC	2 cut(s)	149, 600
BspMAI	CTGCAG	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	598
BspTI	CTTAAG	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	50
BssMI	GATC	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	603, 677
Bst6I	CTCTTC	2 cut(s)	40, 522
BstAFI	CTTAAG	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	348, 491, 517
BstDEI	CTNAG	1 cut(s)	743
BstEII	GGTNACC	2 cut(s)	658, 686
BstF5I	GGATG	3 cut(s)	310, 718, 734
BstHHI	GCGC	2 cut(s)	470, 725
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 486
BstNSI	RCATGY	1 cut(s)	323
BstPI	GGTNACC	2 cut(s)	658, 686
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	4 cut(s)	4, 298, 301, 538
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	310, 718, 734
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	3 cut(s)	348, 491, 517
CfoI	GCGC	2 cut(s)	470, 725
Cfr13I	GGNCC	2 cut(s)	147, 281
Csp6I	GTAC	1 cut(s)	599
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	71, 119, 320, 382, 578, 726
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	40, 522
EarI	CTCTTC	2 cut(s)	40, 522
Eco147I	AGGCCT	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	147, 281
Eco88I	CYCGRG	1 cut(s)	139
Eco91I	GGTNACC	2 cut(s)	658, 686
EcoO65I	GGTNACC	2 cut(s)	658, 686
FaeI	CATG	6 cut(s)	74, 122, 323, 385, 581, 729
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	2 cut(s)	133, 143
FatI	CATG	6 cut(s)	70, 118, 319, 381, 577, 725
Fnu4HI	GCNGC	6 cut(s)	18, 312, 315, 390, 487, 552
FokI	GGATG	3 cut(s)	317, 721, 725
Fsp4HI	GCNGC	6 cut(s)	18, 312, 315, 390, 487, 552
FspAI	RTGCGCAY	1 cut(s)	724
FspBI	CTAG	1 cut(s)	524
FspI	TGCGCA	1 cut(s)	724
GlaI	GCGC	2 cut(s)	469, 724
GluI	GCNGC	6 cut(s)	18, 312, 315, 390, 487, 552
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	2 cut(s)	470, 725
Hin1II	CATG	6 cut(s)	74, 122, 323, 385, 581, 729
Hin6I	GCGC	2 cut(s)	468, 723
HinP1I	GCGC	2 cut(s)	468, 723
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	2 cut(s)	670, 680
Hpy166II	GTNNAC	3 cut(s)	265, 680, 732
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	3 cut(s)	265, 680, 732
HpyAV	CCTTC	7 cut(s)	176, 182, 216, 290, 649, 673, 746
HpyCH4III	ACNGT	2 cut(s)	603, 677
HpyCH4V	TGCA	7 cut(s)	20, 317, 326, 410, 503, 554, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 486
HpyF3I	CTNAG	1 cut(s)	743
Hsp92II	CATG	6 cut(s)	74, 122, 323, 385, 581, 729
HspAI	GCGC	2 cut(s)	468, 723
KpnI	GGTACC	1 cut(s)	602
Kzo9I	GATC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	4 cut(s)	4, 298, 301, 538
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	3 cut(s)	114, 658, 686
MalI	GATC	1 cut(s)	539
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	537
MboII	GAAGA	4 cut(s)	57, 287, 539, 615
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	3 cut(s)	37, 359, 460
MmeI	TCCRAC	2 cut(s)	349, 690
MnlI	CCTC	4 cut(s)	250, 365, 523, 758
MseI	TTAA	5 cut(s)	41, 357, 464, 482, 651
MspCI	CTTAAG	1 cut(s)	481
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	323, 486
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	6 cut(s)	74, 122, 323, 385, 581, 729
NlaIV	GGNNCC	2 cut(s)	149, 600
NmuCI	GTSAC	2 cut(s)	658, 686
NsbI	TGCGCA	1 cut(s)	724
NspI	RCATGY	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	82
PciI	ACATGT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	375
PflMI	CCANNNNNTGG	2 cut(s)	157, 249
PkrI	GCNGC	6 cut(s)	19, 313, 316, 391, 488, 553
PscI	ACATGT	1 cut(s)	319
PspEI	GGTNACC	2 cut(s)	658, 686
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	149, 600
PspPI	GGNCC	2 cut(s)	147, 281
PspXI	VCTCGAGB	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	5 cut(s)	41, 357, 464, 482, 651
SatI	GCNGC	6 cut(s)	18, 312, 315, 390, 487, 552
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	2 cut(s)	147, 281
SduI	GDGCHC	1 cut(s)	682
SfaNI	GCATC	1 cut(s)	563
SfcI	CTRYAG	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	139
SinI	GGWCC	2 cut(s)	147, 281
SlaI	CTCGAG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	139, 481
SmoI	CTYRAG	2 cut(s)	139, 481
Sse9I	AATT	3 cut(s)	37, 359, 460
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	50, 389, 486
SspMI	CTAG	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	603, 677
TaqI	TCGA	3 cut(s)	140, 338, 750
TasI	AATT	3 cut(s)	37, 359, 460
TauI	GCSGC	2 cut(s)	392, 489
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	5 cut(s)	41, 357, 464, 482, 651
Tru9I	TTAA	5 cut(s)	41, 357, 464, 482, 651
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	658, 686
TseI	GCWGC	4 cut(s)	17, 311, 314, 551
Tsp45I	GTSAC	2 cut(s)	658, 686
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	682
Van91I	CCANNNNNTGG	2 cut(s)	157, 249
Vha464I	CTTAAG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	678
VpaK11BI	GGWCC	2 cut(s)	147, 281
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	139
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.